mRNA_C-tenellus_contig968.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig968.1.2
Unique NamemRNA_C-tenellus_contig968.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Match: A0A397ACU4_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ACU4_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.090e-44
Identity = 91/145 (62.76%), Postives = 107/145 (73.79%), Query Frame = 1
Query:   10 ADEGLTDMLRVNLTRLISYARSADPQLQRQVAEKLANEAVQPSRQAQIVALGGLKLLLPLAQSTDVEVQRLAVHALANLSVNGRAFVNFTSYH----HCSDP--AENQTLMAEEGGIEALVAILDTHHINLQRQGAKALANLGVN 426
            +DEG TD L++NL RLI+YA+SAD  LQR+VAEKLANEAV+P RQ QIV L GLKLLLPL QS D EVQRLA HALANLSVN  +  NF   H    H  D   A+NQ  MA EGGI+ L+ +L + + ++QRQ AKALANLGVN
Sbjct:   19 SDEGFTDALKINLQRLIAYAKSADANLQREVAEKLANEAVKPDRQVQIVELDGLKLLLPLTQSKDTEVQRLAAHALANLSVNCSSH-NFIWLHSTTPHLHDYYLADNQAKMANEGGIDMLIHLLQSTNEHVQRQAAKALANLGVN 162          
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Match: A0A418DV07_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418DV07_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.380e-44
Identity = 91/145 (62.76%), Postives = 107/145 (73.79%), Query Frame = 1
Query:   10 ADEGLTDMLRVNLTRLISYARSADPQLQRQVAEKLANEAVQPSRQAQIVALGGLKLLLPLAQSTDVEVQRLAVHALANLSVNGRAFVNFTSYH----HCSDP--AENQTLMAEEGGIEALVAILDTHHINLQRQGAKALANLGVN 426
            +DEG TD L++NL RLI+YA+SAD  LQR+VAEKLANEAV+P RQ QIV L GLKLLLPL QS D EVQRLA HALANLSVN  +  NF   H    H  D   A+NQ  MA EGGI+ L+ +L + + ++QRQ AKALANLGVN
Sbjct:   19 SDEGFTDALKINLQRLIAYAKSADANLQREVAEKLANEAVKPDRQVQIVELDGLKLLLPLTQSKDTEVQRLAAHALANLSVNCSSH-NFIWLHSTTPHLHDYYLADNQAKMANEGGIDMLIHLLQSTNEHVQRQAAKALANLGVN 162          
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Match: A0A3R6WRV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6WRV7_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.540e-31
Identity = 81/146 (55.48%), Postives = 100/146 (68.49%), Query Frame = 1
Query:   10 ADEGLTDMLRVNLTRLISYARSADPQLQRQVAEKLANEAVQPSRQAQIVALGGLK----LLLPLAQSTDVEVQRLAVHALANLSVN---GRAFVNFTSYHHCSDPAENQTLMAEEGGIEALVAILDTHHINLQRQGAKALANLGVN 426
            +DEG TD L++NL RLI+YA+SAD  LQR+VAEKLANEAV+  R+   V          LLLPL +S D EVQRLA HALANLSVN     A V   +  H +D   NQT MA EGGI+ L+ +L +++ ++QRQ AKALANLGVN
Sbjct: 1259 SDEGFTDALKINLQRLIAYAKSADANLQREVAEKLANEAVK--RELLSVRCSTTSSTFMLLLPLTESKDTEVQRLAAHALANLSVNCTCSAALVFVVTIFHSAD---NQTKMANEGGIDMLIHLLQSNNEHVQRQAAKALANLGVN 1399          
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Match: A0A6A5AFC1_9STRA (Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AFC1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.800e-29
Identity = 72/115 (62.61%), Postives = 82/115 (71.30%), Query Frame = 1
Query:  100 VAEKLANEAVQPSRQAQIVALGGLKLLLPLAQSTDVEVQRLAVHALANLSVNGRAFVNFTSYH----HCSDP--AENQTLMAEEGGIEALVAILDTHHINLQRQGAKALANLGVN 426
            VAEKLANEAV+P RQ QIV L GLKLLLPL QS D EVQRLA HALANLSVN  +  NF   H    H  D   A+NQ  MA EGGI+ L+ +L + + ++QRQ AKALANLGVN
Sbjct:   30 VAEKLANEAVKPDRQVQIVELDGLKLLLPLTQSKDTEVQRLAAHALANLSVNCSSH-NFIWLHSTTPHLHDYYLADNQAKMANEGGIDMLIHLLQSTNEHVQRQAAKALANLGVN 143          
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Match: F0WLI4_9STRA (Vacuolar protein 8 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WLI4_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.430e-28
Identity = 71/144 (49.31%), Postives = 92/144 (63.89%), Query Frame = 1
Query:   10 ADEGLTDMLRVNLTRLISYARSADPQLQRQVAEKLANEAVQPSRQAQIVALGGLKLLLPLAQSTDVEVQRLAVHALANLSVNGRA-----FVNFTSYHHCSDPAENQTLMAEEGGIEALVAILDTHHINLQRQGAKALANLGVN 426
            +DEG T+ L++NL RLI+YA+SAD  LQR+VAEKLANEAV+P RQ QIV L GL+LLLPL                 NLSVN +      ++    Y+     A+NQ  MA EGGIE L+ +L + + ++QRQ AKA+ANL VN
Sbjct:   18 SDEGFTEALQINLQRLIAYAKSADTSLQREVAEKLANEAVKPDRQVQIVELCGLELLLPLTXXXXXXXXXXXXXXXXNLSVNCKVEGVVEWLQINLYN----VADNQQKMAGEGGIEMLIDLLGSSNEHVQRQAAKAIANLAVN 157          
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Match: A0A5D6Y1Z7_9STRA (Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1Z7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.260e-27
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 1
Query:   10 ADEGLTDMLRVNLTRLISYARSADPQLQRQVAEKLANEAVQPSRQAQIVALGGLKLLLPLAQSTDVEVQRLAVHALANLSVN 255
            +D+  T+ LRVNL RLI YA+SAD  LQR+VAEKLANEAV+P RQ QIV L GLKLLLPL QS D EVQRLA HALANLSVN
Sbjct:   20 SDDAFTEALRVNLQRLIVYAKSADTSLQREVAEKLANEAVKPDRQVQIVELEGLKLLLPLTQSKDTEVQRLAAHALANLSVN 101          
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Match: A0A835YNM9_9STRA (Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.260e-22
Identity = 66/152 (43.42%), Postives = 80/152 (52.63%), Query Frame = 1
Query:   13 DEGLTDMLRVNLTRLISYARSADPQLQRQVAEKLANEAVQPSRQAQIVALGGLKLLLPLAQSTDVEVQRLAVHALANLSVNGRAFVNFTSYHHC--------------------SDPAENQTLMAEEGGIEALVAILDTHHINLQRQGAKAL 408
            DEGL+  LR++L+RLI+YA SAD  LQRQVAEKLANEAV+P RQ QI  LGGL+LLLPL +                             +  C                    S  A+NQ  MA+ GGIE LVAILD+    LQRQ +K+L
Sbjct:   20 DEGLSTALRIHLSRLIAYAESADVSLQRQVAEKLANEAVRPERQVQIAELGGLRLLLPLTRXXXXXXXXXXXXXXXXXXXXXXXXXRALQFERCCFLMATWRQRAVWRCVLANVSASADNQKAMADNGGIEMLVAILDSPTEALQRQASKSL 171          
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Match: D7G6Y7_ECTSI (Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y7_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.410e-20
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1
Query:   13 DEGLTDMLRVNLTRLISYARSADPQLQRQVAEKLANEAVQPSRQAQIVALGGLKLLLPL 189
            D+ LTD LR NLTRLI+YA+SADP LQRQVAEKLANEAV+PSRQAQIV LGGLKLLLPL
Sbjct:   19 DDSLTDALRSNLTRLIAYAKSADPSLQRQVAEKLANEAVKPSRQAQIVQLGGLKLLLPL 77          
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Match: A0A7S1XQE0_9STRA (Vacuolar protein 8 n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XQE0_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.390e-17
Identity = 63/160 (39.38%), Postives = 82/160 (51.25%), Query Frame = 1
Query:   13 DEGLTDMLRVNLTRLISYARSADPQLQRQVAEKLANEAVQPSRQAQIVALGGLKLLLPLAQSTDVEVQRLAVHALANLSVNGRAFVNFTS-----------------YHHCSDPAENQTLMAEEGGIEALVAILDTHHINLQRQGAKALANLGVNTHNKE 441
            + G+++++R  L+RLI YA S+D QLQR VAEKLANEAV+P+RQ QIV LGGL+LLLPL  S                                              H C  P    TL+    GIE LV +L + +  +QRQ +KA+AN+ VN  NKE
Sbjct:   72 ENGISEVMRTQLSRLIIYAESSDVQLQRDVAEKLANEAVKPARQVQIVELGGLELLLPLTHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGGESRGPPAREAPHCLQHSCVTPI--LTLL----GIEMLVHLLGSTNEAVQRQASKAIANMAVNRSNKE 225          
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Match: A0A6S9E232_HETAK (Vacuolar protein 8 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E232_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 1.010e-16
Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 1
Query:   13 DEGLTDMLRVNLTRLISYARSADPQLQRQVAEKLANEAVQPSRQAQIVALGGLKLLLPL 189
            +EGLT +LRV+L+RLI YA SAD  LQRQVAEKLANEAV+P RQ QIV LGGLKLLLPL
Sbjct:   22 EEGLTKLLRVHLSRLIVYAESADCHLQRQVAEKLANEAVKPERQVQIVELGGLKLLLPL 80          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig968.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397ACU4_9STRA1.090e-4462.76Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxI... [more]
A0A418DV07_9STRA1.380e-4462.76Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxI... [more]
A0A3R6WRV7_9STRA1.540e-3155.48Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6A5AFC1_9STRA3.800e-2962.61Vacuolar protein 8 n=1 Tax=Aphanomyces astaci TaxI... [more]
F0WLI4_9STRA1.430e-2849.31Vacuolar protein 8 n=1 Tax=Albugo laibachii Nc14 T... [more]
A0A5D6Y1Z7_9STRA1.260e-2774.39Vacuolar protein 8 n=1 Tax=Pythium brassicum TaxID... [more]
A0A835YNM9_9STRA1.260e-2243.42Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=3... [more]
D7G6Y7_ECTSI2.410e-2084.75Vacuolar protein 8 n=1 Tax=Ectocarpus siliculosus ... [more]
A0A7S1XQE0_9STRA1.390e-1739.38Vacuolar protein 8 n=4 Tax=Phaeomonas parva TaxID=... [more]
A0A6S9E232_HETAK1.010e-1677.97Vacuolar protein 8 n=1 Tax=Heterosigma akashiwo Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig968contigC-tenellus_contig968:1093..2094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog653948.CCA22147
PFAMsArm,F-box,F-box-like
Model size585
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0007275,GO:0008134,GO:0008150,GO:0009791,GO:0022622,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0090696,GO:0099402
Exons3
Evalue2.34e-29
EggNOG OGs2E3D6@1|root,2SAGE@2759|Eukaryota
DescriptionArmadillo/beta-catenin-like repeat
Cds size585
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790195.386757-CDS-C-tenellus_contig968:1092..14171680790195.386757-CDS-C-tenellus_contig968:1092..1417Choristocarpus tenellus KU2346CDSC-tenellus_contig968 1093..1417 -
1680790195.3994336-CDS-C-tenellus_contig968:1654..17811680790195.3994336-CDS-C-tenellus_contig968:1654..1781Choristocarpus tenellus KU2346CDSC-tenellus_contig968 1655..1781 -
1680790195.4117627-CDS-C-tenellus_contig968:1961..20941680790195.4117627-CDS-C-tenellus_contig968:1961..2094Choristocarpus tenellus KU2346CDSC-tenellus_contig968 1962..2094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig968.1.2prot_C-tenellus_contig968.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig968 1093..2094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig968.1.2

>prot_C-tenellus_contig968.1.2 ID=prot_C-tenellus_contig968.1.2|Name=mRNA_C-tenellus_contig968.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=195bp
MSCADEGLTDMLRVNLTRLISYARSADPQLQRQVAEKLANEAVQPSRQAQ
IVALGGLKLLLPLAQSTDVEVQRLAVHALANLSVNGRAFVNFTSYHHCSD
PAENQTLMAEEGGIEALVAILDTHHINLQRQGAKALANLGVNTHNKELIS
RAKGIPPLIRLAGSKNTSVAVEAIAALANLAVNGEEPPKKVLRD*
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mRNA from alignment at C-tenellus_contig968:1093..2094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig968.1.2 ID=mRNA_C-tenellus_contig968.1.2|Name=mRNA_C-tenellus_contig968.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1002bp|location=Sequence derived from alignment at C-tenellus_contig968:1093..2094- (Choristocarpus tenellus KU2346)
ATGTCGTGTGCAGACGAGGGACTGACAGACATGCTAAGGGTCAACTTGAC ACGACTGATCTCATATGCCAGGAGCGCCGACCCACAACTCCAACGACAGG TTGCCGAGAAGCTCGCAAACGAGGCTGTACAGCGTGAGTAGCCGATCCAT GCTAGCTGCGAATGATTGCATCATTGTGATGTATTCATATATATATATAT ATATATCACCCGGCACTGCTGTTCTCAACATGTTGTGTCACACCAAGAAA TCCCCCGCCTAACCAAGTATTTTGCTCCTACTTCACGAATCCCCCACTCG ACGTCAATTTTAGCGAGTCGACAAGCTCAGATCGTGGCTTTGGGTGGGCT AAAACTTCTTCTTCCTCTTGCACAGTCTACAGATGTCGAAGTCCAGCGTC TTGCCGTCCATGCCTTGGCCAACCTCTCAGTAAATGGTAGGTATGATAGG GTCGCTTCATAGAACGTGGAGCAAGTAGCTAAGCGGTGGAGTGTTGAGAA GGAGGAGAACCCCTATACAACGGTTCATTGTTGTCATGACATATGCCAAC CCCTACCTTATACTAAACAGGAATCACTTCTACACGAGACATAAATCTCT TCCAATTGAAGTGTTGATCTTCTCATTGTTTCTAGCAGGTACTTCACGAA ACCCAATCAAACTGACTGTACTAAAAGAGCGTTTGTTAATTTTACGTCAT ACCACCATTGCTCCGATCCAGCTGAGAACCAAACACTCATGGCGGAAGAG GGAGGAATAGAAGCATTGGTGGCCATTCTGGACACACATCATATTAATCT GCAGAGGCAGGGTGCCAAGGCTCTAGCCAACTTAGGGGTAAACACACACA ACAAAGAGTTAATCTCAAGAGCGAAGGGGATACCACCACTCATCCGTTTG GCTGGCTCTAAGAACACATCTGTTGCTGTTGAAGCCATCGCTGCCCTTGC CAACCTGGCAGTGAACGGTGAGGAACCACCCAAAAAAGTATTGAGAGATT AA
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Coding sequence (CDS) from alignment at C-tenellus_contig968:1093..2094-

>mRNA_C-tenellus_contig968.1.2 ID=mRNA_C-tenellus_contig968.1.2|Name=mRNA_C-tenellus_contig968.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=585bp|location=Sequence derived from alignment at C-tenellus_contig968:1093..2094- (Choristocarpus tenellus KU2346)
ATGTCGTGTGCAGACGAGGGACTGACAGACATGCTAAGGGTCAACTTGAC
ACGACTGATCTCATATGCCAGGAGCGCCGACCCACAACTCCAACGACAGG
TTGCCGAGAAGCTCGCAAACGAGGCTGTACAGCCGAGTCGACAAGCTCAG
ATCGTGGCTTTGGGTGGGCTAAAACTTCTTCTTCCTCTTGCACAGTCTAC
AGATGTCGAAGTCCAGCGTCTTGCCGTCCATGCCTTGGCCAACCTCTCAG
TAAATGGTAGAGCGTTTGTTAATTTTACGTCATACCACCATTGCTCCGAT
CCAGCTGAGAACCAAACACTCATGGCGGAAGAGGGAGGAATAGAAGCATT
GGTGGCCATTCTGGACACACATCATATTAATCTGCAGAGGCAGGGTGCCA
AGGCTCTAGCCAACTTAGGGGTAAACACACACAACAAAGAGTTAATCTCA
AGAGCGAAGGGGATACCACCACTCATCCGTTTGGCTGGCTCTAAGAACAC
ATCTGTTGCTGTTGAAGCCATCGCTGCCCTTGCCAACCTGGCAGTGAACG
GTGAGGAACCACCCAAAAAAGTATTGAGAGATTAA
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