mRNA_C-tenellus_contig9655.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9655.6.1
Unique NamemRNA_C-tenellus_contig9655.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9655.6.1 vs. uniprot
Match: D8LD13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LD13_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 9.890e-31
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = 3 
Query:  264 TGMYGTFLPCCALGTIRTQFDDSDCIFNCICLNAWIARSMIRQGYNIEGSPTADFCLTCCCYPCSVVQMLNETQHRGRI 500
            T  YG F P  A+GTIRTQ DDSD IFNC+C+N +IARS++RQ YNIEG+ +AD  LTCCC+PCS+ QMLNETQHRG +
Sbjct:  185 TCSYGFFCPMPAVGTIRTQMDDSDWIFNCLCINPFIARSLVRQSYNIEGTDSADCLLTCCCFPCSITQMLNETQHRGNV 263
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BLAST of mRNA_C-tenellus_contig9655.6.1 vs. uniprot
Match: A0A835YTR6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTR6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.660e-20
Identity = 40/77 (51.95%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:  273 YGTFLPCCALGTIRTQFDDSDCIFNCICLNAWIARSMIRQGYNIEGSPTADFCLTCCCYPCSVVQMLNETQHRGRIN 503
            Y   +P CALG++RT  D SD IFNC  LN+  AR+M+R  YNIEG+   D   +C C PC++ QM+ E QHRGR+N
Sbjct:  111 YALCMPWCALGSVRTDLDGSDWIFNCCFLNSCAARAMVRHAYNIEGTTANDVATSCFCLPCAISQMMIEVQHRGRVN 187
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BLAST of mRNA_C-tenellus_contig9655.6.1 vs. uniprot
Match: A0A7S2XYH0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYH0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.780e-18
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 3 
Query:  273 YGTFLPCCALGTIRTQFDDSDCIFNCICLNAWIARSMIRQGYNIEGSPTADFCLTCCCYPCSVVQMLNETQHRGRINVETII 518
            +G   P CA+   R+ FD S+  FNC C++  +ARS+IR+GYNIEG+   D    CCC  C+  QMLNE   RG++N  T++
Sbjct:  155 FGMCCPHCAISQARSSFDGSEFCFNCCCVSPCLARSVIREGYNIEGNCFGDLIYPCCCPSCAACQMLNEVDERGKVNKRTVV 236
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BLAST of mRNA_C-tenellus_contig9655.6.1 vs. uniprot
Match: A0A7S2V1M3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1M3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.460e-15
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 3 
Query:  216 KIEKRKNVFFVY*CFVTG--MYGTFLPCCALGTIRTQFDDSDCIFNCICLNAWIARSMIRQGYNIEGSPTADFCLTCCCYPCSVVQMLNETQHRGRINVETI 515
            ++  + ++F +  CF +   +YG   P CA+   RT FD SDC FN +C    +ARS+IR+GYNIEGS   D      C  C   Q++NE   RG++  + +
Sbjct:  122 EVPWKHSIFDI--CFNSSNFIYGCCCPSCAIAQARTDFDGSDCCFNFLCFTPCLARSVIREGYNIEGSCIMDILCPWLCVECVACQLMNEVSDRGKVTKQYV 221
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BLAST of mRNA_C-tenellus_contig9655.6.1 vs. uniprot
Match: A0A0L0DTY8_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DTY8_THETB)

HSP 1 Score: 70.1 bits (170), Expect = 3.880e-11
Identity = 30/81 (37.04%), Postives = 44/81 (54.32%), Query Frame = 3 
Query:  258 FVTGMYGTFLPCCALGTIRTQFDDSDCIFNCICLNAWIARSMIRQGYNIEGSPTADFCLTCCCYPCSVVQMLNETQHRGRI 500
            F   +Y  F PCCA+ +    +  ++ +F   C     +R+++R+GY I+ S TAD C  C C PC   QML ET  RG +
Sbjct:   39 FCDNLYALFCPCCAVASAMNAYSRTNWVFTLFCAPPAASRNIMREGYGIDSSCTADICTACFCLPCMARQMLFETSVRGEV 119
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BLAST of mRNA_C-tenellus_contig9655.6.1 vs. uniprot
Match: A0A7K9YYF2_9GALL (PLAC8 protein (Fragment) n=2 Tax=Odontophoridae TaxID=224313 RepID=A0A7K9YYF2_9GALL)

HSP 1 Score: 51.2 bits (121), Expect = 1.600e-5
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 3 
Query:  288 PCCALGTIRTQFDDSDCIFNCICLNAWIARSMIRQGYNIEGSPTADFCLTCCCYPCSVVQMLNETQHR 491
            PC A        D S+C   C+C  +   R++ R  YNI GS ++D+C+TCCC  CSV Q+  + + R
Sbjct:   23 PCLAC---EVAGDMSEC---CLCGTSVALRTLYRTRYNIPGSISSDYCITCCCPVCSVCQIKRDIKRR 84
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9655.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LD13_ECTSI9.890e-3167.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YTR6_9STRA5.660e-2051.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2XYH0_9STRA7.780e-1845.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2V1M3_9STRA7.460e-1537.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0L0DTY8_THETB3.880e-1137.04Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A7K9YYF2_9GALL1.600e-538.24PLAC8 protein (Fragment) n=2 Tax=Odontophoridae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9655contigC-tenellus_contig9655:3371..5643 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7897.ENSLACP00000000840
Preferred nameCNFN
PFAMsPLAC8
Model size524
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
GOsGO:0001533,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0016020,GO:0044424,GO:0044464,GO:0071944
Exons2
Evalue8.5e-08
EggNOG OGs2E1A8@1|root,2S8N3@2759|Eukaryota,3A6CV@33154|Opisthokonta,3BT5V@33208|Metazoa,3D6XI@33213|Bilateria,48E1B@7711|Chordata,49B58@7742|Vertebrata
Ec32 ortholog descriptionUncharacterised protein family Cys-rich
Ec32 orthologEc-01_001880.1
Descriptionkeratinization
Cds size255
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790194.0738077-UTR-C-tenellus_contig9655:3370..36391680790194.0738077-UTR-C-tenellus_contig9655:3370..3639Choristocarpus tenellus KU2346UTRC-tenellus_contig9655 3371..3639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790194.085109-CDS-C-tenellus_contig9655:3639..37771680790194.085109-CDS-C-tenellus_contig9655:3639..3777Choristocarpus tenellus KU2346CDSC-tenellus_contig9655 3640..3777 +
1680790194.0943782-CDS-C-tenellus_contig9655:5526..56431680790194.0943782-CDS-C-tenellus_contig9655:5526..5643Choristocarpus tenellus KU2346CDSC-tenellus_contig9655 5527..5643 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9655.6.1prot_C-tenellus_contig9655.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9655 3640..5643 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9655.6.1

>prot_C-tenellus_contig9655.6.1 ID=prot_C-tenellus_contig9655.6.1|Name=mRNA_C-tenellus_contig9655.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=85bp
MYGTFLPCCALGTIRTQFDDSDCIFNCICLNAWIARSMIRQGYNIEGSPT
ADFCLTCCCYPCSVVQMLNETQHRGRINVETIIR*
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mRNA from alignment at C-tenellus_contig9655:3371..5643+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9655.6.1 ID=mRNA_C-tenellus_contig9655.6.1|Name=mRNA_C-tenellus_contig9655.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2273bp|location=Sequence derived from alignment at C-tenellus_contig9655:3371..5643+ (Choristocarpus tenellus KU2346)
ATTGAAGGGAGGACTGCATATTGGATGTCAATGTTGATGGAGTCGTGTGG
GTTTCAGAGGGAGGTGGAAGAGAAGAGGAACATGTTCAGTCACAGGAGGA
ACTTCATAATCGCCTGACTTGAATTCTGATTGGTTGTCTAGAATGTACTT
TTGCGCCAATGGGACTCCGATGATACACTGTACCAGCCTGCTGTTGTTGC
ACATATTTATATATAAAAATAGAAAAGAGAAAAAATGTCTTTTTTGTGTA
TTGATGTTTTGTGACAGGTATGTATGGCACATTCCTACCATGTTGTGCGC
TGGGTACAATTAGGACGCAGTTTGATGATTCGGATTGCATATTCAACTGC
ATCTGCCTCAATGCTTGGATAGCTCGGTCCATGATTCGACAAGGGTACAA
CATTGAGGTGAGTACATACATACATACATACATGATTCGATAAGGGTACA
ACATTGAGGTGAGTACATACATACATACATACATACATACATAAACAAAC
ACATCAATAAAGTACTCCTGTGGTGGGAAAGAGGTGGGTCAAAATACCAT
AACACCGTCTTTTGGTGTACATCCCGAGTAGGGCCCCTTCTTTGTTCACA
AGGAAAATGAATTACTTTTTCTGTTGAGCGTAATGTGAAATAATGACTTT
TTTTATTACGGATGAAATATCACCGTTCCCAAAGCATCAGAATAATATTT
TGGAACAATATATGTATGTATATATTTTTGTGTTTGTGTTGTGTGTGTGT
GTGTGCTGTTGAGTACGTAAATGTTGCCAAACGGTAACAGCATCTTTTTT
CCTGATAAAGTCAGTCCCCACCCAAGCAGTAAATATATATATATATATCC
TTGACGATATGAATTTCAGAACCGGTATGTAGTCATTTGTAGAGGGCTTC
AATGATTGAAGAACAAGTCTAGGGGGAGGGGTTTTAGTGTATGACACCTT
GAGGGAAAGTAAAATAGTTGTCAGGCATACAGTGGTCAGCAGAGGACGGT
AACCCAAAGACCATTTCTGGTTCTTGTGTACACCAATATACCACAAGCTT
AACCCGTTTTTTAAAATGAAAATGGTTCCGTCTGCTCGGAGAGTCTGTTC
GATTTTTGAACAAAGTCATGCTCCAAAACATCCTACGACTTTAAAGTGAT
AAAAAAAATATGCCTCGAAAAAAAAATGATAAAAATTAATTCGAAAAGGG
GGTATATATTTTAATTTTTATAATATTGGTAATGCAGTTTACAAAAAGGG
CAACATTTTGGGGCACGAACTCTTTTGTATTCTGAAAGAACCGAATCTGA
AATATGCGTATGTTACGGAGGTGGGCTCCAAGCGTTGCATGCATTGGACA
ACATAACGCTCAACAGCATCTATGGTACCTACCCTTGATTGACATTCCAG
TTTTTAAACATGTATCATCTCGATCTGTATAATTTGTAATGCTTGTAGGT
TGGTGATCTATGGGCAGTACAGAAATGCCCCTTAGAAATCCCTAATTTAT
TGTTTATTGTTTTACAGTTACCCTGAAAATAATGATTTTTAAAAATCTGC
TTGATAGATACAGGAACTGTATGTTCCCTCTTAGGGCATATCCTCCCCTG
GTGTTGAATCAAATATCAGAACACAAGTCAGTCGTGTGTAGTCTCTAAGA
AAAAAATTTAACATTTTGGGCATATTTGGGATTTCTGGAAGGCGTTTCCT
GTGACCGCCTGTGTATATCATGTAAGGAAGAGATCTCGTTCAAAACAAAA
ACTAGGCTTGTGTTGCTGACTCTTGATCCATGAAGTGGTAAGGACAGAGT
GTCCAACATGGTTTTGGCTGTATTGTGGAAGATTAATGATTAATGCTGTC
CTGAAGTAAGGGAAGTTGGTTGGGAGCGTTGTATTGTGTTGAGGATGAAG
TAGAAGGACTTGTTTGGCACTATCCACATGCAGTGGGGNNNNNNNNNNGG
GTGGTTTTTGTGGGGGGGGAAGAGAGCGGTCTTTTTTTCCCCTTTCCCCC
TGGGGGGGGGGGGGGGGGGGGGGAATGTTCTAAGGTTCAGTGGGCGACCT
TCTAAAAACAAAATCTTCAATCTATCGATGCATCTCTCATCCATTGATAC
ACGGGCGCCCTGTCTCCTTGTAATGTTTGCTTTTCCTTCTTTTTTTTTCC
TTGCAGGGTTCACCAACAGCAGACTTCTGCCTTACATGCTGCTGCTACCC
CTGCTCAGTGGTGCAGATGCTGAATGAGACACAACACAGGGGTCGTATCA
ATGTGGAGACCATAATTCGCTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9655:3371..5643+

>mRNA_C-tenellus_contig9655.6.1 ID=mRNA_C-tenellus_contig9655.6.1|Name=mRNA_C-tenellus_contig9655.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=255bp|location=Sequence derived from alignment at C-tenellus_contig9655:3371..5643+ (Choristocarpus tenellus KU2346)
ATGTATGGCACATTCCTACCATGTTGTGCGCTGGGTACAATTAGGACGCA
GTTTGATGATTCGGATTGCATATTCAACTGCATCTGCCTCAATGCTTGGA
TAGCTCGGTCCATGATTCGACAAGGGTACAACATTGAGGGTTCACCAACA
GCAGACTTCTGCCTTACATGCTGCTGCTACCCCTGCTCAGTGGTGCAGAT
GCTGAATGAGACACAACACAGGGGTCGTATCAATGTGGAGACCATAATTC
GCTGA
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