mRNA_C-tenellus_contig968.7.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig968.7.1
Unique NamemRNA_C-tenellus_contig968.7.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Match: D8LES4_ECTSI (CCT-theta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES4_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.800e-28
Identity = 55/59 (93.22%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGMNKLVVNHLD 177
            MGMNLASGLQGMLK+GHNSYEGVDEAI+RNINAAK+LAAI+RTSLGPNGMNKLVVNHLD
Sbjct:    5 MGMNLASGLQGMLKDGHNSYEGVDEAIMRNINAAKELAAIVRTSLGPNGMNKLVVNHLD 63
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BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Match: A0A6H5KSW1_9PHAE (CCT-theta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.530e-28
Identity = 54/59 (91.53%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:    1 MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGMNKLVVNHLD 177
            MGMNLASGLQGMLK+GH+SYEGVDEAI+RNINAAK+LAAI+RTSLGPNGMNKLVVNHLD
Sbjct:    5 MGMNLASGLQGMLKDGHSSYEGVDEAIMRNINAAKELAAIVRTSLGPNGMNKLVVNHLD 63
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BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Match: A0A662WPR3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WPR3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.180e-22
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGMNKLVVNHLD 177
            MG+N+A GL  +LK+GH  +EGVDEA+ +NI+A KQLAAI R+SLGPNGMNKLV+NHL+
Sbjct:   48 MGLNVAGGLSSLLKDGHKHFEGVDEAVAKNIDAVKQLAAITRSSLGPNGMNKLVINHLE 106
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BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Match: A0A7S3MCK7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCK7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 7.490e-22
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGMNKLVVNHLD 177
            M +N A+GLQGMLK+GH SYEGV  A++RNI AAK +AA++RTSLGPNGMNKLVVNHL+
Sbjct:    5 MNLNSAAGLQGMLKDGHKSYEGVQGAVIRNIEAAKAIAAMVRTSLGPNGMNKLVVNHLE 63
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BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Match: A0A835Z415_9STRA (CCT-theta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z415_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 7.600e-22
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGMNKLVVNH 171
            MG NLASGL GMLKEGH SYEGVDEAI+RNI+AA+QLA I+++SLGPNGM KLVVNH
Sbjct:    5 MGYNLASGLSGMLKEGHTSYEGVDEAIMRNIDAARQLADIVKSSLGPNGMKKLVVNH 61
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BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Match: K3WHS8_GLOUD (CCT-theta n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WHS8_GLOUD)

HSP 1 Score: 90.9 bits (224), Expect = 6.090e-20
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGMNKLVVNHLD 177
            MG+N+A GL  +LKEGH  +EGVDEA+ +NI+A KQLAAI R+SLGPNGMNKLV+NHL+
Sbjct:    5 MGLNVAGGLSSLLKEGHKHFEGVDEAVAKNIDAVKQLAAITRSSLGPNGMNKLVINHLE 63
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BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Match: A0A2D4C5B0_PYTIN (CCT-theta n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5B0_PYTIN)

HSP 1 Score: 90.9 bits (224), Expect = 6.340e-20
Identity = 41/59 (69.49%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGMNKLVVNHLD 177
            MG N+A GL G+LK+GH  +EGVDEA+ +NI+A KQLAAI R+SLGPNGMNKLV+NHL+
Sbjct:  185 MGYNVAGGLSGLLKDGHKHFEGVDEAVAKNIDAVKQLAAITRSSLGPNGMNKLVINHLE 243
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BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Match: A0A2P4XJ42_9STRA (CCT-theta (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJ42_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 6.970e-20
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGMNKLVVNHLD 177
            MG+N+A GL  +LK+GH  +EGVDEA+ +NI+A KQLAAI R+SLGPNGMNKLV+NHL+
Sbjct:    5 MGLNVAGGLSSLLKDGHKHFEGVDEAVAKNIDAVKQLAAITRSSLGPNGMNKLVINHLE 63
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BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Match: A0A482UX78_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UX78_9ARCH)

HSP 1 Score: 84.3 bits (207), Expect = 1.140e-19
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGMNKLVVNHLD 177
            M +N A+G+ GMLKEG  +YEG++ AILRNI+AAK +A ++RTSLGPNGMNKLVVNHL+
Sbjct:    5 MKLNAAAGVGGMLKEGMRTYEGLEGAILRNIDAAKAIAMMVRTSLGPNGMNKLVVNHLE 63
[Close]
BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Match: A0A7R9UAA9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA9_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.160e-19
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGMNKLVVNHLD 177
            M +N A+GLQGMLK GH  YEGVDEA+ +NI+A KQLA+ + TSLGPNGMNKLVVNHL+
Sbjct:   32 MALNQAAGLQGMLKSGHQHYEGVDEAVAKNIDAVKQLASKVSTSLGPNGMNKLVVNHLE 90
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig968.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LES4_ECTSI1.800e-2893.22CCT-theta n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KSW1_9PHAE2.530e-2891.53CCT-theta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI... [more]
A0A662WPR3_9STRA6.180e-2267.80Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A7S3MCK7_9STRA7.490e-2272.88Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835Z415_9STRA7.600e-2280.70CCT-theta n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
K3WHS8_GLOUD6.090e-2069.49CCT-theta n=1 Tax=Globisporangium ultimum (strain ... [more]
A0A2D4C5B0_PYTIN6.340e-2069.49CCT-theta n=2 Tax=Pythium insidiosum TaxID=114742 ... [more]
A0A2P4XJ42_9STRA6.970e-2067.80CCT-theta (Fragment) n=1 Tax=Phytophthora palmivor... [more]
A0A482UX78_9ARCH1.140e-1967.80Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7R9UAA9_9STRA1.160e-1971.19Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig968contigC-tenellus_contig968:13656..14408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LES4
Preferred nameCCT8
PFAMsCpn60_TCP1
Model size177
Max annot lvl2759|Eukaryota
KEGG koko:K09500
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000323,GO:0001775,GO:0002199,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005813,GO:0005815,GO:0005829,GO:0005832,GO:0005856,GO:0005874,GO:0005911,GO:0006457,GO:0006458,GO:0006810,GO:0006887,GO:0006955,GO:0007338,GO:0007339,GO:0008037,GO:0008150,GO:0009506,GO:0009566,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009988,GO:0010556,GO:0010557,GO:0010604,GO:0010638,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019219,GO:0019222,GO:0019953,GO:0022414,GO:0022607,GO:0030054,GO:0030141,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031410,GO:0031647,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0034774,GO:0035036,GO:0035578,GO:0036230,GO:0042119,GO:0042582,GO:0042623,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044183,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044433,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045111,GO:0045321,GO:0045935,GO:0046903,GO:0046931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051054,GO:0051082,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051704,GO:0055044,GO:0060205,GO:0060255,GO:0060341,GO:0061077,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070202,GO:0070203,GO:0071840,GO:0080090,GO:0097708,GO:0099080,GO:0099081,GO:0099503,GO:0099512,GO:0099513,GO:0101002,GO:0101031,GO:1901998,GO:1903827,GO:1903829,GO:1904356,GO:1904358,GO:1904813,GO:1904814,GO:1904816,GO:1904851,GO:1904951,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Exons2
Evalue2.95e-29
EggNOG OGsKOG0362@1|root,KOG0362@2759|Eukaryota
Descriptionassists the folding of proteins upon ATP hydrolysis
Cds size177
COG categoryO
BRITEko00000,ko03036,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790195.6859202-CDS-C-tenellus_contig968:13655..138001680790195.6859202-CDS-C-tenellus_contig968:13655..13800Choristocarpus tenellus KU2346CDSC-tenellus_contig968 13656..13800 +
1680790195.702787-CDS-C-tenellus_contig968:14376..144081680790195.702787-CDS-C-tenellus_contig968:14376..14408Choristocarpus tenellus KU2346CDSC-tenellus_contig968 14377..14408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig968.7.1prot_C-tenellus_contig968.7.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig968 13656..14408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig968.7.1

>prot_C-tenellus_contig968.7.1 ID=prot_C-tenellus_contig968.7.1|Name=mRNA_C-tenellus_contig968.7.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=59bp
MGMNLASGLQGMLKEGHNSYEGVDEAILRNINAAKQLAAIIRTSLGPNGM
NKLVVNHLD
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mRNA from alignment at C-tenellus_contig968:13656..14408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig968.7.1 ID=mRNA_C-tenellus_contig968.7.1|Name=mRNA_C-tenellus_contig968.7.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=753bp|location=Sequence derived from alignment at C-tenellus_contig968:13656..14408+ (Choristocarpus tenellus KU2346)
ATGGGGATGAACCTGGCCTCCGGGCTTCAGGGTATGCTGAAGGAGGGGCA
CAATTCCTATGAGGGTGTAGATGAGGCCATATTGAGGAATATAAACGCCG
CCAAGCAGCTGGCTGCAATCATCAGAACATCCTTGGGACCAAATGGTACG
CTGATTTGGCTGCCAACTCTGTGAACCGAACTCCTCCCACACCTTTCGTG
TTGTTTGACTTGACCATCTTTGTGGACGAACATTTGTAAGGGAGTGGCTG
AAGGCTACTTGCGAGTAGCTGAGTGCTGATATTATTATGCTCTGGTCAAC
TGGTGTTGGGGCCCATCAACGCGTGCAGCTCTCTTCCCTTTAGGCAACAA
TAGGATACTTGGATAAGCCAAATTAAGATATTTTGGACAGTCTCTCTTTT
CGACGTGGGAGTGTTCCTTGTGCTTTAAATGGAGCCATCGATATTTCCCT
AATACTCTTGTCACACTAGATCGTGTGACTGTCAAGCACACACCTTCGTG
ACTAGGATCATTTGTATCATAGTGTCGAACATTCTACTAAATATGCTACT
ACCTCCTATACCGTCCACTTGCATCTGTTGGTGCTGCAGTGGGTCTAGAA
CTGCCAAACACATTGACTATTATGCTCTTCCATTGAGTATTCCTTTCTTC
GTTCTTATCTTGTTGAGAGTCCTTTTCCCCACAAGACTGAACTGTAAATC
CATCTCTTTTCTCCTTTCAAGGTATGAACAAATTGGTGGTAAACCATTTG
GAT
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Coding sequence (CDS) from alignment at C-tenellus_contig968:13656..14408+

>mRNA_C-tenellus_contig968.7.1 ID=mRNA_C-tenellus_contig968.7.1|Name=mRNA_C-tenellus_contig968.7.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=177bp|location=Sequence derived from alignment at C-tenellus_contig968:13656..14408+ (Choristocarpus tenellus KU2346)
ATGGGGATGAACCTGGCCTCCGGGCTTCAGGGTATGCTGAAGGAGGGGCA
CAATTCCTATGAGGGTGTAGATGAGGCCATATTGAGGAATATAAACGCCG
CCAAGCAGCTGGCTGCAATCATCAGAACATCCTTGGGACCAAATGGTATG
AACAAATTGGTGGTAAACCATTTGGAT
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