mRNA_C-tenellus_contig9668.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 214 bits (544), Expect = 9.720e-60 Identity = 114/250 (45.60%), Postives = 149/250 (59.60%), Query Frame = 1 Query: 1 AVNSRTEACPFPMPNLEPMMVKLQGAACFAKLDLFKGYWQFPLSELGQEIYTVRGED-LFSPTCVPQGALNATSHSQAQMSQVLTGLSHTICMLWVDDIILWG*DADDLVNNLDPMLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRSFEIVRELMQFLQAVNWLKIHLPHMSETVEPL--LLERRLAGVKCQSKRVASTHPIHGGDWSLEQLAVWTTAQKMISQVVELSHP 741 AVN + E P PMP+LE M +L A C+ LD+ +GYW PL+ QEI+T+ G L+SP VPQG LNATS+ Q M+ +L L+ C++WVDDI+ WG +DL+N LD +L R HHG++ A K +TT GK+Y+ + HD L GL +LR E ELMQFLQAVNWL+ LP MSE V PL LE +AG ++KRVAS I W+ + W AQ M++ V L HP Sbjct: 720 AVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKVYSKGVIEHDRDRLSGLANLRRPETAGELMQFLQAVNWLRTSLPRMSEIVAPLREFLELHMAGNPNRTKRVASNRAIAPDAWTPAMVESWERAQDMVANAVTLYHP 966
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Match: A0A6H5L028_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L028_9PHAE) HSP 1 Score: 208 bits (530), Expect = 7.180e-58 Identity = 111/249 (44.58%), Postives = 151/249 (60.64%), Query Frame = 1 Query: 7 NSRTEACPFPMPNLEPMMVKLQGAACFAKLDLFKGYWQFPLSELGQEIYTVRG-EDLFSPTCVPQGALNATSHSQAQMSQVLTGLSHTICMLWVDDIILWG*DADDLVNNLDPMLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRSFEIVRELMQFLQAVNWLKIHLPHMSETVEPL--LLERRLAGVKCQSKRVASTHPIHGGDWSLEQLAVWTTAQKMISQVVELSHPR 744 N + E P +P+ E + LQGA CF KLDL +GYWQ PL+E +EI+++ E LF PT VPQ LNAT + QA M+++L GL+ C +WVDD I WG D DL+N LD +L RL +GI+AA K F T+ GK+Y+G V DP LQGL D+R E +LMQFLQAV WL+ L ++E +EP+ LLE +A Q+K +A I W+ + W +AQ +++ V LSHP+ Sbjct: 473 NLQCEKVPIVVPSQEVQVSMLQGATCFGKLDLLQGYWQMPLAESAREIFSIATPEGLFEPTRVPQDVLNATGYFQAVMTEILQGLN---CAVWVDDDIWWGIDETDLLNTLDEILWRLQDNGIFAAAHKCPFFDTKIRWCGKVYSGGQVASDPERLQGLTDMRRPETAGKLMQFLQAVKWLRTSLSRLAEVMEPVRTLLEVNMASAPRQTKSIAPNRAIKCEAWTAGMVEAWISAQDLVAHAVALSHPK 718
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 206 bits (524), Expect = 4.690e-57 Identity = 111/250 (44.40%), Postives = 148/250 (59.20%), Query Frame = 1 Query: 1 AVNSRTEACPFPMPNLEPMMVKLQGAACFAKLDLFKGYWQFPLSELGQEIYTVRGED-LFSPTCVPQGALNATSHSQAQMSQVLTGLSHTICMLWVDDIILWG*DADDLVNNLDPMLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRSFEIVRELMQFLQAVNWLKIHLPHMSETVEPL--LLERRLAGVKCQSKRVASTHPIHGGDWSLEQLAVWTTAQKMISQVVELSHP 741 A N + E P MPN E + +L A + LDL + YWQ PL+ QEI+T+ L++P VPQG LNATS+ QA ++++L GL+ C +WVDD++ WG D DDL++ LD +L RL G+Y A K F T T GK+Y+ V HDP L GL +R E ELMQFLQAVNWL+ LP M+E V PL LE+ L G K ++KRVA I + + WT AQ ++++ V LSHP Sbjct: 818 AANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKVYSEGQVEHDPERLSGLATMRRPETAGELMQFLQAVNWLRTSLPRMAEVVWPLRVFLEQHLVGAKSRTKRVAENRAIAADALTPALVEAWTAAQDLVARAVALSHP 1064
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE) HSP 1 Score: 149 bits (376), Expect = 2.650e-37 Identity = 78/175 (44.57%), Postives = 104/175 (59.43%), Query Frame = 1 Query: 202 ALNATSHSQAQMSQVLTGLSHTICMLWVDDIILWG*DADDLVNNLDPMLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRSFEIVRELMQFLQAVNWLKIHLPHMSETVEPL--LLERRLAGVKCQSKRVASTHPIHGGDWSLEQLAVWTTAQKMISQ 720 A+ +A M+++L GL+ CM+WVDD++ WG D DL N LD +L RL GI+AA L F T+ GK+Y+G V HDP LQGL D+R E ELMQ LQAVNWL+ LP ++E VEPL LLE +A ++KR+AS I W+ WT+AQ ++ Q Sbjct: 598 AMAVPKRGRAVMTEILQGLN---CMVWVDDVVWWGIDETDLPNALDEILRRLEDKGIFAAAHMCLFFDTKIKWCGKVYSGGQVAHDPARLQGLADMRRPETAGELMQVLQAVNWLRTSLPRLAEVVEPLRRLLEEHMASAPRRTKRIASNRAIKSEAWTAGMAKAWTSAQDLVPQ 769
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA) HSP 1 Score: 149 bits (375), Expect = 3.740e-37 Identity = 82/249 (32.93%), Postives = 134/249 (53.82%), Query Frame = 1 Query: 4 VNSRTEACPFPMPNLEPMMVKLQGAACFAKLDLFKGYWQFPLSELGQEIYT-VRGEDLFSPTCVPQGALNATSHSQAQMSQVLTGLSHTICMLWVDDIILWG*DADDLVNNLDPMLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRSFEIVRELMQFLQAVNWLKIHLPHMSETVEPL--LLERRLAGVKCQSKRVASTHPIHGGDWSLEQLAVWTTAQKMISQVVELSHP 741 VN RTEA P+PMP LE ++ L+GA F LD F+GYWQ PL E QE++T + +++PT VP GA +A ++ Q + ++ L ++W+DDI+ + ++L+ LD +L R +G+ K F E GK+ + VRH P +QGL++++ + +L QFL AVNW++ +P + L +LE + + K + P+ W QLA + ++ ++V L+HP Sbjct: 518 VNERTEAMPWPMPVLEVVLSALEGAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDILGYAESEEELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVKWCGKMVSAAGVRHYPDRVQGLVEMQPSQTAGDLQQFLCAVNWMRQSIPEYNRLTAGLHAVLEEAMKAAGSRKKVKLAKFPLDKIGWGDPQLADLAAVKAVLLEMVPLAHP 766
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA) HSP 1 Score: 139 bits (351), Expect = 4.050e-35 Identity = 80/249 (32.13%), Postives = 129/249 (51.81%), Query Frame = 1 Query: 4 VNSRTEACPFPMPNLEPMMVKLQGAACFAKLDLFKGYWQFPLSELGQEIYT-VRGEDLFSPTCVPQGALNATSHSQAQMSQVLTGLSHTICMLWVDDIILWG*DADDLVNNLDPMLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRSFEIVRELMQFLQAVNWLKIHLPHMSETVEPL--LLERRLAGVKCQSKRVASTHPIHGGDWSLEQLAVWTTAQKMISQVVELSHP 741 VN RTE+ P+PMP LE ++ L+GA LD F+GYWQ PL E QE++T + +++PT VP GA +A ++ Q + ++ L + W+DDI+ + D+L+ LD +L R +G+ K F E GK + VRH +QGL++++ + +L QFL AVNW++ +P + L +LE + + K + P+ W QLA + + ++V L+HP Sbjct: 159 VNERTESMPWPMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDILGYAESEDELLQLLDQVLARCEVYGLKLHAKKCEFFEIEVKWCGKTVSAAGVRHCSDRVQGLVEMQPPQTAGDLQQFLCAVNWMRQSIPEYNRLTAGLYAVLEEAMKAAGSRKKVKLAKFPLDQIGWGDPQLADLAAVKAALLKMVPLAHP 407
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA) HSP 1 Score: 142 bits (358), Expect = 7.060e-35 Identity = 81/249 (32.53%), Postives = 130/249 (52.21%), Query Frame = 1 Query: 4 VNSRTEACPFPMPNLEPMMVKLQGAACFAKLDLFKGYWQFPLSELGQEIYT-VRGEDLFSPTCVPQGALNATSHSQAQMSQVLTGLSHTICMLWVDDIILWG*DADDLVNNLDPMLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRSFEIVRELMQFLQAVNWLKIHLPHMSETVEPL--LLERRLAGVKCQSKRVASTHPIHGGDWSLEQLAVWTTAQKMISQVVELSHP 741 VN RTEA P+PMP LE ++ L+GA F LD F+GYWQ PL E QE++T + +++PT VP GA +A ++ Q + ++ + W+DDI+ + D+L+ LD +L R +G+ K F E GK+ + VRH P QGL++++ + +L QFL A+NW++ +P + L +LE + + K + P+ W QLA + + ++V L+HP Sbjct: 426 VNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRHCPDRGQGLVEMQPPQTAGDLQQFLCAMNWMRQSIPEYNRLTAGLYAVLEEAMKAAGSRKKVKLAKFPLDQIGWGDPQLADLAAVKAALLKMVPLAHP 674
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Match: A0A6A3VHD7_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VHD7_9STRA) HSP 1 Score: 139 bits (351), Expect = 7.310e-35 Identity = 80/249 (32.13%), Postives = 130/249 (52.21%), Query Frame = 1 Query: 4 VNSRTEACPFPMPNLEPMMVKLQGAACFAKLDLFKGYWQFPLSELGQEIYT-VRGEDLFSPTCVPQGALNATSHSQAQMSQVLTGLSHTICMLWVDDIILWG*DADDLVNNLDPMLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRSFEIVRELMQFLQAVNWLKIHLPHMSETVEPL--LLERRLAGVKCQSKRVASTHPIHGGDWSLEQLAVWTTAQKMISQVVELSHP 741 VN RT+A P+PMP LE ++ L+GA F LD F+GYWQ PL E QE++T + +++PT VP GA +A ++ Q + ++ + W+DDI+ + D+L+ LD +L R +G+ K F E GK+ + VRH P QGL++++ + +L QFL A+NW++ +P + L +LE + + K + P+ W QLA + + ++V L+HP Sbjct: 8 VNERTKAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLVRCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRHCPDRGQGLVEMQPPQTAGDLQQFLCAMNWMRQSIPEYNRLTSGLYAVLEEAMKTAGSRKKVKLAKFPLDQISWGDPQLADLAAVKAALLKMVPLAHP 256
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Match: A0A6A3Q7S3_9STRA (Uncharacterized protein n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q7S3_9STRA) HSP 1 Score: 141 bits (356), Expect = 1.390e-34 Identity = 80/249 (32.13%), Postives = 130/249 (52.21%), Query Frame = 1 Query: 4 VNSRTEACPFPMPNLEPMMVKLQGAACFAKLDLFKGYWQFPLSELGQEIYT-VRGEDLFSPTCVPQGALNATSHSQAQMSQVLTGLSHTICMLWVDDIILWG*DADDLVNNLDPMLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRSFEIVRELMQFLQAVNWLKIHLPHMSETVEPL--LLERRLAGVKCQSKRVASTHPIHGGDWSLEQLAVWTTAQKMISQVVELSHP 741 VN RTEA P+PMP LE ++ L+GA F LD F+GYWQ PL E QE++T + +++PT VP GA +A ++ Q + ++ + W+DDI+ + D+L+ LD +L R +G+ K F + GK+ + VRH P QGL++++ + +L QFL A+NW++ +P + L +LE + + K + P+ W QLA + + ++V L+HP Sbjct: 561 VNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIDVKWCGKMVSAAGVRHCPDRGQGLVEMQPPQTAGDLQQFLCAMNWMRQSIPEYNRLTSGLYAVLEEAMKAAGSRKKVKLAKFPLDQIGWGDPQLADLAAVKAALLKMVPLAHP 809
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Match: A0A6G0JR09_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JR09_9STRA) HSP 1 Score: 139 bits (350), Expect = 3.670e-34 Identity = 80/249 (32.13%), Postives = 130/249 (52.21%), Query Frame = 1 Query: 4 VNSRTEACPFPMPNLEPMMVKLQGAACFAKLDLFKGYWQFPLSELGQEIYT-VRGEDLFSPTCVPQGALNATSHSQAQMSQVLTGLSHTICMLWVDDIILWG*DADDLVNNLDPMLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRSFEIVRELMQFLQAVNWLKIHLPHMSETVEPL--LLERRLAGVKCQSKRVASTHPIHGGDWSLEQLAVWTTAQKMISQVVELSHP 741 VN RT+A P+PMP LE ++ L+GA F LD F+GYWQ PL E QE++T + +++PT VP GA +A ++ Q + ++ + W+DDI+ + D+L+ LD +L R +G+ K F E GK+ + VRH P QGL++++ + +L QFL A+NW++ +P + L +LE + + K + P+ W QLA + + ++V L+HP Sbjct: 8 VNERTKAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLVRCEAYGLKLHAKKCEFFEIEVKWCGKMVSAAGVRHCPDRGQGLVEMQPPQTAGDLQQFLCAMNWMRQSIPEYNRLTAGLYAVLEEAMKTAGSRKKVKLAKFPLDQISWGDPQLADLAAVKAALLKMVPLAHP 256 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9668.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9668.2.1 >prot_C-tenellus_contig9668.2.1 ID=prot_C-tenellus_contig9668.2.1|Name=mRNA_C-tenellus_contig9668.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=140bp MLGRLAHHGIYAAGDKTLMFTTETTLYGKIYTGQTVRHDPVHLQGLIDLRback to top mRNA from alignment at C-tenellus_contig9668:4240..5001+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9668.2.1 ID=mRNA_C-tenellus_contig9668.2.1|Name=mRNA_C-tenellus_contig9668.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=762bp|location=Sequence derived from alignment at C-tenellus_contig9668:4240..5001+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9668:4240..5001+ >mRNA_C-tenellus_contig9668.2.1 ID=mRNA_C-tenellus_contig9668.2.1|Name=mRNA_C-tenellus_contig9668.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=420bp|location=Sequence derived from alignment at C-tenellus_contig9668:4240..5001+ (Choristocarpus tenellus KU2346)back to top |