mRNA_C-tenellus_contig947.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig947.2.1
Unique NamemRNA_C-tenellus_contig947.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig947.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig947contigC-tenellus_contig947:2418..3325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size172
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size120
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790178.1810145-UTR-C-tenellus_contig947:2417..24691680790178.1810145-UTR-C-tenellus_contig947:2417..2469Choristocarpus tenellus KU2346UTRC-tenellus_contig947 2418..2469 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790178.195032-CDS-C-tenellus_contig947:2469..25011680790178.195032-CDS-C-tenellus_contig947:2469..2501Choristocarpus tenellus KU2346CDSC-tenellus_contig947 2470..2501 -
1680790178.2089915-CDS-C-tenellus_contig947:2740..27971680790178.2089915-CDS-C-tenellus_contig947:2740..2797Choristocarpus tenellus KU2346CDSC-tenellus_contig947 2741..2797 -
1680790178.2218707-CDS-C-tenellus_contig947:3294..33251680790178.2218707-CDS-C-tenellus_contig947:3294..3325Choristocarpus tenellus KU2346CDSC-tenellus_contig947 3295..3325 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig947.2.1prot_C-tenellus_contig947.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig947 2470..3325 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig947.2.1

>prot_C-tenellus_contig947.2.1 ID=prot_C-tenellus_contig947.2.1|Name=mRNA_C-tenellus_contig947.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=40bp
MGEEAVPSCAGDSFHCCGGLQDCWWGGDTYLPQHGEQLG*
back to top

mRNA from alignment at C-tenellus_contig947:2418..3325-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig947.2.1 ID=mRNA_C-tenellus_contig947.2.1|Name=mRNA_C-tenellus_contig947.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=908bp|location=Sequence derived from alignment at C-tenellus_contig947:2418..3325- (Choristocarpus tenellus KU2346)
ATGGGTGAAGAAGCTGTACCCAGTTGTGCAGGTAAACACTTTTGACCTCT
GTTGTAGATACTTTTTCCAAATTGACACCCTAACCCTAACCCCAACCCAT
TGGCTATCTTAGGTGTTGTGTTTTCCCTCGCTTCATTGTCTGCATATAGT
AGTAAATTGTTGTAGCCTCCTGTGTAACTGTTAAGGCTTTATGGTTGGTA
CGTAATCTACGCGAAGGTATGGTGTAGTGGGATGTCCTATTTTTGGGGTG
TGCATCACCTTGTACTCTAATCCTGTATAAAACCAGTGTCTTCTGGGTGG
CAATTGAGCTGGATATGGTAAGTTTTTTGCGATTAGTAGCCGATGGTTGA
TCTTCTCACTACGAATGCTAGGTTGAAATTTGCATGAGGTCACTTAGAAT
TATTTTGTAGAAGTATGTTGGGAACTTGCAACTTTCCTAGGTACCAGCCT
TTCTAGGTTAGGTTGATCTCAGTAATCGACATTTCTTCAACACCGTGTCT
TGAATAATTTACAATTTTTCTCACCCAGGTGACAGCTTTCATTGTTGCGG
CGGCTTGCAAGACTGTTGGTGGGGTGGAGATACCTGTGAGTGATTTAGTT
AACAAGTTCAAGGAGGAACTTGCTGAGGAGATCTCGGATATCTCATCTCG
ATATTCATAATAGTTATGGTCAACAACACCAATTTGAATTTCATCATCCT
GTAATCCATTTTCCTTAAGCAAGTTTATTATTATTTCTTGCTGATCTTCA
AGCTCTTTATAAAGTTGTGCAATCTGATTTCTATCAGCAGTCGCTACATT
AAATTTTATTGTCCAATTTGCAAGATCTACCTCAACACGGCGAACAGCTA
GGGTAGTGACTGATGAAGTTCTTCAAGGAATGATGGGCGGTGAGGGGGAC
CTGTAAGC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig947:2418..3325-

>mRNA_C-tenellus_contig947.2.1 ID=mRNA_C-tenellus_contig947.2.1|Name=mRNA_C-tenellus_contig947.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=120bp|location=Sequence derived from alignment at C-tenellus_contig947:2418..3325- (Choristocarpus tenellus KU2346)
ATGGGTGAAGAAGCTGTACCCAGTTGTGCAGGTGACAGCTTTCATTGTTG
CGGCGGCTTGCAAGACTGTTGGTGGGGTGGAGATACCTATCTACCTCAAC
ACGGCGAACAGCTAGGGTAG
back to top