mRNA_C-tenellus_contig9679.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9679.1.1
Unique NamemRNA_C-tenellus_contig9679.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Match: A0A1M2Z804_9FIRM (Thioredox_DsbH domain-containing protein n=1 Tax=Clostridiales bacterium 43-6 TaxID=1895747 RepID=A0A1M2Z804_9FIRM)

HSP 1 Score: 139 bits (350), Expect = 1.290e-40
Identity = 61/78 (78.21%), Postives = 67/78 (85.90%), Query Frame = 1
Query:   19 TNRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVGYSTCHWCHVMERESFESLAVAKILNKNFVAVKV 252
            TNRL  ETSPYLLQHAHNPV W PWGEEAF KAK EDKP+FLS+GYSTCHWCHVMERESFE   VA++LN  FV++KV
Sbjct:    5 TNRLIHETSPYLLQHAHNPVDWYPWGEEAFAKAKAEDKPVFLSIGYSTCHWCHVMERESFEDTEVAQVLNAQFVSIKV 82          
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Match: A0A0B7A9M9_9EUPU (Thioredox_DsbH domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7A9M9_9EUPU)

HSP 1 Score: 135 bits (340), Expect = 9.450e-40
Identity = 57/78 (73.08%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   19 TNRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVGYSTCHWCHVMERESFESLAVAKILNKNFVAVKV 252
            TNRL  E SPYLLQHAHNPV W PWG+EAF KAKNE+KPIFLS+GYSTCHWCHVME ESFE++ + ++LN +FV++KV
Sbjct:   12 TNRLAQEKSPYLLQHAHNPVDWHPWGDEAFKKAKNENKPIFLSIGYSTCHWCHVMEHESFENVEIGQLLNDSFVSIKV 89          
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Match: A0A6I9PSI2_9TELE (spermatogenesis-associated protein 20-like n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9PSI2_9TELE)

HSP 1 Score: 138 bits (347), Expect = 1.310e-39
Identity = 61/78 (78.21%), Postives = 66/78 (84.62%), Query Frame = 1
Query:   19 TNRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVGYSTCHWCHVMERESFESLAVAKILNKNFVAVKV 252
            TNRL  E SPYLLQHAHNPV W PWG+EAF KAK+EDKPIFLSVGYSTCHWCHVMERESFE   + KIL+ NFV +KV
Sbjct:   84 TNRLSLERSPYLLQHAHNPVDWYPWGKEAFDKAKSEDKPIFLSVGYSTCHWCHVMERESFEDEEIGKILSDNFVCIKV 161          
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Match: A0A382U517_9ZZZZ (Thioredox_DsbH domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382U517_9ZZZZ)

HSP 1 Score: 137 bits (344), Expect = 1.510e-39
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   19 TNRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVGYSTCHWCHVMERESFESLAVAKILNKNFVAVK 249
            TNRL  E SPYLLQHAHNPV W PWG+EAF KAK EDKPIFLS+GYSTCHWCHVMERESFE+  V  +LNK+FV +K
Sbjct:   58 TNRLAKEKSPYLLQHAHNPVDWFPWGKEAFAKAKKEDKPIFLSIGYSTCHWCHVMERESFENEEVGALLNKHFVCIK 134          
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Match: A0A1Y3PTU1_9BACI (Thioredox_DsbH domain-containing protein n=1 Tax=Bacillus thermozeamaize TaxID=230954 RepID=A0A1Y3PTU1_9BACI)

HSP 1 Score: 135 bits (341), Expect = 2.160e-39
Identity = 61/77 (79.22%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   22 NRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVGYSTCHWCHVMERESFESLAVAKILNKNFVAVKV 252
            NRL  E SPYLLQHA+NPV W PWG EAFTKAK EDKPIFLS+GYSTCHWCHVMERESFE   VA ILN++FV VKV
Sbjct:   10 NRLANEKSPYLLQHAYNPVDWYPWGNEAFTKAKEEDKPIFLSIGYSTCHWCHVMERESFEDPEVAGILNRHFVPVKV 86          
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Match: A0A3B9UVU9_CLOSP (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Clostridium sp. TaxID=1506 RepID=A0A3B9UVU9_CLOSP)

HSP 1 Score: 134 bits (336), Expect = 5.690e-39
Identity = 59/77 (76.62%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   22 NRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVGYSTCHWCHVMERESFESLAVAKILNKNFVAVKV 252
            NRL  E SPYLLQHAHNPV W PWGEEAF KA+ E+KPIFLS+GYSTCHWCHVME ESFE   VAK+LN N+VA+KV
Sbjct:   15 NRLINEKSPYLLQHAHNPVDWYPWGEEAFEKARRENKPIFLSIGYSTCHWCHVMEGESFEDEEVAKVLNDNYVAIKV 91          
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Match: D7FVT0_ECTSI (Thioredox_DsbH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVT0_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 5.850e-39
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1
Query:   22 NRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVGYSTCHWCHVMERESFESLAVAKILNKNFVAVKV 252
            NRL  ETSPYLLQHAHNPV W+PWG+EAF++AK EDKPIFLSVGYSTCHWCHVMERESFES  VAK+LN+NFV++KV
Sbjct:   24 NRLAEETSPYLLQHAHNPVDWMPWGQEAFSRAKEEDKPIFLSVGYSTCHWCHVMERESFESQTVAKVLNENFVSIKV 100          
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Match: A0A7X8CGC3_9DELT (DUF255 domain-containing protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7X8CGC3_9DELT)

HSP 1 Score: 133 bits (334), Expect = 1.080e-38
Identity = 59/83 (71.08%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    7 GAEP-TNRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVGYSTCHWCHVMERESFESLAVAKILNKNFVAVKV 252
            G +P TNRL  E SPYLLQHA NPV W PWGEEAF KA  EDKP+FLS+GY+TCHWCHVME ESFE + VAK+LN+N V +KV
Sbjct:   11 GVKPMTNRLSQEKSPYLLQHADNPVDWYPWGEEAFKKANEEDKPVFLSIGYATCHWCHVMEHESFEDMEVAKLLNENAVCIKV 93          
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Match: A0A2V5KY48_9BACT (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V5KY48_9BACT)

HSP 1 Score: 133 bits (334), Expect = 1.290e-38
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   10 AEPTNRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVGYSTCHWCHVMERESFESLAVAKILNKNFVAVKV 252
            +E TNRL  E SPYLLQHAHNPV W PWGEEAF KA+ E+KPIFLSVGYSTCHWCHVM  ESFES  VA I+N+ FV +KV
Sbjct:   29 SEHTNRLAQEKSPYLLQHAHNPVDWYPWGEEAFDKARRENKPIFLSVGYSTCHWCHVMAHESFESEDVATIMNREFVNIKV 109          
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Match: A0A0S7ET02_9TELE (SPT20 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7ET02_9TELE)

HSP 1 Score: 134 bits (336), Expect = 1.840e-38
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   19 TNRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVGYSTCHWCHVMERESFESLAVAKILNKNFVAVK 249
            TNRL  E SPYLLQHAHNPV W PWG EAF KA+ EDKPIFLSVGYSTCHWCHVMERESF+   + KIL+ NFV +K
Sbjct:   51 TNRLANERSPYLLQHAHNPVDWYPWGHEAFEKARREDKPIFLSVGYSTCHWCHVMERESFKDEEIGKILSDNFVCIK 127          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9679.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1M2Z804_9FIRM1.290e-4078.21Thioredox_DsbH domain-containing protein n=1 Tax=C... [more]
A0A0B7A9M9_9EUPU9.450e-4073.08Thioredox_DsbH domain-containing protein (Fragment... [more]
A0A6I9PSI2_9TELE1.310e-3978.21spermatogenesis-associated protein 20-like n=1 Tax... [more]
A0A382U517_9ZZZZ1.510e-3976.62Thioredox_DsbH domain-containing protein (Fragment... [more]
A0A1Y3PTU1_9BACI2.160e-3979.22Thioredox_DsbH domain-containing protein n=1 Tax=B... [more]
A0A3B9UVU9_CLOSP5.690e-3976.62Thioredoxin domain-containing protein (Fragment) n... [more]
D7FVT0_ECTSI5.850e-3981.82Thioredox_DsbH domain-containing protein n=2 Tax=E... [more]
A0A7X8CGC3_9DELT1.080e-3871.08DUF255 domain-containing protein (Fragment) n=1 Ta... [more]
A0A2V5KY48_9BACT1.290e-3874.07Thioredoxin domain-containing protein (Fragment) n... [more]
A0A0S7ET02_9TELE1.840e-3875.32SPT20 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9679contigC-tenellus_contig9679:141..619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FVT0
Preferred nameSPATA20
PFAMsGlcNAc_2-epim,Thioredox_DsbH
Model size252
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0007276,GO:0007283,GO:0008150,GO:0019953,GO:0022414,GO:0032501,GO:0032504,GO:0044703,GO:0048232,GO:0048609,GO:0051704
Exons2
Evalue9.2e-40
EggNOG OGsCOG1331@1|root,KOG2244@2759|Eukaryota
Ec32 ortholog descriptionSix-hairpin glycosidase
Ec32 orthologEc-01_002020.1
EC2.7.4.9
Descriptionspermatogenesis
Cds size249
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790195.3266368-CDS-C-tenellus_contig9679:140..2221680790195.3266368-CDS-C-tenellus_contig9679:140..222Choristocarpus tenellus KU2346CDSC-tenellus_contig9679 141..222 -
1680790195.3393905-CDS-C-tenellus_contig9679:449..6161680790195.3393905-CDS-C-tenellus_contig9679:449..616Choristocarpus tenellus KU2346CDSC-tenellus_contig9679 450..616 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790195.3517866-UTR-C-tenellus_contig9679:616..6191680790195.3517866-UTR-C-tenellus_contig9679:616..619Choristocarpus tenellus KU2346UTRC-tenellus_contig9679 617..619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9679.1.1prot_C-tenellus_contig9679.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9679 141..616 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9679.1.1

>prot_C-tenellus_contig9679.1.1 ID=prot_C-tenellus_contig9679.1.1|Name=mRNA_C-tenellus_contig9679.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=83bp
MGAEPTNRLGTETSPYLLQHAHNPVAWLPWGEEAFTKAKNEDKPIFLSVG
YSTCHWCHVMERESFESLAVAKILNKNFVAVKV
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mRNA from alignment at C-tenellus_contig9679:141..619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9679.1.1 ID=mRNA_C-tenellus_contig9679.1.1|Name=mRNA_C-tenellus_contig9679.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=479bp|location=Sequence derived from alignment at C-tenellus_contig9679:141..619- (Choristocarpus tenellus KU2346)
GGAATGGGTGCTGAGCCGACGAATCGACTGGGGACAGAAACCTCCCCGTA TCTTCTTCAGCATGCCCATAATCCTGTTGCCTGGCTGCCATGGGGGGAGG AGGCCTTCACCAAGGCCAAGAATGAAGATAAACCTATCTTCCTTAGCGTG GGGTACAGCACTTGCCACTGGTAGGCTTGCAAGGGACACCATACATGCAT GGTGTATCTTTCAAGGCTCATGGCTCATGGCTCGAGGGTAGATCAATTTA CGGTCCTGCAATCCTGCAGTTATTCCCCAGCTTGTCCGGGTGCCCTCTCA AAGAGATAGATTTTCCCTGCTCAAAATTTTGTCCACTCTGACCATGATTG ATAGACAACCATGCCCCCCCCCTATCGACATCCTGTTTGTGTTCAAGGTG CCATGTGATGGAGAGGGAGAGCTTTGAGAGTTTGGCGGTTGCCAAAATTC TTAATAAGAATTTTGTTGCTGTGAAGGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig9679:141..619-

>mRNA_C-tenellus_contig9679.1.1 ID=mRNA_C-tenellus_contig9679.1.1|Name=mRNA_C-tenellus_contig9679.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=249bp|location=Sequence derived from alignment at C-tenellus_contig9679:141..619- (Choristocarpus tenellus KU2346)
ATGGGTGCTGAGCCGACGAATCGACTGGGGACAGAAACCTCCCCGTATCT
TCTTCAGCATGCCCATAATCCTGTTGCCTGGCTGCCATGGGGGGAGGAGG
CCTTCACCAAGGCCAAGAATGAAGATAAACCTATCTTCCTTAGCGTGGGG
TACAGCACTTGCCACTGGTGCCATGTGATGGAGAGGGAGAGCTTTGAGAG
TTTGGCGGTTGCCAAAATTCTTAATAAGAATTTTGTTGCTGTGAAGGTG
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