mRNA_C-tenellus_contig9459.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9459.1.1
Unique NamemRNA_C-tenellus_contig9459.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.080e-16
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 KGLLPDVTIAEVQATSHLAL-SSTSNGVAAAAAEMQKRTHYEGPS----DPRSYNLNTFGVECFGRLGKQAECFLDELATHKVGGKRAG 255
            KG+L DVT A+ QA  HL   S+TS+G+AA A+E +KR HY  P     D RS+ L T  VE FGRLG++   F+DELATH VGG+  G
Sbjct:  163 KGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGNVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGG 251
[Close]
BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.210e-16
Identity = 46/89 (51.69%), Postives = 58/89 (65.17%), Query Frame = 1 
Query:    4 KGLLPDVTIAEVQATSHLAL-SSTSNGVAAAAAEMQKRTHYEGPS----DPRSYNLNTFGVECFGRLGKQAECFLDELATHKVGGKRAG 255
            KG+L DVT A+ QA  HL   S+TS+G+AA A+E +KR HY  P     D R + L T  VE FGRLG++   F+DELATH VGG+  G
Sbjct:   51 KGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERRFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGG 139
[Close]
BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 2.560e-16
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 KGLLPDVTIAEVQATSHLAL-SSTSNGVAAAAAEMQKRTHYEGPS----DPRSYNLNTFGVECFGRLGKQAECFLDELATHKVGGKRAG 255
            KG+L DVT A+ QA  HL   S+TS+G+AA A+E +KR HY  P     D RS+ L T  VE FGRLG++   F+DELATH VGG+  G
Sbjct:  186 KGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGG 274
[Close]
BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.090e-16
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 KGLLPDVTIAEVQATSHLAL-SSTSNGVAAAAAEMQKRTHYEGPS----DPRSYNLNTFGVECFGRLGKQAECFLDELATHKVGGKRAG 255
            KG+L DVT A+ QA  HL   S+TS+G+AA A+E +KR HY  P     D RS+ L T  VE FGRLG++   F+DELATH VGG+  G
Sbjct:  172 KGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGG 260
[Close]
BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.600e-16
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 KGLLPDVTIAEVQATSHLAL-SSTSNGVAAAAAEMQKRTHYEGPS----DPRSYNLNTFGVECFGRLGKQAECFLDELATHKVGGKRAG 255
            KG+L DVT A+ QA  HL   S+TS+G+AA A+E +KR HY  P     D RS+ L T  VE FGRLG++   F+DELATH VGG+  G
Sbjct:  240 KGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGG 328
[Close]
BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 3.870e-16
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 KGLLPDVTIAEVQATSHLAL-SSTSNGVAAAAAEMQKRTHYEGPS----DPRSYNLNTFGVECFGRLGKQAECFLDELATHKVGGKRAG 255
            KG+L DVT A+ QA  HL   S+TS+G+AA A+E +KR HY  P     D RS+ L T  VE FGRLG++   F+DELATH VGG+  G
Sbjct:  163 KGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGG 251
[Close]
BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Match: A0A6H5JS53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS53_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.290e-16
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 KGLLPDVTIAEVQATSHLAL-SSTSNGVAAAAAEMQKRTHYEGPS----DPRSYNLNTFGVECFGRLGKQAECFLDELATHKVGGKRAG 255
            KG+L DVT A+ QA  HL   S+TS+G+AA A+E +KR HY  P     D RS+ L T  VE FGRLG++   F+DELATH VGG+  G
Sbjct:  292 KGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGG 380
[Close]
BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.560e-16
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 KGLLPDVTIAEVQATSHLAL-SSTSNGVAAAAAEMQKRTHYEGPS----DPRSYNLNTFGVECFGRLGKQAECFLDELATHKVGGKRAG 255
            KG+L DVT A+ QA  HL   S+TS+G+AA A+E +KR HY  P     D RS+ L T  VE FGRLG++   F+DELATH VGG+  G
Sbjct:  329 KGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGG 417
[Close]
BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 6.310e-16
Identity = 47/89 (52.81%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    4 KGLLPDVTIAEVQATSHLAL-SSTSNGVAAAAAEMQKRTHYEGPS----DPRSYNLNTFGVECFGRLGKQAECFLDELATHKVGGKRAG 255
            KG+L DVT A+ QA  HL   S+TS+G+AA A+E +KR HY  P     D RS+ L T  VE FGRLG++   F+DELATH VGG+  G
Sbjct:  338 KGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYACPGHVSFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGG 426
[Close]
BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Match: A0A6H5JL29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL29_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.150e-15
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 1 
Query:    4 KGLLPDVTIAEVQATSHLAL-SSTSNGVAAAAAEMQKRTHYEGPS----DPRSYNLNTFGVECFGRLGKQAECFLDELATHKVGGKRAG 255
            KG+L DVT A+ QA  HL   S+TS+G  A A+E +KR HY  P     D  S+ L T  VE FGRLG++   F+DELATH VGG+  G
Sbjct:   14 KGILLDVTHADPQAQVHLRNGSATSDGTVAQASEARKRQHYARPGHVSFDEHSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGG 102
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9459.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JPW7_9PHAE2.080e-1652.81Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAD2_9PHAE2.210e-1651.69Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K198_9PHAE2.560e-1652.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN7_9PHAE3.090e-1652.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDZ4_9PHAE3.600e-1652.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEX1_9PHAE3.870e-1652.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JS53_9PHAE4.290e-1652.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LLI3_9PHAE4.560e-1652.81Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ53_9PHAE6.310e-1652.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL29_9PHAE1.150e-1550.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9459contigC-tenellus_contig9459:191..451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons1
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790177.6187258-CDS-C-tenellus_contig9459:190..4511680790177.6187258-CDS-C-tenellus_contig9459:190..451Choristocarpus tenellus KU2346CDSC-tenellus_contig9459 191..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9459.1.1prot_C-tenellus_contig9459.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9459 191..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9459.1.1

>prot_C-tenellus_contig9459.1.1 ID=prot_C-tenellus_contig9459.1.1|Name=mRNA_C-tenellus_contig9459.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=87bp
GKGLLPDVTIAEVQATSHLALSSTSNGVAAAAAEMQKRTHYEGPSDPRSY
NLNTFGVECFGRLGKQAECFLDELATHKVGGKRAGGY
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mRNA from alignment at C-tenellus_contig9459:191..451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9459.1.1 ID=mRNA_C-tenellus_contig9459.1.1|Name=mRNA_C-tenellus_contig9459.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=261bp|location=Sequence derived from alignment at C-tenellus_contig9459:191..451+ (Choristocarpus tenellus KU2346)
GGCAAAGGCCTTCTGCCAGATGTGACAATTGCAGAAGTGCAGGCCACCTC
CCATCTTGCACTCTCATCCACCAGCAATGGTGTAGCTGCTGCTGCAGCCG
AGATGCAAAAGCGCACCCACTATGAGGGCCCTTCTGATCCTCGTAGTTAT
AACCTCAACACCTTCGGGGTGGAATGTTTTGGGCGCCTTGGCAAGCAAGC
GGAATGCTTCCTGGATGAGCTGGCTACACACAAGGTTGGGGGGAAAAGAG
CTGGTGGATAT
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Coding sequence (CDS) from alignment at C-tenellus_contig9459:191..451+

>mRNA_C-tenellus_contig9459.1.1 ID=mRNA_C-tenellus_contig9459.1.1|Name=mRNA_C-tenellus_contig9459.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=261bp|location=Sequence derived from alignment at C-tenellus_contig9459:191..451+ (Choristocarpus tenellus KU2346)
GGCAAAGGCCTTCTGCCAGATGTGACAATTGCAGAAGTGCAGGCCACCTC
CCATCTTGCACTCTCATCCACCAGCAATGGTGTAGCTGCTGCTGCAGCCG
AGATGCAAAAGCGCACCCACTATGAGGGCCCTTCTGATCCTCGTAGTTAT
AACCTCAACACCTTCGGGGTGGAATGTTTTGGGCGCCTTGGCAAGCAAGC
GGAATGCTTCCTGGATGAGCTGGCTACACACAAGGTTGGGGGGAAAAGAG
CTGGTGGATAT
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