mRNA_C-tenellus_contig9664.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9664.1.1
Unique NamemRNA_C-tenellus_contig9664.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Match: D7G0P1_ECTSI (Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0P1_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 4.020e-55
Identity = 89/117 (76.07%), Postives = 99/117 (84.62%), Query Frame = 1
Query:   19 RWLIANAKAGDSLFMHYSGHGGSMADDNGDEADNKDETIVPVDYTSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGTIQAVEAGSMSSVLEPNLNFDLEK 369
            RWL A+AKAGDSLFMHYSGHGGS+ D +GDEADN DET+VPVDY S+GQI DDE+LKELV  LPEGVTLTVVMDCCHSGSILDLPY +KAD+GTI AVEAG +SS +  N  FD  K
Sbjct:  221 RWLTADAKAGDSLFMHYSGHGGSVKDTSGDEADNMDETLVPVDYKSSGQITDDEILKELVMVLPEGVTLTVVMDCCHSGSILDLPYALKADEGTISAVEAGEVSSTISANPGFDFAK 337          
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Match: D8LJ59_ECTSI (Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ59_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 6.330e-49
Identity = 80/123 (65.04%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    1 SILHICRWLIANAKAGDSLFMHYSGHGGSMADDNGDEADNKDETIVPVDYTSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGTIQAVEAGSMSSVLEPNLNFDLEK 369
            +IL   +WL+  AKAGDSLFMHYSGHGGS+ D+ GDE DNKDET++PVDY  +GQI+DDE+LKELV  LPEGV L+VVMDCCHSGSILDLPY   A DG ++ VEAG  S V++   NF+++K
Sbjct:  224 NILKAIKWLVHGAKAGDSLFMHYSGHGGSVKDNTGDEEDNKDETMIPVDYMKSGQIKDDEILKELVMPLPEGVVLSVVMDCCHSGSILDLPYSFDAKDGALELVEAGG-SGVMQKKKNFNVKK 345          
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Match: A0A835YV30_9STRA (Caspase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV30_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.110e-46
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   19 RWLIANAKAGDSLFMHYSGHGGSMADDNGDEADNKDETIVPVDYTSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGTIQAVEAGSMSSVLEPNLNFDLEKV 372
            RWL+  A+AGDSLF HYSGHGGS+ DDNGDEAD  DETI+P+DY +AGQIRDD++ K LV  LP GV  T+VMDCCHSG+I+DLPY +  DD  + A++AG     L+PN +F++ K+
Sbjct:  101 RWLVDGARAGDSLFFHYSGHGGSVPDDNGDEADGMDETILPLDYLTAGQIRDDDIYKLLVKPLPHGVEFTIVMDCCHSGTIIDLPYSLSVDDELVHAMDAGQAVPQLKPNADFNMGKI 218          
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Match: A0A7S0YNU0_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YNU0_9CRYP)

HSP 1 Score: 160 bits (406), Expect = 1.420e-45
Identity = 77/123 (62.60%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 SILHICRWLIANAKAGDSLFMHYSGHGGSMADDNGDEADNKDETIVPVDYTSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGTIQAVEAGSMSSVLEPNLNFDLEK 369
            +IL   +WL+  A++GDSLFMHYSGHGGSM DDNGDE+D +DET+ PVDY SAGQIRDD + ++LVA LP+G  LTVVMDCCHSGSILDLPY  +A D  +QA  +G+M   + PN  FD  K
Sbjct:  238 NILQGFQWLVNGAQSGDSLFMHYSGHGGSMPDDNGDESDGRDETMCPVDYASAGQIRDDVIYEQLVAMLPDGCQLTVVMDCCHSGSILDLPYNFEASDNNLQAASSGAMPQSM-PNPGFDFSK 359          
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Match: A0A6H5JY89_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY89_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.910e-44
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = 1
Query:   58 FMHYSGHGGSMADDNGDEADNKDETIVPVDYTSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGTIQAVEAGSMSSVLEPNLNFDLEKV 372
            F +  GHGGS+ D +GDEADN DET+VPVDY S+GQI DDE+LKELV  LPEGVTLTVVMDCCHSGSILDLPY +KA++GTI AVEAG +SS +  N +FD  KV
Sbjct:   91 FRYDGGHGGSVKDTSGDEADNMDETLVPVDYKSSGQITDDEILKELVMVLPEGVTLTVVMDCCHSGSILDLPYALKANEGTISAVEAGEVSSTISANPSFDFAKV 195          
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Match: A0A7S4R0W6_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R0W6_9DINO)

HSP 1 Score: 159 bits (402), Expect = 5.640e-44
Identity = 77/118 (65.25%), Postives = 91/118 (77.12%), Query Frame = 1
Query:   19 RWLIANAKAGDSLFMHYSGHGGSMADDNGDEADNKDETIVPVDYTSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGTIQAVEAGSMSSVLEPNLNFDLEKV 372
            RWL+  A AGDSLF HYSGHG S+ DD+GDEAD KDE + PVDY SAG +RDDEV K LV  LPEGVTLT V+DCCHSG+ILDLPYM KADDG++ +V  G+ + + E N NFD  K+
Sbjct:  360 RWLVDGASAGDSLFFHYSGHGASVRDDDGDEADGKDECLCPVDYDSAGLMRDDEVFKLLVGPLPEGVTLTCVLDCCHSGTILDLPYMFKADDGSLASVADGTFNEMQE-NPNFDFGKI 476          
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Match: L1I610_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1I610_GUITC)

HSP 1 Score: 155 bits (391), Expect = 2.760e-43
Identity = 76/124 (61.29%), Postives = 93/124 (75.00%), Query Frame = 1
Query:    1 SILHICRWLIANAKAGDSLFMHYSGHGGSMADDNGDEADNKDETIVPVDYTSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGTIQAVEAGSMSSVLEPNLNFDLEKV 372
            +IL   +WL+ +AK+GD LFMHYSGHGGSM DDNGDEAD  DET+VPVDYTS GQIRDD + +ELVA LP+GV LTV+MDCCHSG+ILDLP+   A+D   Q   +G     L  N NF+ +K+
Sbjct:  250 NILDSIKWLVKDAKSGDCLFMHYSGHGGSMKDDNGDEADGMDETMVPVDYTSTGQIRDDIIFQELVAPLPQGVKLTVIMDCCHSGTILDLPFSFTANDQNTQNYTSGM---TLPMNGNFNWKKI 370          
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Match: A0A7S1H0Z8_HEMAN (Hypothetical protein n=3 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1H0Z8_HEMAN)

HSP 1 Score: 154 bits (388), Expect = 3.580e-43
Identity = 76/123 (61.79%), Postives = 91/123 (73.98%), Query Frame = 1
Query:    1 SILHICRWLIANAKAGDSLFMHYSGHGGSMADDNGDEADNKDETIVPVDYTSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGTIQAVEAGSMSSVLEPNLNFDLEK 369
            +IL   +WL  +A++GDSLFMHYSGHGGSM DDNGDE+D  DET+ PVDY  AGQIRDD + ++LV+  PEG  LTVVMDCCHSGSILDLPY  +A D  + A  +GSM   L PN +FD  K
Sbjct:  209 NILQGFQWLTEDAESGDSLFMHYSGHGGSMRDDNGDESDGMDETMCPVDYARAGQIRDDIIYEQLVSMCPEGCQLTVVMDCCHSGSILDLPYNFEASDSNLAAAASGSMPQSL-PNGSFDFNK 330          
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Match: A0A7S0EWY7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EWY7_9CRYP)

HSP 1 Score: 154 bits (388), Expect = 6.790e-43
Identity = 76/124 (61.29%), Postives = 92/124 (74.19%), Query Frame = 1
Query:    1 SILHICRWLIANAKAGDSLFMHYSGHGGSMADDNGDEADNKDETIVPVDYTSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGTIQAVEAGSMSSVLEPNLNFDLEKV 372
            +IL   +WL+ +AK+GD LFMHYSGHGGSM DDNGDEAD  DET+VPVDY SAGQIRDD + +ELVA LP+GV L V+MDCCHSG+ILDLP+  KA+D   Q    G     L  N NF+ +K+
Sbjct:  250 NILDSIKWLVKDAKSGDCLFMHYSGHGGSMKDDNGDEADGMDETMVPVDYASAGQIRDDLIFQELVAPLPQGVKLIVIMDCCHSGTILDLPFSFKANDQNTQNYTNGM---TLPMNGNFNWQKI 370          
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Match: A0A7S0MFT1_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFT1_9CRYP)

HSP 1 Score: 152 bits (383), Expect = 1.460e-42
Identity = 74/121 (61.16%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    4 ILHICRWLIANAKAGDSLFMHYSGHGGSMADDNGDEADNKDETIVPVDYTSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGTIQAVEAGSMSSVLEPNLNFDLE 366
            +L   +WL+  AK GDSLFMHYSGHGG + DD GDEAD  DET+VP+DY + GQIRDD++LKELV  LPEGV LTVVMDCCHSGSILDLPY   A +  +QA         L+PN +F++E
Sbjct:  199 VLTALKWLVQGAKEGDSLFMHYSGHGGQLRDDTGDEADGFDETLVPLDYQTKGQIRDDDLLKELVLPLPEGVLLTVVMDCCHSGSILDLPYEFTATEANMQA----GAPIALKPNSSFNME 315          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9664.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0P1_ECTSI4.020e-5576.07Metacapase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LJ59_ECTSI6.330e-4965.04Metacaspase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A835YV30_9STRA3.110e-4660.17Caspase domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S0YNU0_9CRYP1.420e-4562.60Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A6H5JY89_9PHAE1.910e-4470.48Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A7S4R0W6_9DINO5.640e-4465.25Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
L1I610_GUITC2.760e-4361.29Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S1H0Z8_HEMAN3.580e-4361.79Hypothetical protein n=3 Tax=Hemiselmis andersenii... [more]
A0A7S0EWY7_9CRYP6.790e-4361.29Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0MFT1_9CRYP1.460e-4261.16Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9664contigC-tenellus_contig9664:110..1907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJ59
Preferred nameMCA5
PFAMsPeptidase_C14
Model size372
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.04e-49
EggNOG OGsKOG1546@1|root,KOG1546@2759|Eukaryota
Descriptioncysteine-type peptidase activity
Cds size372
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790194.487549-CDS-C-tenellus_contig9664:109..1821680790194.487549-CDS-C-tenellus_contig9664:109..182Choristocarpus tenellus KU2346CDSC-tenellus_contig9664 110..182 +
1680790194.5037026-CDS-C-tenellus_contig9664:897..10161680790194.5037026-CDS-C-tenellus_contig9664:897..1016Choristocarpus tenellus KU2346CDSC-tenellus_contig9664 898..1016 +
1680790194.5131483-CDS-C-tenellus_contig9664:1727..19071680790194.5131483-CDS-C-tenellus_contig9664:1727..1907Choristocarpus tenellus KU2346CDSC-tenellus_contig9664 1728..1907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9664.1.1prot_C-tenellus_contig9664.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9664 110..1907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9664.1.1

>prot_C-tenellus_contig9664.1.1 ID=prot_C-tenellus_contig9664.1.1|Name=mRNA_C-tenellus_contig9664.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=124bp
SILHICRWLIANAKAGDSLFMHYSGHGGSMADDNGDEADNKDETIVPVDY
TSAGQIRDDEVLKELVASLPEGVTLTVVMDCCHSGSILDLPYMIKADDGT
IQAVEAGSMSSVLEPNLNFDLEKV
back to top

mRNA from alignment at C-tenellus_contig9664:110..1907+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9664.1.1 ID=mRNA_C-tenellus_contig9664.1.1|Name=mRNA_C-tenellus_contig9664.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1798bp|location=Sequence derived from alignment at C-tenellus_contig9664:110..1907+ (Choristocarpus tenellus KU2346)
TCCATATTGCATATATGCAGGTGGCTCATTGCTAACGCTAAGGCGGGTGA CAGTCTATTCATGCACTACTCCGGTGAGGACTGATTTGGATGAGATCGTG TTGCACGGGTAGAAAACTCTCCTCCATTCTACTCAAGTCTTTTCTCGCTC AAATTTCTTTTTTTGCGTATTTCATTATTATTATTATTTCATTTACTATC TTTTTTTGTCTATTGCTTTTTTTGTCCAGCGCGGGTGTACCTTTTGTCAG GGATATTTAACAAACCCTCATTTATATATATATATATATATATGAAAGTA TTTTACAGTGTTGGTTGCGGAATGTTTGAGACTGTTATGGTTTGTTTCCC TGGCCCTTTGTTCATCATCAGCAAGGATGTTTCTGTTGCCTTATCACCTA ATGGGAGCTGTCCAACATTTCAAATTCCACCAAGAAAAAAGAACAGATAA AGAGAGACGAGTCTCTTGGAATATGGTTCCCCTTTTTTTTCGTTTTTTTC TCTTCATTGTGGTTTCAAGCGTAATGCAATAGACGCAATCATTCCTTCTG CTGTACTTATGACTGTATACTCCATACTCCAGAAGTAGAATTATTCTCAA CGCACTAAATACCAAATGTTTTTCAAAAAATATAAACGAGGTGTTGATTT AAAAGGTTGTGATTTTTGTCTCTATTGCGTCATTATGCTCAAGGAATGTG TTGTGGTGGCATAAAGGTTTTCTTTCTTACCCCCCCCCCCCCTCCCCTCT TTTTTGAAATTTGTGCTGCAAAATTGAAAATATCACAGGTCATGGTGGGT CAATGGCTGATGACAATGGAGACGAAGCCGACAACAAGGACGAAACCATT GTGCCCGTCGACTACACCTCCGCAGGGCAGATAAGAGATGACGAGGTCCT CAAGGAGGTAAGTAAAACAAGGGGAAGGGAGGAGAAGGAAGAGGAAGAGG AAGGAGAGTACTGACGGTACAATCGATCAATAGCCAAGGTGTACCTTATT TGGTATTTGGTATTGTTGTGTTAAGTACAGGATGTGGAAAAGGTGGTGTA TCCCAGGACTTTCAATATTTTCCATTGATTACTTGAGCTGTAGGATGGGG AGAACAGCAAAGAGACTTGAGGATGTCGTAGAAATCTCTCCTATGTAGGA TCTTTTTTTTCAGAAGAATTTGATTGCGCCCACTCATAACAATCTGGATA TTTTATTTTATTTTTGAACAGAAATGTTTTCAAATTGTTGTTGTCTATCA CCCAAAAAATTATATATACATACATCCCATAGTCTGGTGGAATAACAGAT CTCATTGGGGAAAAAAAAAAATTGTCCCTTTTTCCTTTTCTTTCATTTTT TCTGAGTCAACAACTCTCAATACACTCAACAAAAAATGACACATCCTGCG GTGACCATTTGACAATGCTGTTGGGTTTTTTTTAATGGCAACCTTTCATT CTGTACAAGAATAGAATAAATATATAATTTTTTTTAATAGAAAGATGAAT TATGTTCTCGGCCGCCTTCTAAAGGTCACATTTTTTCCCCAGCATATTTA CACTACACCCTCTTGCACACCATATCATACATACATCTGTGTGTGTGTGT GTGTGCTGTTTCTAATAGCTGGTGGCTTCCCTACCTGAGGGCGTGACGCT TACAGTGGTGATGGACTGCTGCCACAGCGGGTCCATATTGGACCTCCCAT ACATGATCAAGGCAGATGACGGAACCATCCAGGCGGTGGAGGCAGGGAGC ATGTCTTCTGTGTTGGAACCTAACCTGAACTTTGACTTGGAAAAGGTG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9664:110..1907+

>mRNA_C-tenellus_contig9664.1.1 ID=mRNA_C-tenellus_contig9664.1.1|Name=mRNA_C-tenellus_contig9664.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=372bp|location=Sequence derived from alignment at C-tenellus_contig9664:110..1907+ (Choristocarpus tenellus KU2346)
TCCATATTGCATATATGCAGGTGGCTCATTGCTAACGCTAAGGCGGGTGA
CAGTCTATTCATGCACTACTCCGGTCATGGTGGGTCAATGGCTGATGACA
ATGGAGACGAAGCCGACAACAAGGACGAAACCATTGTGCCCGTCGACTAC
ACCTCCGCAGGGCAGATAAGAGATGACGAGGTCCTCAAGGAGCTGGTGGC
TTCCCTACCTGAGGGCGTGACGCTTACAGTGGTGATGGACTGCTGCCACA
GCGGGTCCATATTGGACCTCCCATACATGATCAAGGCAGATGACGGAACC
ATCCAGGCGGTGGAGGCAGGGAGCATGTCTTCTGTGTTGGAACCTAACCT
GAACTTTGACTTGGAAAAGGTG
back to top