mRNA_C-tenellus_contig9452.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9452.2.1
Unique NamemRNA_C-tenellus_contig9452.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9452.2.1 vs. uniprot
Match: D8LS14_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS14_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.100e-18
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:  136 EDERDELPFDVY-VTPPRRKVGRVKLPPLTGCGDTISVQGNVHKIVKVSNHYKWQAGRFVVKRKTVDTKSVSRLEKEDMLRRLVYGSDEAGGV*PFPA 426
            +D RD LPF VY   PP RKVG   LPPLTG GDT+      +K+++VS+HYK++ GRFVV+RK++  K + R+ KE ++ RLVYG  ++G   P P+
Sbjct:   79 DDGRDSLPFVVYDAAPPPRKVGVANLPPLTGTGDTLWHGSKHYKVLRVSSHYKYEGGRFVVRRKSIQAKELKRVAKERVVSRLVYG--DSGKAPPPPS 174
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BLAST of mRNA_C-tenellus_contig9452.2.1 vs. uniprot
Match: M1VF65_CYAM1 (Uncharacterized protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VF65_CYAM1)

HSP 1 Score: 60.1 bits (144), Expect = 4.960e-7
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:  139 DERDELPFDVYVT-PPRRKVGRVKLPPLTGCGDTISVQGNVHKIVKVSNHYKWQAGRFVVKRKTVDTKSVSRLEKEDMLRRL 381
            D RD+LPFDVYVT PP   +G+ KL P    GD +  Q + + I +   HY ++ G F V RK+VD  +V+R      L R+
Sbjct:   84 DNRDKLPFDVYVTTPPPYYLGQFKLDPRVHNGDILEFQNHAYVIKRTRLHYYYRNGEFRVGRKSVDVNTVARSHINSFLDRI 165
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9452.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS14_ECTSI3.100e-1848.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
M1VF65_CYAM14.960e-741.46Uncharacterized protein n=1 Tax=Cyanidioschyzon me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9452contigC-tenellus_contig9452:2707..4264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LS14
Model size1336
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.67e-21
EggNOG OGs2E6BW@1|root,2SD28@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_001750.1
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790177.3808346-UTR-C-tenellus_contig9452:2706..27211680790177.3808346-UTR-C-tenellus_contig9452:2706..2721Choristocarpus tenellus KU2346UTRC-tenellus_contig9452 2707..2721 +
1680790177.4164622-UTR-C-tenellus_contig9452:3342..42641680790177.4164622-UTR-C-tenellus_contig9452:3342..4264Choristocarpus tenellus KU2346UTRC-tenellus_contig9452 3343..4264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790177.394714-CDS-C-tenellus_contig9452:2721..29961680790177.394714-CDS-C-tenellus_contig9452:2721..2996Choristocarpus tenellus KU2346CDSC-tenellus_contig9452 2722..2996 +
1680790177.4071288-CDS-C-tenellus_contig9452:3218..33421680790177.4071288-CDS-C-tenellus_contig9452:3218..3342Choristocarpus tenellus KU2346CDSC-tenellus_contig9452 3219..3342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9452.2.1prot_C-tenellus_contig9452.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9452 2722..3342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9452.2.1

>prot_C-tenellus_contig9452.2.1 ID=prot_C-tenellus_contig9452.2.1|Name=mRNA_C-tenellus_contig9452.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=133bp
MPTVNVRTMNMLPIFSHEREHSGRHSIALQVHGIISCSQYEDERDELPFD
VYVTPPRRKVGRVKLPPLTGCGDTISVQGNVHKIVKVSNHYKWQAGRFVV
KRKTVDTKSVSRLEKEDMLRRLVYGSDEAGGV*
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mRNA from alignment at C-tenellus_contig9452:2707..4264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9452.2.1 ID=mRNA_C-tenellus_contig9452.2.1|Name=mRNA_C-tenellus_contig9452.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1558bp|location=Sequence derived from alignment at C-tenellus_contig9452:2707..4264+ (Choristocarpus tenellus KU2346)
GTTGTTCGCGCCTTGATGCCCACAGTGAATGTTCGTACCATGAACATGTT
GCCTATCTTCTCCCATGAAAGGGAGCACAGCGGTAGGCATTCAATAGCGT
TACAAGTACACGGAATTATTTCCTGTTCTCAATACGAGGATGAGCGCGAT
GAGCTCCCCTTTGACGTTTACGTGACGCCCCCACGACGAAAGGTCGGGAG
AGTAAAGCTGCCACCATTGACAGGCTGTGGTGACACCATCTCCGTCCAAG
GCAATGTCCACAAAATTGTTAAAGTCAGCAATCACTACAAGTGAGAACCC
GCGAAAAGTGTTTAATTAGTACTATTGTGAAGATCTGCATCATAGCATCG
GTACTGCTTGCCAGTTCCTACTTTGACATTACTTCTATTTGCCCCTCTAG
GATCCCAGACTGTGGTTCGATTGACAGCGATAGGCTGTGATTCCATCCGT
ACTACTCCACTTACTTCTCGGCACTTCAAATGTCTAACGATACGATGCTC
GCCGTTAAACAGGTGGCAGGCGGGTCGTTTCGTAGTGAAGAGGAAGACGG
TTGATACAAAATCAGTCTCTCGCTTGGAAAAGGAGGACATGCTGAGACGA
CTGGTTTACGGTTCAGATGAGGCTGGTGGTGTATGACCTTTCCCAGCCTG
ATTTCGCCATATCATCTTTCTCTGAGGATCGCTCTACGAAGCAATTTCCC
CGTATGTTATGGACGGGTACCTTGCCCCAGGAATATCGTCAGACATAATT
TTACCTCTATTGACAAAAGTCGGTGTTAGATCTCCAGTAGCCTTGGAGCA
CTCTTTGCAATGGGCATAATGGCATTGCTTCAAGTGCCCAAACGTCTTAA
GTTCTGCTACACCTCAATAGATCACCCCTTCTCTCCTGTAAGGATGGGGT
AAGCACTTAGTGTGTAGGTTGACGACAAGGCCTAAGTGAGACATTGCTAG
AGTATGTTGGGAAGGGGTAGGTATATTTCAGGTACAACGCTGCTCGATAT
ATGCTGTGTTTAGAAAGTACAAAGTACTCTCTGTCCACCCTAGAATCTCA
AGGGAATTCTTTTGAAGGAAGAAAAACAAGTCCAGCTTTTGATGTTATAT
GTGTAGAGAATGGGTAGTTCAGTAGAGGGTAGTAATGCATGCTGGATGAT
GTGTTCATGATAGTGGATATGGGAAAAGCGTAAGAGATGTTGCAGTAGCA
GAAGCTTTGACTTGCTTCTTTGTGTACTTCGTATGAAACTCGTGTGTGTA
TCACACATTCATATATATAGATATGTATGTAACTTTGTCTATCATGCAAA
GATTTCTGATAGTAATAGGACTAATATTTTTTGTAAAAAGTGGCGCGTTT
ATACCAACGAACTCGCGTTTACTTGGATCCGACCAATGGGGTGCACTAAA
CCCTTCAACACCCCCTTCCACTCTCATTATTACCATTGCTGATCTTGATA
TCGCTCACCAGCATACCTACAGTTAGGTGTATTTTATAGCATAAGAGTTA
GTCAAGAGCTTACACAGTTATTCCTATGATGGTACTGACAGATAGTGCAG
GCAAAGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig9452:2707..4264+

>mRNA_C-tenellus_contig9452.2.1 ID=mRNA_C-tenellus_contig9452.2.1|Name=mRNA_C-tenellus_contig9452.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=399bp|location=Sequence derived from alignment at C-tenellus_contig9452:2707..4264+ (Choristocarpus tenellus KU2346)
ATGCCCACAGTGAATGTTCGTACCATGAACATGTTGCCTATCTTCTCCCA
TGAAAGGGAGCACAGCGGTAGGCATTCAATAGCGTTACAAGTACACGGAA
TTATTTCCTGTTCTCAATACGAGGATGAGCGCGATGAGCTCCCCTTTGAC
GTTTACGTGACGCCCCCACGACGAAAGGTCGGGAGAGTAAAGCTGCCACC
ATTGACAGGCTGTGGTGACACCATCTCCGTCCAAGGCAATGTCCACAAAA
TTGTTAAAGTCAGCAATCACTACAAGTGGCAGGCGGGTCGTTTCGTAGTG
AAGAGGAAGACGGTTGATACAAAATCAGTCTCTCGCTTGGAAAAGGAGGA
CATGCTGAGACGACTGGTTTACGGTTCAGATGAGGCTGGTGGTGTATGA
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