mRNA_C-tenellus_contig96.6.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig96.6.1
Unique NamemRNA_C-tenellus_contig96.6.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Match: D8LU39_ECTSI (E3 ubiquitin-protein ligase listerin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU39_ECTSI)

HSP 1 Score: 412 bits (1058), Expect = 3.740e-123
Identity = 195/305 (63.93%), Postives = 240/305 (78.69%), Query Frame = 1 
Query:   61 GASLVSPFLTWLLFVEYCCRVAELEEKGRVAMAAFLDRAGCLGPVLETCFRVLRS-----GQLHATPLGQALTARTSCSVRLSHLNPLVPMDLARLALLVYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHVSPGIIQREVKVVEQASQRGLWDSD-EMIATASAVSRQVVAAYKKDECTLEVCIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAVLLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYRWFHTSHKNKCPICQQPWA 957
            G SL  PFLTWLL++E+C R +ELE K R A   F+ RAG L PV+E CFRVLR+     G+ ++  +G A     + +VR+S L+P  P DLARLAL VY+RTVH FPAL RSWWSDDC+RGLR WV+ FT++HVSP +IQ E +++ +A+ +G+WD   EM   ASA SRQVVA+Y K+ECTLE  IQLP +YPLR+VEVTC+ RMGV E++WR+WVLQIVTLLS+QDGSVL+AV++WKKNVDKEFEG+EPCVICY +LHP+ M LP M CKTC N FHS+CLY+WFHTSHKNKCPICQQ WA
Sbjct: 1880 GPSLTGPFLTWLLWLEHCRRASELEAKSRSAARVFVARAGALSPVMEACFRVLRASQDDGGRSNSGSIGGASRLGPAQAVRVSRLDPRKPHDLARLALAVYFRTVHVFPALSRSWWSDDCARGLRVWVADFTKRHVSPALIQIEAQIITRATDKGVWDDGGEMSVRASANSRQVVASYLKEECTLEAVIQLPPDYPLRNVEVTCSKRMGVSESRWRQWVLQIVTLLSLQDGSVLDAVMMWKKNVDKEFEGVEPCVICYSVLHPKSMDLPQMTCKTCNNRFHSSCLYKWFHTSHKNKCPICQQTWA 2184
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BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Match: A0A7S4DAB1_HETAK (E3 ubiquitin-protein ligase listerin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAB1_HETAK)

HSP 1 Score: 295 bits (755), Expect = 4.030e-91
Identity = 143/290 (49.31%), Postives = 196/290 (67.59%), Query Frame = 1 
Query:   85 LTWLLFVEYCCRVAELEEKGRVAMAAFLDRAGCLGPVLETCFRVLRSGQLHATPLGQALTARTSCSVRLSHLNPLVPMDLARLALLVYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHVSPGIIQREVKVVEQASQRGLW-DSDEMIATASAVSRQVVAAYKKDECTLEVCIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAVLLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYRWFHTSHKNKCPICQQP 951
            L  LL +++   V + ++  + A+++++     +  ++E CF  ++  QL+   +   L+A     + L+  +     D+    + V+Y+TV  FPALVR WWS DC RGL   VS FT++HV P I+QRE+  + +A   G W D+ EM    S VSR+V A Y KDEC+LEV I++P  YPL +VEV CT R+GV E +WRRWVLQIVTLL  QDGSVL+AVLLWK+NVD+EFEG++PC IC+ IL+P+  ALP + CKTC+N FHS CLY+WFHTS KNKCP+CQQP
Sbjct:   79 LACLLLMDFVASVDDSDDLAKGALSSYVSHIRLIPMIVEICFVNMQEKQLNKFKVPN-LSAMVVSEMDLAAEDS---KDMMPFCMKVFYQTVEAFPALVRHWWSHDCRRGLNGRVSRFTEEHVGPMIMQREIDKIREAEANGKWGDTSEMTVRGSKVSREVTATYMKDECSLEVVIKVPASYPLANVEVNCTRRLGVAEGRWRRWVLQIVTLLGTQDGSVLDAVLLWKQNVDREFEGVDPCPICFSILYPKDHALPTLPCKTCQNKFHSACLYKWFHTSRKNKCPLCQQP 364
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BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Match: A0A485KRY7_9STRA (E3 ubiquitin-protein ligase listerin n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KRY7_9STRA)

HSP 1 Score: 286 bits (732), Expect = 6.200e-80
Identity = 136/300 (45.33%), Postives = 193/300 (64.33%), Query Frame = 1 
Query:   73 VSPFLTWLLFVE-YCCRVAELEEKGRVAMAAFLDRAGCLGPVLETCFRVLRSGQLHATPLGQALTARTSCSVRLSHLNPLVPMDLAR----LALLVYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHVSPGIIQREVKVVEQASQRGLWDSDEMIATASAVSRQVVAAYKKDECTLEVCIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAVLLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYRWFHTSHKNKCPICQQPWA 957
            ++P L W LF+  +    + L      A+ AF+ +   LGP L  C   L++           L    +       L+ L  +D+A     LA  V+YRTV   P +VR WW+DDC+R  RSWV+ F +++VSP ++  E++ ++   +  LWD+DEM    S VSR++   Y KDECTLE+ I++P  YPLRSVEV CT R+G+ E +WRRWVLQI+ + + QDGS+L+AVLLWK NVDKEF+G+EPC IC+ IL+P+ M LP++ C+TC N +H++CLY+WF+ S KNKCPICQQP+ 
Sbjct: 1345 LAPLLVWDLFLRMFPSTTSPLVTS---ALGAFVTQHHLLGPFLTLCGHHLQAATKATASSSTTLPTAAAVDAAFPTLSTLAALDVASAVAPLAAAVFYRTVVKLPTMVRLWWNDDCTRSTRSWVAKFCEENVSPLLLVEEIRAIQVGGETALWDADEMTVRGSKVSREITTTYLKDECTLEMVIRVPPSYPLRSVEVECTKRIGISEERWRRWVLQILKVTASQDGSLLDAVLLWKSNVDKEFDGVEPCPICFSILNPKTMGLPNLQCRTCSNKYHNSCLYKWFNQSSKNKCPICQQPFC 1641
[Close]
BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Match: A0A2P4YRS2_9STRA (E3 ubiquitin-protein ligase listerin n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YRS2_9STRA)

HSP 1 Score: 269 bits (688), Expect = 5.140e-79
Identity = 114/215 (53.02%), Postives = 160/215 (74.42%), Query Frame = 1 
Query:  328 RLALLVYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHVSPGIIQREVKVVEQASQRGL-----WDSDEMIATASAVSRQVVAAYKKDECTLEVCIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAVLLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYRWFHTSHKNKCPICQQPWA 957
            +L   V++RTV   PA+VRSWW+DDCSR  RSW + + + H++P ++  E+ ++++A +  L     WD +EM    S VSR++   Y KDEC LE+ +++P  YPLR VEV CT R+G+ E++WRRWVLQI+ + S +DGS+L+AVLLWK+NVDKEFEG+EPC ICY IL+P++M LP + CKTC N +H++CLY+WF+ S KNKCPICQQP+ 
Sbjct:  329 QLGTCVFFRTVVRLPAMVRSWWNDDCSRAARSWAAKYFEDHITPSVLAAELDLIQKAGENTLTGGESWDDEEMTVKGSRVSREITTTYMKDECALEMVVRVPSSYPLRCVEVECTKRIGISEDRWRRWVLQIIRVTSSRDGSLLDAVLLWKRNVDKEFEGVEPCPICYSILNPKNMGLPSLPCKTCNNKYHNSCLYKWFNQSGKNKCPICQQPFC 543
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BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Match: A0A8K1C458_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C458_PYTOL)

HSP 1 Score: 281 bits (719), Expect = 3.460e-78
Identity = 121/220 (55.00%), Postives = 166/220 (75.45%), Query Frame = 1 
Query:  298 LNPLVPMDLARLALLVYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHVSPGIIQREVKVVEQASQRGLWDSDEMIATASAVSRQVVAAYKKDECTLEVCIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAVLLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYRWFHTSHKNKCPICQQPWA 957
            LN L P  +  +A   ++RTV   PA+VR+WW+D+C RGLRSW S + ++H++P ++  E+ ++++AS    WD DEM    S VSR++   Y KDEC LE+ I++P  YPLRSVEV CT R+G+ E++WRRWVLQI+ + S QDGS+L+AVLLWK+NVDKEFEG+EPC ICY IL+P+ M LP++ CKTC N +H++CLY+WF+ S KNKCPICQQP+ 
Sbjct: 1581 LNLLEPSFVTSIAARSFFRTVIRLPAMVRAWWNDECGRGLRSWASKYFEEHITPYVLASELAIIQKASSLNSWDVDEMTVKGSKVSREITTTYMKDECALEMVIRVPSSYPLRSVEVECTRRIGISEDRWRRWVLQIIKVTSAQDGSLLDAVLLWKQNVDKEFEGVEPCPICYSILNPKTMGLPNLSCKTCSNKYHNSCLYKWFNQSGKNKCPICQQPFT 1800
[Close]
BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Match: A0A1V9ZGZ7_9STRA (E3 ubiquitin-protein ligase listerin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGZ7_9STRA)

HSP 1 Score: 278 bits (711), Expect = 3.740e-77
Identity = 121/215 (56.28%), Postives = 166/215 (77.21%), Query Frame = 1 
Query:  313 PMDLARLALLVYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHVSPGIIQREVKVVEQASQRGLWDSDEMIATASAVSRQVVAAYKKDECTLEVCIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAVLLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYRWFHTSHKNKCPICQQPWA 957
            P  LA LA  ++YRTV   P +VR WW+D+CSR  RSWV+ F +++VSP ++Q E+  +  A+++ LWD +EM    S VSR+VV +Y KDEC+LE+ +++P  YPLRSVEV CT R+G+ E +WRRWVLQI+ + S QDGS+L+AVLLWK NVD+EF+G++PC ICY IL+P+ M LP++ CKTCKN +H++CLY+WF+ S KNKCPICQQP+ 
Sbjct: 1456 PGLLAPLAGALFYRTVVKLPTMVRLWWNDECSRSARSWVAKFCEENVSPLLLQEEIAAIHAAAEKDLWDPEEMNVRGSKVSREVVTSYIKDECSLEMVVRVPASYPLRSVEVECTKRIGISEERWRRWVLQIIKVTSSQDGSLLDAVLLWKSNVDREFDGVDPCPICYSILNPKTMGLPNLSCKTCKNKYHNSCLYKWFNQSSKNKCPICQQPFC 1670
[Close]
BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Match: A0A5D6XW30_9STRA (E3 ubiquitin-protein ligase listerin n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW30_9STRA)

HSP 1 Score: 277 bits (709), Expect = 7.290e-77
Identity = 119/203 (58.62%), Postives = 159/203 (78.33%), Query Frame = 1 
Query:  343 VYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHVSPGIIQREVKVVEQASQRGLWDSDEMIATASAVSRQVVAAYKKDECTLEVCIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAVLLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYRWFHTSHKNKCPICQQP 951
            V++RTV   PA+VR+WW+D+CSR LRSW   + + H++P I+  E++V++ ASQR  WD+DEM    S VSR++   Y KDEC LE+ I++P  YPLRSVEV CT R+G+ E++WRRWVLQI+ + + QDGS+L+AVLLWK+NVDKEFEG+EPC ICY IL+P+ M LP + CKTC N +H++CLY+WF+ S KNKCPICQQP
Sbjct: 1667 VFFRTVLRLPAMVRTWWNDECSRSLRSWAGKYFEDHITPFILASELEVIQAASQRQSWDADEMSVKGSRVSREITTTYVKDECALEMVIRVPASYPLRSVEVECTKRIGISEDRWRRWVLQIIKVTASQDGSLLDAVLLWKQNVDKEFEGVEPCPICYSILNPKTMGLPTLPCKTCANKYHNSCLYKWFNQSGKNKCPICQQP 1869
[Close]
BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Match: A0A067CAS8_SAPPC (E3 ubiquitin-protein ligase listerin n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CAS8_SAPPC)

HSP 1 Score: 275 bits (704), Expect = 3.120e-76
Identity = 116/212 (54.72%), Postives = 164/212 (77.36%), Query Frame = 1 
Query:  322 LARLALLVYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHVSPGIIQREVKVVEQASQRGLWDSDEMIATASAVSRQVVAAYKKDECTLEVCIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAVLLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYRWFHTSHKNKCPICQQPWA 957
            L+ LA  ++YRTV   P +VR WW+D+CSR  RSWV+ F ++++SP ++Q E+  +  +S++ LWD +EM    S VSR+++ +Y KDEC+LE+ I++P  YPLRSVEV CT R+G+ E +WRRWVLQI+ + S QDGS+L+AVLLWK NVD+EF+G++PC ICY IL+P+ M LP++ CKTC N +H++CLY+WF+ S KNKCPICQQP+ 
Sbjct: 1455 LSPLAAALFYRTVLKLPTMVRLWWNDECSRSARSWVAKFCEENISPLLLQEEIAAIHASSEKDLWDPEEMTVRGSKVSREIITSYIKDECSLEMVIRVPASYPLRSVEVECTKRIGISEERWRRWVLQIIKVTSSQDGSLLDAVLLWKTNVDREFDGVDPCPICYSILNPKTMGLPNLPCKTCNNKYHNSCLYKWFNQSSKNKCPICQQPFC 1666
[Close]
BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Match: A0A6G0WLG8_9STRA (E3 ubiquitin-protein ligase listerin n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLG8_9STRA)

HSP 1 Score: 275 bits (703), Expect = 4.160e-76
Identity = 133/270 (49.26%), Postives = 187/270 (69.26%), Query Frame = 1 
Query:  151 AMAAFLDRAGCLGPVLETCFRVLRSGQLHATPLGQALTARTSCSVRLSHLNPLVPMDLARLALLVYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHVSPGIIQREVKVVEQAS-QRGLWDSDEMIATASAVSRQVVAAYKKDECTLEVCIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAVLLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYRWFHTSHKNKCPICQQPWA 957
            A+ AF+ R   L P+L  C  VL+S ++    LG    A       L  L+  + +  A LA  V+YRTV   P +VR WW+D+CSR  RSWVS F ++ VSP ++  E++ ++ AS ++ LWD DEM    S VSR++   Y KDEC+LE+ I++P  YPLR+VEV CT R+G+ E +WRRW+LQI+ + + QDGS+L+AVLLWK NVDKEF+G+EPC IC+ IL+P+ M LP++ C+TC N +H++CLY+WF+ S KNKCPICQQP++
Sbjct: 1372 ALGAFVGRQKLLTPLLTLCGHVLQSSKVQ---LGSN-EAVEGAFPALDGLDREIAV--APLAAAVFYRTVVKLPTMVRLWWNDECSRSARSWVSKFCEELVSPLMLNEEIQSIQAASAEQSLWDPDEMTVRGSKVSREITTTYLKDECSLEMVIRVPPSYPLRTVEVECTKRIGISEERWRRWILQILKVTTSQDGSLLDAVLLWKSNVDKEFDGVEPCPICFSILNPKTMGLPNLPCRTCNNKYHNSCLYKWFNQSSKNKCPICQQPFS 1635
[Close]
BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Match: K3WIF3_GLOUD (E3 ubiquitin-protein ligase listerin n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIF3_GLOUD)

HSP 1 Score: 275 bits (702), Expect = 6.110e-76
Identity = 116/203 (57.14%), Postives = 158/203 (77.83%), Query Frame = 1 
Query:  343 VYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHVSPGIIQREVKVVEQASQRGLWDSDEMIATASAVSRQVVAAYKKDECTLEVCIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAVLLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYRWFHTSHKNKCPICQQP 951
            V++RTV   PA+VR+WW+D+C+R LRSW + + + H++P I+  E+ +++ ASQ   WD DEM    S VSR++   Y KDEC LE+ I++P  YPLRSVEV CT R+G+ E++WRRWVLQI+ + + QDGS+L+AVLLWK+NVDKEFEG+EPC ICY IL+P+ M LP++ CKTC N +H++CLY+WF+ S KNKCPICQQP
Sbjct: 1691 VFFRTVTRLPAMVRTWWNDECTRSLRSWAAKYFEDHITPFILSSELDIIQSASQTHSWDVDEMSVKGSRVSREITTTYVKDECALEMVIRVPASYPLRSVEVECTKRIGIAEDRWRRWVLQIIKVTASQDGSLLDAVLLWKQNVDKEFEGVEPCPICYSILNPKTMGLPNLPCKTCSNKYHNSCLYKWFNQSGKNKCPICQQP 1893
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig96.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU39_ECTSI3.740e-12363.93E3 ubiquitin-protein ligase listerin n=1 Tax=Ectoc... [more]
A0A7S4DAB1_HETAK4.030e-9149.31E3 ubiquitin-protein ligase listerin n=1 Tax=Heter... [more]
A0A485KRY7_9STRA6.200e-8045.33E3 ubiquitin-protein ligase listerin n=1 Tax=Aphan... [more]
A0A2P4YRS2_9STRA5.140e-7953.02E3 ubiquitin-protein ligase listerin n=1 Tax=Phyto... [more]
A0A8K1C458_PYTOL3.460e-7855.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZGZ7_9STRA3.740e-7756.28E3 ubiquitin-protein ligase listerin n=1 Tax=Achly... [more]
A0A5D6XW30_9STRA7.290e-7758.62E3 ubiquitin-protein ligase listerin n=1 Tax=Pythi... [more]
A0A067CAS8_SAPPC3.120e-7654.72E3 ubiquitin-protein ligase listerin n=2 Tax=Sapro... [more]
A0A6G0WLG8_9STRA4.160e-7649.26E3 ubiquitin-protein ligase listerin n=1 Tax=Aphan... [more]
K3WIF3_GLOUD6.110e-7657.14E3 ubiquitin-protein ligase listerin n=1 Tax=Globi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig96contigC-tenellus_contig96:22774..29877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LU39
PFAMszf-RING_2
Model size1859
Max annot lvl2759|Eukaryota
KEGG koko:K22377
Hectar predicted targeting categoryother localisation
Exons8
Evalue2.16e-116
EggNOG OGsCOG5219@1|root,KOG0803@2759|Eukaryota
EC2.3.2.27
Descriptionprotein ubiquitination
Cds size807
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig96.6.1prot_C-tenellus_contig96.6.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig96 23673..29724 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790190.8159268-UTR-C-tenellus_contig96:22773..236721680790190.8159268-UTR-C-tenellus_contig96:22773..23672Choristocarpus tenellus KU2346UTRC-tenellus_contig96 22774..23672 -
1680790190.925446-UTR-C-tenellus_contig96:29724..298771680790190.925446-UTR-C-tenellus_contig96:29724..29877Choristocarpus tenellus KU2346UTRC-tenellus_contig96 29725..29877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790190.8288684-CDS-C-tenellus_contig96:23672..237541680790190.8288684-CDS-C-tenellus_contig96:23672..23754Choristocarpus tenellus KU2346CDSC-tenellus_contig96 23673..23754 -
1680790190.8404298-CDS-C-tenellus_contig96:24367..244651680790190.8404298-CDS-C-tenellus_contig96:24367..24465Choristocarpus tenellus KU2346CDSC-tenellus_contig96 24368..24465 -
1680790190.8511167-CDS-C-tenellus_contig96:25146..252431680790190.8511167-CDS-C-tenellus_contig96:25146..25243Choristocarpus tenellus KU2346CDSC-tenellus_contig96 25147..25243 -
1680790190.8618996-CDS-C-tenellus_contig96:26162..262841680790190.8618996-CDS-C-tenellus_contig96:26162..26284Choristocarpus tenellus KU2346CDSC-tenellus_contig96 26163..26284 -
1680790190.87309-CDS-C-tenellus_contig96:26685..268001680790190.87309-CDS-C-tenellus_contig96:26685..26800Choristocarpus tenellus KU2346CDSC-tenellus_contig96 26686..26800 -
1680790190.8845286-CDS-C-tenellus_contig96:28280..283731680790190.8845286-CDS-C-tenellus_contig96:28280..28373Choristocarpus tenellus KU2346CDSC-tenellus_contig96 28281..28373 -
1680790190.8998623-CDS-C-tenellus_contig96:29163..292851680790190.8998623-CDS-C-tenellus_contig96:29163..29285Choristocarpus tenellus KU2346CDSC-tenellus_contig96 29164..29285 -
1680790190.9123313-CDS-C-tenellus_contig96:29646..297241680790190.9123313-CDS-C-tenellus_contig96:29646..29724Choristocarpus tenellus KU2346CDSC-tenellus_contig96 29647..29724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig96.6.1

>prot_C-tenellus_contig96.6.1 ID=prot_C-tenellus_contig96.6.1|Name=mRNA_C-tenellus_contig96.6.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=269bp
MAAFLDRAGCLGPVLETCFRVLRSGQLHATPLGQALTARTSCSVRLSHLN
PLVPMDLARLALLVYYRTVHTFPALVRSWWSDDCSRGLRSWVSAFTQKHV
SPGIIQREVKVVEQASQRGLWDSDEMIATASAVSRQVVAAYKKDECTLEV
CIQLPMEYPLRSVEVTCTHRMGVPENKWRRWVLQIVTLLSMQDGSVLNAV
LLWKKNVDKEFEGIEPCVICYGILHPRHMALPHMVCKTCKNCFHSTCLYR
WFHTSHKNKCPICQQPWA*
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mRNA from alignment at C-tenellus_contig96:22774..29877-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig96.6.1 ID=mRNA_C-tenellus_contig96.6.1|Name=mRNA_C-tenellus_contig96.6.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=7104bp|location=Sequence derived from alignment at C-tenellus_contig96:22774..29877- (Choristocarpus tenellus KU2346)
GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGAGAGAGAAGTCTGTGCCTGT
TGTTCTGGAGGGGGCATCACTTGTGTCTCCATTTTTGACATGGTTGCTCT
TTGTGGAGTATTGCTGCAGGGTGGCTGAGTTAGAGGAGAAGGGGAGAGTG
GCCATGGCAGCATTCCTGGACCGTGCTGGTTGTTTGGGACCTGTTTTGGA
GACTTGCTTCCGTGTATTGCGATCTGGACAGGTGATTGATTGCATCACAG
TTTTTGCTGATTGTGTTGACATGTTGGTTGCTTTGAATGTGTGTGTGTGT
ATGTTAATATGTGATGTGTGATATGTGATGTGTGATGTGTTTTTTTACCA
AGTGGAGCTGATTTGAGCTGATTTGATCTGATTTGATTTGAATCTGTGGG
AGTGTTTCCGTTGACGTCCACCTCGTGTTTGCAGTCAACATGGTAGAGAT
GATATGTCCAATGTTTTTTAACAAGCCTCGATACTATGTTCTGAGCATTT
TTTACCTCATTTTTTTTTATTTTGTTGCTCATGTTGAACCCTTGTCTGTG
TGTTTCTGGGTGAATGATTAATTTTGTTTGTGATCTCAATAGCTGCATGC
TACACCACTAGGCCAGGCTCTGACAGCAAGGACCTCCTGCTCAGTGAGAC
TTTCTCACCTGAACCCTCTTGTGCCCATGGACTTGGCTCGCCTAGCGCTG
TTAGTGTACTACAGGTACAGGAAGGCGGTGTCTAATGTGCATTTTTGCTG
ATACATTCTTGCTTCCTGTGTATGATATTAGTGTGATGCAGTATTGTTTT
TGAAATGACCTTTCTTGGGACTGGATAGCTATTGATAAAGTCACCGCAGC
ACTCTTTTCCTGACAAACTTGTTTGAGATATTTTATCCTTGTATCATCTA
TGGATCTATGAACTACGATGAATCTTATTATTAACTGTTGTGTCTATTGA
ATCAAAATTAACTATTGTTCATCTATTGAATGTGCTTCATATAGTTTGTG
TGCTTTAGGGTAGATATTGAGTAAGCTGTAGCTCTTTCTCTTGATATTTT
GGAAGTCATAGCCAAGGGCTACAGACTTTCTCTTTATTTTTTTTGTGTGT
AGTCTTGAGGTGTGCTTGTGTTGTAGTTGCCTTGTTCTCACCTCTTCAGA
GATATGAGTCAATCAGGATTAGTTTGATCATACCTGTTACACCTGTCTGT
GTTGGGGGTTTGGCCAAGTGTACAGTGAAGGGGTCATTACAATCACTACA
GTCATTGCATTGTTTTCATCTCCTTTTGTTTTCACCTTGTTTGCTTTAGT
ATATACAATGTTCAATATACAATATACAATATGCTTCATGTTATGTGCTA
CATGCTGTGTAGGTAGATGTTGATGTTGGTGATTTTTAGAGACATGCACT
TGGGTCAATTTTAAGGCCCCTTTAAATGAGATGCTATTATTTTTCTGCTC
AACTTGTGTTTGTTTCATCATCTGTGATCTTTTAATGTTGTGGTATACAC
ACAGGACTGTTCATACCTTTCCAGCTCTGGTTCGGTCATGGTGGTCAGAT
GATTGCAGCAGGGGTCTCAGGTCATGGGTGTCTGCCTTCACACAGAAGTG
AGAGCAGGAATCGGCACTCCAAGACTTTAATTTGATCTTTTATGCTGATT
GAAGGCTTTTTGACGTCCCCAGTGCCTCCAGCTGACTCTAGTTTATAATG
GAGAGTATTCAATAGAGTATGGTCTGATTGGGGTCTGAGAAGGTGGAGAT
AGAGCTCTTTAAAGGTTTATAGATGGGATAAATGTATTTCTTTGTTTATA
TGCATGCCACGGTATACTCAATTTCAATATACTCATTTACAATATATAAT
TCGTGATGTAGCTAACCTTGGATATAGTTTGTTTGGTGATTATTGTCAGA
TATTGATGGATAAGATACTGTGGTGATGACTTGTGATCCTGCTTGTGTTT
GTGTGGTTGATTGGGTGAGTCTGTGAGCTTTCTACTTCATCTTGTTTGGC
TTTAATGCTGTTATTGTTACTATTATTATGATATTGAAAATCACCGCTAT
TGTTATCATCACAATTCTTATATATAGCTGACTTTGACTCCTGGGCTAGT
GAATTTCATTGCCCCAACACGACTATCAGTAGAAATTATAAAAACTAGTA
ATGAGGTCTGGGGTAAATATACCATAGGTATACCCTGTTGATGATGATTT
TTTTATATTTTGACTTCTGTTTATGTTATCCCAATTGACATTCCGGCTTT
ATGTTCTGCTGCATGTATGATGTCTGTTTGCCTTTGTGGTTGAGATCTGC
AAGTGCCGTTTGGAAATTGTCACTCTCAATCTTGTCACTCTGGATCACCT
TGTGGCCAACTGTTTCTTGTGATGGATAATCTTTACTAGTATTGTCTTAC
CTACCACTTACTCACCTAAATGGCATTTGGTGAGGAGTATGTATGTATGT
CCGGTATGCCATTGTTGGTTTTAAAAATTGTAGGGATGATTAAATCAAAC
CATAATCTACAAATGAAAAAGAGCAATTGACGTATGTAATCAATAGTCTT
TGATTGTATGTGTCTATTATCTCATGTGATTGATTGTATGTGTTGATTAT
TGTCTAACGTTATTGATATATATGTGTTAATTATTATCACAAGTGATTGA
TTGTGTGCAGTACACTTTGCTGACACTTCCTCACTGTGCCTTGCTTGGAT
TCTTATGGAGTAAATATTTTTTTGGAGCTGTTTTATTCTGTAGTTGGTAC
TCACCAACCCATGAGTTTGACAACAGTCTGTGATGTGACAACAGCATCAT
AGTGCCAACCTATCAGCAGTGACTGGGCCCCCAAAATAATTTAAGCTACT
GAATGGCCTATACCTGATGCCTATACCTGATGCCTATACCTGTTGACCTG
TACCTAGGACCTCAAAGTCGTGTGCATTGTGCATGTTATTCGCCTGTGTT
GTACAGACCAGGAAGGCTTGTCGAGGTTCAAGGACACATGCTTCATGGTA
GTAGTGTCTGATACCACATACCTTCCTCTGCATGCTCTCTTTATGCCCCT
CTCTCTTTCAACCCCCATTCTTTGCAGGCACGTTAGCCCTGGTATAATCC
AGAGGGAAGTGAAGGTGGTTGAACAAGCGTCTCAAAGAGGATTGTGGGAC
TCTGATGAAATGATTGCCACAGCCAGCGCAGTCTCAAGGCAGGCAAGTTG
ATTTTCGTGACGCTTGAGTCAATCTTGGAGTTGAGGCGAGGTGTACCTTA
TTTAGGGTAAAGCATTGTATTTGCTTCCATTGATGACTCAAGTGTATGCA
CTCTGTTGACGCTGAGAATAGTGATCTCCAGCACTATACTTCCAAACCTT
TTTGGATATCCTTCGCACATGTTTAGGAAGAATGAGATTTTTTCTGGATT
TGGATCTAGGTCATTCTGGATTGTATAATTTTTATAAGGGTTGCTGGGTG
TGTAGAGGAGAAGGAGGGTGGGGGAAGCAGAAAACATACACATCACTCAG
TATTCATATCTACAAATACCATGTACAGCATCATGCTGAGAGGTTTTGTT
AGTATTGATGTGGCTTTATGTGTGTGCGTGGTGTATTTTTCAGGTGGTTG
CTGCCTACAAGAAGGATGAATGCACCCTTGAGGTTTGTATCCAGCTGCCA
ATGGAATACCCACTGCGGAGTGTGGAGGTAACATGCACTCACCGGATGGG
TGTACCTGAGAACAAGTAAGGGGTGTACCTGAGAATAAGTATGAAAGTGC
ATTTCAAGTAATGTATATTGTTTAACCTACTAAATCAGTATTTTTAAATG
AAATTTAACGGTATTGTTGAAAAGTGTTAAGTGGACAAATGTGACCTTGA
AGTCTTTTTCCGTAGTGTGTTAGTGATTCTGGCACTGTTAATGATATCTT
GTTCTCCACTAGGTGCTGTTCAGTGACAAGTCTTGGGGAGTAAACTTTTT
TTTCCCTTTGATTTTTTGTTGTCATTTACTGGGGGGGTTTTTCAAGCTTT
TTTTCTAATTTTTTTTGCTTGTCCTCTAGGATATTTTTTTACCAAATAAA
TGTAATATACTTTGAAATACTACTATGAATACTACTGATGATGATGATGG
TAAGTGTGGATTCTTTTCTGCGGCATGACCTTCCATGAAGGAGACATTTA
CAGTGATTTTGGAGGCTGCTACTAGCTGGTGACTGTTTTGCTATGCAGCT
GTATCTCTAACTGTAGGTGTTAGATTGATCTTTTCTATGGCACTATGGGC
AATACCTGTCTTGCTGTTGGCATCAATTTCATGTTGGTGCTGATGTGTCC
TCACCACGAAAAATGGTACCATCTACCTCTCCTTTTTGTCCTACTCATGC
TTGCAATGCAGTTGGTACAGTAGGGGTGATTGAGAAAAGAGTACCCGAGG
AAAGCTTTCAAAGGGCAACAAGTAACAAGCAACAAGCAACAAGCCATCTC
CTTCAGTATCTGTTACATCCTTAGAGCTTTTATGCACATACGTGTGATTC
TCGTCATGGGAGTAGTGTGAAGATGGGTATTGCAATATATATGAGAATGG
GTATTTTCCATTTGTGTTTTGAAAATATTTGTATGTTTGTGAGTGTCAAG
TGTATGTTGTTTCTTTTGGCGAATGTTGAATCAGGTGGAGACGATGGGTG
CTGCAGATTGTGACTCTCCTGTCCATGCAGGATGGCTCTGTGCTTAATGC
TGTGCTGCTATGGAAGAAAAATGTTGACAAGGTAATTGATGGCTAAATGA
TGGCTAAGCCTACTTGTTGCTAACTTCTTTATAGTTTTAATCCATGCTGA
GTTTGGAGGTATGGACAATATACTATTGATTGAGAGGGCTTTTCACTCAA
GGTATACAGTGTAAGTTAATGATTTATCTCATCATAGGTATCAAATTGCC
GCTGGATGAAGCTTGGACAAGCCTAAACAGTGGGCAACAAATAGATCTCT
TGACATCATCTATTTGATTGTGGTGCCCAAGAATTTGGGTATTGTGGTGT
GGTGGATCTTGTAGGTGTGTGGGGTGTACATGGGACACTGGTTGATATTT
GGAAGTAATAGAGGGTGGTAGTTTATGTGCTGTATTATGTATGAAATTAC
TGGGTATTAATTACCCTCGTTGTTAACACTCATTGGTTGAAGACAGACTG
CAACTAGTGTTTCGTTGACATCAGTTGAATGTGTTGATGTGTGATACAGT
CGATTGCTGCTTGCTTTGGAGTACCTGAGATGTTGAATTATTAGATTATT
ATTAGATTATTATTGTAGTTTTGATGTGTCAAATCGATATGCTGTGTAGG
TGTGTCTTTATTGAAGGGGTATCATACACGTCCACAAAGGTCTTGTCACT
TACATTCTATCTCTATATACGTATTTGATTTGTTTTGTGCCAATGGACAA
CTAACTAAACAGGAGTTTGAGGGTATTGAACCGTGTGTGATTTGCTATGG
AATACTGCATCCTCGCCACATGGCACTGCCCCATATGGTGTGCAAGACCT
GCAAGAACTGGTATGTAAGGGTAGGGGTTGGTTGTAACAACTGCACAATA
TAGATATTTTGACAGTTATTAAGATAAGACCAAGAGTAGTGTTGAACTAT
TCTATTTCTTCAAGTACTGAGTGGTGAAATGTAAACTAGTAGTTCCCCTT
GATTTTCATTGTGTTGTGGCTGTCATGTTGCCATTATCATGTTTCCTTCT
CATTCACTTTGCTGTGTCCCGATGTCTTCACATATTATACAGTACTAATA
GTGTAGAACAGTAGTAGCTCTGACCGTACACATATGTGGTTCTCTTAGTT
TGTGTTGTAGGAAGTGCCATTGTTGTGTGTACTTGGAAGTACAAAAGGGT
AGAGTTCAATGTCTACAGTGTTTTTGTTTACGAGTATGAGTAGAACTCCA
ACGGTGATCTGCATCATCATTATCGTAGAGTCTGAAAAGAATCATTACAA
CAGTGGTGTGGAGGTGCTGAGTGGAAATGGCTCATTCACCTTTTTTCCAA
GTGGGCAGTGTATACCTGTTTTTCTCTGTATTATTATTATTGTTATCAAA
ATACCACAAGAGATACATTAAGCTGACCCAGTGATCCACAAAAAACCTTC
CGCACCCCTGCTTCTTCCTTCAGTTTCCATTCAACATGCCTCTACAGGTG
GTTTCACACCAGCCACAAGAACAAGTGCCCGATCTGCCAGCAGCCATGGG
CATGAACCCACACACATCCATTACACAGTCAGAGGATGTTGCACATACAT
TGGAGCAACAGAAGATACTACTGTCAGGAGTGGCAGCGTACACATTTACA
AATACATAAAGTAGCTGGTTCACTTATCACCTACCACATAGGTTACTTGC
CATTGAGAGCAAAATATTATGTCGCAGTCAGTCCAGGCTTATTGTTGTAG
CTGAAGCATATTTTGTGTATTGTGTATTGCATAATATAAGGAGTGAAAGA
CAGCTTAGGTAGTGGCTTGCATGTCACTCTACTCTAACCAGTGTTGAGAC
CAACTTCAACTCAAAACAAAGACCTTGTGCACCCTCTAAGAGTAGTCATC
AACATTCTGCACTATTGGAGTTGGTTGTCTCAAATTTTAATGTGGACAGC
TCTAGATTATTCAAACCTAAACACATACTGGATTTCAAAACACACATCAA
TTACTTCAACTCACACATATGACCTCATTTGTAGGACCTGACCATCTTAG
CGTAACAGCTTGCGACATTTATGCTCACAGATCATTCACAGAGCCAGGTG
TTTTGTAGTGGTCCCTTACTTTTGATATATGCATTGAACCAAAAACCATT
TCTTTAATAGAGAAGGATATCTTACATCAAATATACATCCTTGGTGCAAA
TGAAATCGTGAACAATGTGCCAGGGTTGGCTAATTGTTCTCTTAAAAAGT
CTATTTACATCAATCCTGAGACATCACACTGAGACAATTTTGAGAATAAA
CAGCATAAAGAGGAAAACAAGTATCATGGACAACACTGATGCACATACAC
GCCAATGATCACCATGATCAACCTATGTTCACTATGTATTCAGAGTAGAG
GATTATGTTTTTCATTGTCCAATGTAGCAGCTGGAATATGGCAAAGCAAT
TTGT
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Coding sequence (CDS) from alignment at C-tenellus_contig96:22774..29877-

>mRNA_C-tenellus_contig96.6.1 ID=mRNA_C-tenellus_contig96.6.1|Name=mRNA_C-tenellus_contig96.6.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=807bp|location=Sequence derived from alignment at C-tenellus_contig96:22774..29877- (Choristocarpus tenellus KU2346)
ATGGCAGCATTCCTGGACCGTGCTGGTTGTTTGGGACCTGTTTTGGAGAC
TTGCTTCCGTGTATTGCGATCTGGACAGCTGCATGCTACACCACTAGGCC
AGGCTCTGACAGCAAGGACCTCCTGCTCAGTGAGACTTTCTCACCTGAAC
CCTCTTGTGCCCATGGACTTGGCTCGCCTAGCGCTGTTAGTGTACTACAG
GACTGTTCATACCTTTCCAGCTCTGGTTCGGTCATGGTGGTCAGATGATT
GCAGCAGGGGTCTCAGGTCATGGGTGTCTGCCTTCACACAGAAGCACGTT
AGCCCTGGTATAATCCAGAGGGAAGTGAAGGTGGTTGAACAAGCGTCTCA
AAGAGGATTGTGGGACTCTGATGAAATGATTGCCACAGCCAGCGCAGTCT
CAAGGCAGGTGGTTGCTGCCTACAAGAAGGATGAATGCACCCTTGAGGTT
TGTATCCAGCTGCCAATGGAATACCCACTGCGGAGTGTGGAGGTAACATG
CACTCACCGGATGGGTGTACCTGAGAACAAGTGGAGACGATGGGTGCTGC
AGATTGTGACTCTCCTGTCCATGCAGGATGGCTCTGTGCTTAATGCTGTG
CTGCTATGGAAGAAAAATGTTGACAAGGAGTTTGAGGGTATTGAACCGTG
TGTGATTTGCTATGGAATACTGCATCCTCGCCACATGGCACTGCCCCATA
TGGTGTGCAAGACCTGCAAGAACTGTTTCCATTCAACATGCCTCTACAGG
TGGTTTCACACCAGCCACAAGAACAAGTGCCCGATCTGCCAGCAGCCATG
GGCATGA
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