mRNA_C-tenellus_contig9665.1.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Match: D7FXB9_ECTSI (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB9_ECTSI) HSP 1 Score: 167 bits (423), Expect = 7.540e-45 Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = 2 Query: 377 DTFELVWQNKHSIRFLNKYSRGSVVVFRNPYNPNERMVKRLIAVGGDWVRPQGDKYKLTYVPRGCCWVEGDNFAISGDSNHFGPIPLALIEAKVTRVLWPLSRAGPLNSELPEVHQHLTPEQ 742 ++ ++VWQ+K SI + Y RGS+VVFRNP++P ER+VKRLI V GDWVRP+G+K+ L VP G CWVEGDN +SGDSNHFGPIPLALIEAKVT VLWP R L +LPE+H+ L P Q Sbjct: 54 ESLDVVWQDKRSIS-RHIYERGSIVVFRNPFDPKERVVKRLIGVDGDWVRPRGNKHNLMRVPEGYCWVEGDNHGVSGDSNHFGPIPLALIEAKVTHVLWPPGRMRSLGQDLPEIHRGLNPSQ 174
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Match: A0A2K1K4M5_PHYPA (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K4M5_PHYPA) HSP 1 Score: 119 bits (298), Expect = 2.090e-27 Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 2 Query: 386 ELVWQNKHSIRFLNKYSRGSVVVFRNPYNPNERMVKRLIAVGGDWVRPQGDKYKLTYVPRGCCWVEGDNFAISGDSNHFGPIPLALIEAKVTRVLWPLSRAGPLNSELPE 715 +L++ K S+R N +SRG VVVFR+P P +VKRLIA+ GDWV G Y + VP+G CWVEGDN IS DS FGPIPL L++ KVT V+WP SR GP+ S LPE Sbjct: 59 DLLFLEKLSLRTYN-FSRGDVVVFRSPLEPKMWLVKRLIALQGDWVTVPGT-YDILQVPKGHCWVEGDNAEISLDSKSFGPIPLGLMKGKVTHVVWPPSRFGPVASHLPE 166
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Match: A0A8K1CGM7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGM7_PYTOL) HSP 1 Score: 112 bits (281), Expect = 2.690e-25 Identity = 54/106 (50.94%), Postives = 78/106 (73.58%), Query Frame = 2 Query: 401 NKHSIRFLNKYSRGSVVVFRNPYNPNERMVKRLIAVGGDWVRPQGDKYKLTYVPRGCCWVEGDNFAIS-GDSNHFGPIPLALIEAKVTRVLWPLSRAGPLNSELPE 715 +K SI+ ++Y RG VVV +P +PNE++VKRL+A+ GD + QG K + +P+G CWVEGDN A+S GDSN FGP+PLALIE++V V+WPL++ + ++PE Sbjct: 56 DKFSIQMRHRYRRGDVVVLASPEDPNEKLVKRLVAMEGDLIEDQGGKTLV--IPQGKCWVEGDNSALSDGDSNKFGPVPLALIESRVLAVVWPLNQMKIVEQKVPE 159
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Match: A0A1W0A7R3_9STRA (Mitochondrial inner membrane protease subunit n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7R3_9STRA) HSP 1 Score: 111 bits (278), Expect = 9.830e-25 Identity = 52/116 (44.83%), Postives = 77/116 (66.38%), Query Frame = 2 Query: 368 PDDDTFELVWQNKHSIRFLNKYSRGSVVVFRNPYNPNERMVKRLIAVGGDWVRPQGDKYKLTYVPRGCCWVEGDNFAISGDSNHFGPIPLALIEAKVTRVLWPLSRAGPLNSELPE 715 P D ELV +K S++ ++ +RG V+V ++P +P+E + KRLIA+ GDWV +G + VP G CW+EGDN +S DSN FG +P+ALIEA+V V+WPL+ + ++ PE Sbjct: 60 PSDTDRELVLLDKFSVQVAHRVARGDVIVLKSPSDPSELLTKRLIAIEGDWV--EGRSGRRVVVPAGKCWIEGDNGELSDDSNSFGCVPMALIEARVAAVVWPLNHLRVIRNQYPE 173
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Match: A0A6P8I7B3_ACTTE (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8I7B3_ACTTE) HSP 1 Score: 111 bits (278), Expect = 3.190e-24 Identity = 53/125 (42.40%), Postives = 81/125 (64.80%), Query Frame = 2 Query: 368 PDDDTFELVWQNKHSIRFLNKYSRGSVVVFRNPYNPNERMVKRLIAVGGDWVRPQGDKYKLTYVPRGCCWVEGDNFAISGDSNHFGPIPLALIEAKVTRVLWPLSRAGPLNSELPEVHQHLTPEQ 742 PD + ++V +K +IR +RG VV +P++PN ++KR+I + GD ++ G K K +P+G CWVEGDN A S DSN FGP+ + LI+AK T +LWP+ R G ++S +P+ + LT E+ Sbjct: 46 PDHRSLDVVMLSKIAIRNFQGINRGDVVSIVDPHDPNIVLIKRIIGLQGDTIKTLGYKNKYVKIPKGHCWVEGDNNAHSMDSNTFGPVAVGLIQAKATYILWPIHRWGKIHSMIPDSREPLTSEE 170
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Match: A0A176VCD5_MARPO (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VCD5_MARPO) HSP 1 Score: 109 bits (272), Expect = 6.010e-24 Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 371 DDDTFELVWQNKHSIRFLNKYSRGSVVVFRNPYNPNERMVKRLIAVGGDWVRPQGDKYKLTYVPRGCCWVEGDNFAISGDSNHFGPIPLALIEAKVTRVLWPLSRAGPLNSELP 712 D + ++V K +R + ++RG VV FR+P +P E +VKRLIA+ DW+ G Y++ +P+G CWVEGDN +S DS FGPIP+AL+ +VT V+WP R GP+ S+ P Sbjct: 53 DSPSKDIVVVEKFCLRNFS-FTRGDVVAFRSPQDPKEYLVKRLIALQEDWITVPGT-YEILQIPKGHCWVEGDNVDVSLDSKEFGPIPIALMRGRVTHVVWPPQRLGPVESKYP 164
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Match: W4FVS4_9STRA (Mitochondrial inner membrane protease subunit n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FVS4_9STRA) HSP 1 Score: 108 bits (270), Expect = 8.510e-24 Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = 2 Query: 356 YSTRPDDDTFELVWQNKHSIRFLNKYSRGSVVVFRNPYNPNERMVKRLIAVGGDWVRPQGDKYKLTYVPRGCCWVEGDNFAISGDSNHFGPIPLALIEAKVTRVLWPLSRAGPLNSELP 712 Y+T DT L +K S++ L++ RG VVV ++P +P E + KRLIA+ GDWV +G K VP G CWVEGDN +S DSN FG +P+ALIEA+V +LWP S + + LP Sbjct: 47 YATTTKGDTVLL---DKFSVQMLHRLVRGDVVVLKSPTDPGELLTKRLIALEGDWV--EGRNGKRVVVPPGKCWVEGDNEDVSEDSNEFGSVPMALIEARVVAILWPPSHVAKIPNALP 160
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Match: D8RE78_SELML (Mitochondrial inner membrane protease subunit 2 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RE78_SELML) HSP 1 Score: 107 bits (268), Expect = 1.770e-23 Identity = 54/94 (57.45%), Postives = 68/94 (72.34%), Query Frame = 2 Query: 431 YSRGSVVVFRNPYNPNERMVKRLIAVGGDWVRPQGDKYKLTYVPRGCCWVEGDNFAISGDSNHFGPIPLALIEAKVTRVLWPLSRAGPLNSELP 712 +SRG VVV R+P+ P MVKRLIAV GD +R G K +L VP+G CWVEGDN +S DS + GPIP+AL++A+VTRV+WP R G + S LP Sbjct: 64 FSRGDVVVLRSPHEPQYWMVKRLIAVEGDMLRVPG-KRELVQVPKGRCWVEGDNANVSLDSRNMGPIPMALLKARVTRVVWPPERFGRVESILP 156
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Match: A0A2I4F2I5_JUGRE (Mitochondrial inner membrane protease subunit 2 n=4 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4F2I5_JUGRE) HSP 1 Score: 107 bits (267), Expect = 2.280e-23 Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = 2 Query: 428 KYSRGSVVVFRNPYNPNERMVKRLIAVGGDWVRPQGDKYKLTYVPRGCCWVEGDNFAISGDSNHFGPIPLALIEAKVTRVLWPLSRAGPLNSELPE 715 K+S G VVVFR+P N E+ +KR+IA+ GDW+ + Y + +P G CWVEGDN A S DS FGPIPLAL++ +VT ++WP R G + P+ Sbjct: 66 KFSHGDVVVFRSPSNYKEKHIKRIIALPGDWIGTTHNSYDVLKIPEGHCWVEGDNSASSMDSRSFGPIPLALVQGRVTHIVWPPERLGVVERRYPK 161
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Match: A9P2L1_PICSI (Mitochondrial inner membrane protease subunit 2 n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P2L1_PICSI) HSP 1 Score: 107 bits (267), Expect = 2.480e-23 Identity = 48/96 (50.00%), Postives = 63/96 (65.62%), Query Frame = 2 Query: 428 KYSRGSVVVFRNPYNPNERMVKRLIAVGGDWVRPQGDKYKLTYVPRGCCWVEGDNFAISGDSNHFGPIPLALIEAKVTRVLWPLSRAGPLNSELPE 715 K+S G V+VFR+PY NE VKRLIA+ GDW+ G Y + +P G CWVEGDN S DS FGP+PL L++ +VT V+WP R G + + P+ Sbjct: 70 KFSHGDVIVFRSPYEHNEWHVKRLIALPGDWISVPGT-YDILKIPEGHCWVEGDNAVSSLDSRSFGPVPLGLVQGRVTHVIWPPERVGAIEKQYPK 164 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9665.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9665.1.2 >prot_C-tenellus_contig9665.1.2 ID=prot_C-tenellus_contig9665.1.2|Name=mRNA_C-tenellus_contig9665.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=176bp MVKKPRGANIVKSLPYLNVRGSLLVLSQPCAFTMPLVYSTRPDDDTFELVback to top mRNA from alignment at C-tenellus_contig9665:148..3338- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9665.1.2 ID=mRNA_C-tenellus_contig9665.1.2|Name=mRNA_C-tenellus_contig9665.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3191bp|location=Sequence derived from alignment at C-tenellus_contig9665:148..3338- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9665:148..3338- >mRNA_C-tenellus_contig9665.1.2 ID=mRNA_C-tenellus_contig9665.1.2|Name=mRNA_C-tenellus_contig9665.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=528bp|location=Sequence derived from alignment at C-tenellus_contig9665:148..3338- (Choristocarpus tenellus KU2346)back to top |