mRNA_C-tenellus_contig9656.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9656.3.1
Unique NamemRNA_C-tenellus_contig9656.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Match: D7FW88_ECTSI (40S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW88_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.220e-36
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGESDVYALAGYLR 180
            MQNEAGSNVDLYIPRKCSWTNRLLQAKDH+STQINVGKLDP+SGTFTGESDVYALAGYLR
Sbjct:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHSSTQINVGKLDPVSGTFTGESDVYALAGYLR 60
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BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Match: B8BZU9_THAPS (40S ribosomal protein S21 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZU9_THAPS)

HSP 1 Score: 104 bits (259), Expect = 6.600e-28
Identity = 45/62 (72.58%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGESDVYALAGYLRRK 186
            MQNE G NVDLYIPRKCSWTNRL++AKDH S QINV  +DP++G FTGES  YA+AGY+R K
Sbjct:    1 MQNENGENVDLYIPRKCSWTNRLIRAKDHGSVQINVANVDPVTGLFTGESTAYAMAGYIRDK 62
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BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Match: A0A1Z5KP36_FISSO (40S ribosomal protein S21 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KP36_FISSO)

HSP 1 Score: 101 bits (251), Expect = 1.090e-26
Identity = 43/62 (69.35%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGESDVYALAGYLRRK 186
            MQNE+G NVDLY+PRKCS+TNRL+QAKDHA+ QINV  +DP++G  TG+S+VY LAGY+R K
Sbjct:    1 MQNESGQNVDLYVPRKCSYTNRLIQAKDHAAVQINVANVDPVTGIMTGDSNVYCLAGYIRFK 62
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BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Match: G4ZUD9_PHYSP (40S ribosomal protein S21 n=7 Tax=Peronosporaceae TaxID=4777 RepID=G4ZUD9_PHYSP)

HSP 1 Score: 99.4 bits (246), Expect = 5.510e-26
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGESDVYALAGYLR 180
            MQNEAG ++D+YIPRKCSWTNR+L AKDHAS QINVG+++  +G FTGESD YALAGY+R
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNA-NGVFTGESDTYALAGYIR 59
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BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Match: A0A835Z072_9STRA (40S ribosomal protein S21 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z072_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.340e-26
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGESDVYALAGYLRR 183
            MQNE+G +VDLY+PRKCSWTNRLL AKDHAS QINV K+DP +G  TG  +V+ALAG+LRR
Sbjct:    1 MQNESGKDVDLYVPRKCSWTNRLLVAKDHASVQINVAKIDPQTGVATGAHEVFALAGFLRR 61
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BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Match: A0A7S0FIC7_9STRA (40S ribosomal protein S21 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FIC7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 9.250e-26
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGESDVYALAGYLRRK 186
            MQNE G NVDLY+PRKCSWTNRLL + DH S QINVG +DP++G FTGES  +A++GY+R K
Sbjct:    1 MQNENGDNVDLYVPRKCSWTNRLLTSGDHGSVQINVGNVDPVTGLFTGESTPFAISGYVRAK 62
[Close]
BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Match: A0A0P1AAL2_PLAHL (40S ribosomal protein S21 n=16 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1AAL2_PLAHL)

HSP 1 Score: 97.8 bits (242), Expect = 2.250e-25
Identity = 43/60 (71.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGESDVYALAGYLR 180
            MQNEAG ++D+YIPRKCSWTNR+L AKDHAS QINVG+++  +G FTGESD +ALAGY+R
Sbjct:    1 MQNEAGQSIDIYIPRKCSWTNRILAAKDHASVQINVGRVNA-NGVFTGESDTFALAGYIR 59
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BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Match: K3WSU9_GLOUD (40S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WSU9_GLOUD)

HSP 1 Score: 97.1 bits (240), Expect = 4.530e-25
Identity = 43/62 (69.35%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGESDVYALAGYLRRK 186
            MQNEAG ++D+YIPRKCSWTNR+L AKDHAS QINV +++  +G FTGESD +ALAGY+R K
Sbjct:    1 MQNEAGESIDIYIPRKCSWTNRILAAKDHASVQINVARVNA-NGVFTGESDTFALAGYIRSK 61
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BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Match: A0A024TLB5_9STRA (40S ribosomal protein S21 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLB5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 6.440e-25
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGESDVYALAGYLRRK 186
            MQN+AG N+D+YIPRKCSWTNR+L AKDHAS QI V K+D  +G +TG++DVYAL+GY+R K
Sbjct:    1 MQNDAGQNIDIYIPRKCSWTNRILSAKDHASVQIAVAKVDA-NGVYTGQNDVYALSGYIRAK 61
[Close]
BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Match: A0A448Z9N0_9STRA (40S ribosomal protein S21 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9N0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.080e-24
Identity = 38/61 (62.30%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    1 MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGESDVYALAGYLRR 183
            MQNEAG NVDLY+PRKC+WTNRL++AKDH+S Q+NV  +DP++G  TG++  Y L GY+R+
Sbjct:    1 MQNEAGENVDLYVPRKCNWTNRLVEAKDHSSVQVNVANVDPVTGLATGDATPYCLVGYIRK 61
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9656.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW88_ECTSI1.220e-3696.6740S ribosomal protein S21 n=2 Tax=Ectocarpus TaxID... [more]
B8BZU9_THAPS6.600e-2872.5840S ribosomal protein S21 n=1 Tax=Thalassiosira ps... [more]
A0A1Z5KP36_FISSO1.090e-2669.3540S ribosomal protein S21 n=1 Tax=Fistulifera sola... [more]
G4ZUD9_PHYSP5.510e-2673.3340S ribosomal protein S21 n=7 Tax=Peronosporaceae ... [more]
A0A835Z072_9STRA6.340e-2672.1340S ribosomal protein S21 n=1 Tax=Tribonema minus ... [more]
A0A7S0FIC7_9STRA9.250e-2667.7440S ribosomal protein S21 n=1 Tax=Minutocellus pol... [more]
A0A0P1AAL2_PLAHL2.250e-2571.6740S ribosomal protein S21 n=16 Tax=Peronosporaceae... [more]
K3WSU9_GLOUD4.530e-2569.3540S ribosomal protein S21 n=2 Tax=Pythiaceae TaxID... [more]
A0A024TLB5_9STRA6.440e-2567.7440S ribosomal protein S21 n=3 Tax=Aphanomyces TaxI... [more]
A0A448Z9N0_9STRA1.080e-2462.3040S ribosomal protein S21 n=1 Tax=Pseudo-nitzschia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9656contigC-tenellus_contig9656:2229..3339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FW88
Preferred nameRPS21
PFAMsRibosomal_S21e
Model size195
Max annot lvl2759|Eukaryota
KEGG rclassRC01978
KEGG koko:K02971,ko:K03093,ko:K03644,ko:K03955,ko:K08854,ko:K10900,ko:K13179,ko:K20168
KEGG TC3.D.1.6
KEGG ReactionR07767,R07768
KEGG Pathwayko00190,ko00785,ko01100,ko03010,ko04137,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05202,map00190,map00785,map01100,map03010,map04137,map04714,map04723,map04932,map05010,map05012,map05016,map05202
KEGG ModuleM00146,M00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000447,GO:0000460,GO:0000461,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009657,GO:0009658,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030490,GO:0030867,GO:0031090,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042127,GO:0042175,GO:0042254,GO:0042274,GO:0042788,GO:0042886,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0047485,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons3
Evalue2e-37
EggNOG OGsKOG3486@1|root,KOG3486@2759|Eukaryota
EC2.7.11.1,2.8.1.8,3.6.4.12,3.6.4.13
Descriptionendonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size195
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03009,ko03011,ko03021,ko03032,ko03041,ko03400,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790194.275703-CDS-C-tenellus_contig9656:2228..22781680790194.275703-CDS-C-tenellus_contig9656:2228..2278Choristocarpus tenellus KU2346CDSC-tenellus_contig9656 2229..2278 +
1680790194.2877822-CDS-C-tenellus_contig9656:2896..29451680790194.2877822-CDS-C-tenellus_contig9656:2896..2945Choristocarpus tenellus KU2346CDSC-tenellus_contig9656 2897..2945 +
1680790194.3022385-CDS-C-tenellus_contig9656:3243..33391680790194.3022385-CDS-C-tenellus_contig9656:3243..3339Choristocarpus tenellus KU2346CDSC-tenellus_contig9656 3244..3339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9656.3.1prot_C-tenellus_contig9656.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9656 2229..3339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9656.3.1

>prot_C-tenellus_contig9656.3.1 ID=prot_C-tenellus_contig9656.3.1|Name=mRNA_C-tenellus_contig9656.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=65bp
MQNEAGSNVDLYIPRKCSWTNRLLQAKDHASTQINVGKLDPISGTFTGES
DVYALAGYLRRKVR*
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mRNA from alignment at C-tenellus_contig9656:2229..3339+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9656.3.1 ID=mRNA_C-tenellus_contig9656.3.1|Name=mRNA_C-tenellus_contig9656.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1111bp|location=Sequence derived from alignment at C-tenellus_contig9656:2229..3339+ (Choristocarpus tenellus KU2346)
ATGCAGAACGAAGCAGGATCCAACGTCGATCTGTACATCCCCAGGAAGTG
GTGCGACTTGTTTGAATTGATTATACTTCCCAAGTCCATTGGATTTGTAG
GACGACTTTTTGACCAAGGAATACACCATTCACCGAAACTAGCAATGTTA
GCGGAATAGACTTGGTCATCCCGAGGAGAGTAGGTCATATCGTGATCTTC
CTCGTATTGTGGTTAGAGACTTGGCGTGCGTCTGTAGGTGATGAGGAACT
GGCAATTATGGAGTCCAACATAACACGCGGTTGCCCCATGTAGTCATCCA
ATATACTCGTGCACACGATTTATTTTTGACGAGTGGGCGTTTGAGTGTAG
CATTTGCTTTTTCAGTTATCACCTGAGAGAGATTGAACCCCTACGCTTCT
TGTGCGTTTGACTTACCATCTTGATACTATCTCCTAGTGGGGAGTCATTG
TTTGTCGGGAGGCAATAACAATAATTCAACTAGTCATTTTGTCTACTTCG
TGCTCGAATGGATAGTTTAATACTATGGCCTACGCGTGGAAAAATAGATA
ATGCATTTGCCTCGCTTTGTACAGGCAAGTAGCCCTAGGGTATTCATGTT
TGCCAATGCATTTGTACCTCCTTGTTCTCCCCTTCTCCCTTTTGTGCAAC
TTGGGATGTCCTACGCAGCTCCTGGACCAACCGCCTTCTGCAGGCCAAGG
ACCACGCCTCCACCCAGGTACTGGCACAGTTGAAGACCGACCGTACTTGA
GACATGTAGTGTACCACCTGGTTGAACCACTCTAATCCCATCCCTTGCCA
CACGACGTTATTATAGTCCTTCCTTACTCAACATACAAAAGTAATCACGA
AGTGATACAGCAGGATCACTAACGCCGACTTCGTTAGTTCCTTCATTGTG
TATTATCCAAGTCTCCAGACAGTTCCCAATCTAGTCGTTACTTGTCCCGC
CCACCCGTCTTTTCTCCTCACGTGTGTCGACTGGTTATTTCTTGGGTGGT
ATGGGGCGTGGCTAGATTAATGTGGGGAAGCTGGACCCTATCTCCGGCAC
CTTCACAGGGGAGTCTGATGTGTACGCTCTGGCTGGGTACCTCCGCCGTA
AGGTGAGATAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9656:2229..3339+

>mRNA_C-tenellus_contig9656.3.1 ID=mRNA_C-tenellus_contig9656.3.1|Name=mRNA_C-tenellus_contig9656.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=195bp|location=Sequence derived from alignment at C-tenellus_contig9656:2229..3339+ (Choristocarpus tenellus KU2346)
ATGCAGAACGAAGCAGGATCCAACGTCGATCTGTACATCCCCAGGAAGTG
CTCCTGGACCAACCGCCTTCTGCAGGCCAAGGACCACGCCTCCACCCAGA
TTAATGTGGGGAAGCTGGACCCTATCTCCGGCACCTTCACAGGGGAGTCT
GATGTGTACGCTCTGGCTGGGTACCTCCGCCGTAAGGTGAGATAG
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