mRNA_C-tenellus_contig9445.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9445.1.1
Unique NamemRNA_C-tenellus_contig9445.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9445.1.1 vs. uniprot
Match: A0A6H5L0A8_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0A8_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 2.380e-39
Identity = 97/238 (40.76%), Postives = 131/238 (55.04%), Query Frame = 1 
Query:  187 IGRKDAGGATALNRPKQIQGVFEELQKKAVANYKSTP------------TVAAPVVNTEELEAKLETLLGESNYCPAKLPSEQKATLKEILDDLMESYPQSATPLDDNALEGQWSLVYSSKKNLFSGVMGKKRSLLFKVSQPLQDINAAKMLIVNSFRLRLRLTPLGSRVTQLGSY-KEAPRSSTTEGKRAFQAEFNRGRWMGLLPVFRKDKIEGEVTYLSKAWRICKSGDHVVAFRK 861
            +  + + G   L+RPK++QGVF+++QKKAV  YK++              VA      + LE KLE+LL ESN+ P KL  ++K+ L + +  + ESYP  A PL D AL GQWS+VYSS   L   V+    S  FK S   Q ++     ++N+ R RLRLTPL  RV + GSY K A R    E          +G    +LP  R  K+E EVTYLS  WRIC++G   +AFRK
Sbjct:  218 VAEEGSSGTVKLDRPKEVQGVFDDVQKKAVDFYKTSSGAMSKSQDAEGGAVAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVDAIKAMEESYPAGANPLADPALSGQWSVVYSSSSRLLGRVIKGLFSGFFKTSDRRQVVDTGASSVLNACRARLRLTPLALRVAKKGSYRKTAERKVLVE-----MPPTKKGLLRRVLPSLRAGKVEAEVTYLSDKWRICRAGGVTLAFRK 450
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BLAST of mRNA_C-tenellus_contig9445.1.1 vs. uniprot
Match: D8LNG8_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNG8_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.180e-16
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:  202 AGGATALNRPKQIQGVFEELQKKAVANYKSTPTV-----------AAPVVNTEE-LEAKLETLLGESNYCPAKLPSEQKATLKEILDDLMESYPQSATPLDDNALEGQWSLVYSS 510
            + G   L+RPK++QGVF+++QKKAV  YK++              AAP+    + LE KLE+LL ESN+ P KL  ++K+ L   +  + ESYP  A PL D AL GQWS+VYSS
Sbjct:  194 SSGTVKLDRPKEVQGVFDDIQKKAVEFYKTSSGAMSKSQDAEGGAAAPMSEAAKTLETKLESLLSESNFKPRKLKKDKKSQLVAAIKAMEESYPADANPLADPALSGQWSVVYSS 308
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9445.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0A8_9PHAE2.380e-3940.76PAP_fibrillin domain-containing protein n=1 Tax=Ec... [more]
D8LNG8_ECTSI1.180e-1645.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9445contigC-tenellus_contig9445:2..2805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1503
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003920.1
Cds size441
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790176.940872-UTR-C-tenellus_contig9445:1..1931680790176.940872-UTR-C-tenellus_contig9445:1..193Choristocarpus tenellus KU2346UTRC-tenellus_contig9445 2..193 +
1680790176.9598124-UTR-C-tenellus_contig9445:976..12161680790176.9598124-UTR-C-tenellus_contig9445:976..1216Choristocarpus tenellus KU2346UTRC-tenellus_contig9445 977..1216 +
1680790176.995427-UTR-C-tenellus_contig9445:2175..28051680790176.995427-UTR-C-tenellus_contig9445:2175..2805Choristocarpus tenellus KU2346UTRC-tenellus_contig9445 2176..2805 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790176.9742825-CDS-C-tenellus_contig9445:1216..13031680790176.9742825-CDS-C-tenellus_contig9445:1216..1303Choristocarpus tenellus KU2346CDSC-tenellus_contig9445 1217..1303 +
1680790176.9843059-CDS-C-tenellus_contig9445:1821..21751680790176.9843059-CDS-C-tenellus_contig9445:1821..2175Choristocarpus tenellus KU2346CDSC-tenellus_contig9445 1822..2175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9445.1.1prot_C-tenellus_contig9445.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9445 1217..2175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9445.1.1

>prot_C-tenellus_contig9445.1.1 ID=prot_C-tenellus_contig9445.1.1|Name=mRNA_C-tenellus_contig9445.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=147bp
MESYPQSATPLDDNALEGQWSLVYSSKKNLFSGVMGKKRSLLFKVSQPLQ
DINAAKMLIVNSFRLRLRLTPLGSRVTQLGSYKEAPRSSTTEGKRAFQAE
FNRGRWMGLLPVFRKDKIEGEVTYLSKAWRICKSGDHVVAFRKVEE*
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mRNA from alignment at C-tenellus_contig9445:2..2805+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9445.1.1 ID=mRNA_C-tenellus_contig9445.1.1|Name=mRNA_C-tenellus_contig9445.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2804bp|location=Sequence derived from alignment at C-tenellus_contig9445:2..2805+ (Choristocarpus tenellus KU2346)
CCCCTAATTTGCATAGAAACAACAGAAGTTGTGGAGAGCGTTGAGGAGCC
TGCTGCAGACCCGGTGCCACAAAAGACTGCAGTCAAGTCACCAACAGTAG
CAGCAGCTTCAGCAGCAGCAAAGGCCAAAGAGGCGATTGTCAATGCGCAG
GCCGTGGAAGCTAAGACCAAGACCAACGCCCGTCCAATAGGGGTAAGCTC
ATTGAGTGTTGTACCTTACCCATCCATTGTGATAAACCTGGTGCCAACTA
GCTAACACTAGTACTTAGCCTGTGCCTCCTTCACAGTGATGAATCAAATG
CAAAACTGCTCATGGAGTACTGGGAGATGGAGGATTGAGGTAGAGTGAGT
GTAAAATGATGTTGCTGTCATGGCGATGCTCTTGATGTGCAAGAGGCACC
ACCTAATGTAATAAAATTCATTGCTTCCTATTCCAGGAAGGCTTGCTACC
AATAGTGTCTCCTTTGATGTGGCTTTTGATGTGATAATGCCGCGAATCCG
CTTCCCTCCGTGATGGGGTAAGGTCATTTTGTTTTGAGGGGCCATACACT
GTATTTGTTATGAAGGGAAGTGCAAGCATCTGCGAAAGTGCCAGAGCACT
CATTTAGTCATGGTGCATTGGACAGTAGGGTTCAGTTGTGTGTCATTGAA
TGCATTGCTGTTGCGTTGATATAGGTCGCACTCCTGTTTTCTTGTTCGTC
TGTATTGATGTAAGGCCATGTCATTCAATACCTGTGCTTACAAGCCTAGG
GTAGAGTGAGAATTGCAAAGGAGTATATTCCCGCCCGGTAAGTTGGAACC
GAGAGTATTCCAATGATGGTGCCCATGCAAATGGGTGGTATCCATATTTG
CTGTGAAGGTTTTAATTTTTTGGTGTGTGAAGGAAAGTCTTGAGATCCCC
TCTAGAAAAAAACGCCCCTAACACTGTTGTTTAGCCGTAAGTAACAAACT
GAGTTGCCAATGTGCTCTTTTTCAGAGGAAGGATGCTGGGGGAGCAACAG
CCCTCAACCGCCCCAAGCAGATCCAGGGAGTGTTTGAAGAGCTTCAGAAG
AAGGCAGTTGCCAACTACAAGAGTACACCCACTGTGGCTGCACCTGTAGT
TAACACCGAAGAGCTGGAGGCAAAGCTTGAGACCCTCCTGGGTGAGAGCA
ACTACTGCCCTGCTAAGCTGCCTTCGGAGCAGAAGGCTACGCTAAAGGAG
ATCCTTGATGATCTGATGGAGTCCTACCCTCAGAGCGCAACACCGCTTGA
TGACAATGCCCTTGAGGGGCAATGGAGTTTGGTCTACTCTTCCAAGAAAA
ACGTAAGGCTTGCTAGGGAAGGCTTGATAAAGGTAGAGGGGGGAAAGGAG
TGAGAGTGGTTGTGCTGTGATACACAAGGTTGGCGATGATATGTTTTGAA
TGGGAATATGAACTATGGGTCTGCGGTGAGAAAAGTTAAGTTGGGGTGAC
TTCAAGCATTTTTACTTTCTAAGGGTCAGCCCTGTTCAAACAATTGAAGC
ACTACCAAACGCCTCCATGCGAAAGAGGAAATGGAGTTTGGGGGGAGGTG
GATGTGGGGGATGTCATGGATCCCCTCGGTAATTGAACTTCCAGTGTTTC
TTTGTCTCGAATTATTCCATTATTAGTCATCATCTTACGTAGAGTGCAGT
TTGCAGGAAATTTGTCAGGCGTTTATAGAGAAACCGCATCAACACTCTCG
TCCAAACTCTTCCATGTCTTCAGACATCATCACAAAGACCTTCGCGTGCA
CGTTCTTGAGCCCCGCTCCCTTCACCCACCTACCCACCCTAATCCTCGTG
TGTACAATTTTTGTCTGCAGCTGTTTTCGGGTGTGATGGGAAAGAAGCGT
TCGCTGCTGTTCAAGGTTTCCCAGCCCCTCCAGGACATCAATGCTGCAAA
GATGCTCATCGTTAACTCCTTCAGACTGCGCTTGCGACTGACACCCCTGG
GCTCTCGAGTGACCCAGCTTGGCTCGTACAAGGAAGCACCACGTTCTTCC
ACCACTGAGGGCAAGCGTGCATTTCAGGCAGAGTTCAACCGGGGACGCTG
GATGGGTTTGCTCCCGGTTTTCCGCAAAGACAAGATTGAGGGAGAAGTTA
CATACTTGTCAAAGGCCTGGCGGATCTGCAAGTCTGGGGACCATGTGGTC
GCTTTCCGGAAGGTTGAGGAATGAGTTGAACACATTGGGGGGGGGGAAGG
TGAGATAGGAGGGGGGGAGTGAAGTGCTCTCTGCCGACAAAAGGAGGTCA
ATGTGGTGGGGGGGAAAGCATTTTTGTGTGTTATGTGTGTGTGCTTGGGT
CTGAACATCCACGGAATGTGCTTCAGTATCTCTGCCTTGAAGTGGTGTGA
TGGCTTGGGATAATGAAGTGGTTTGGTGAGAAATGGAGTGGGGAGCGAGG
GGAGACAATGTGTGTGTGTTGTGGTGTTTCCACTAAGGTAAGGGCTTGGC
AGAACAAGGCCTCCTTTCAGGGTGTGATTCTGTTCACATGAACTCATTAA
GGATGAGCCAGTACAAGCAGGAGGGAGGAGTGAGCATAGGAGTTGAGAGA
TGAGAAGGGCAAGGCTTTCATCTTTTCCCCATGTACTATATCTTATGGTG
TCAATTTTCAAGTTGGATTTGGTAAGTTGGGAAGGGGGAGGGCGCAGGCA
GCTCTTGCTGCCCCTTTTACATCCTTCTCCCCCCAACTGCCCTCTCATCC
CAATTCTGGCTGTGTGTTTGACCCCCTGTACCACAACTTCACTAGGGTAC
CCATCATTAATTGATTGTTACCTTAACACTGAGGTAACATGACTTGTGTT
TTTT
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Coding sequence (CDS) from alignment at C-tenellus_contig9445:2..2805+

>mRNA_C-tenellus_contig9445.1.1 ID=mRNA_C-tenellus_contig9445.1.1|Name=mRNA_C-tenellus_contig9445.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=441bp|location=Sequence derived from alignment at C-tenellus_contig9445:2..2805+ (Choristocarpus tenellus KU2346)
ATGGAGTCCTACCCTCAGAGCGCAACACCGCTTGATGACAATGCCCTTGA
GGGGCAATGGAGTTTGGTCTACTCTTCCAAGAAAAACCTGTTTTCGGGTG
TGATGGGAAAGAAGCGTTCGCTGCTGTTCAAGGTTTCCCAGCCCCTCCAG
GACATCAATGCTGCAAAGATGCTCATCGTTAACTCCTTCAGACTGCGCTT
GCGACTGACACCCCTGGGCTCTCGAGTGACCCAGCTTGGCTCGTACAAGG
AAGCACCACGTTCTTCCACCACTGAGGGCAAGCGTGCATTTCAGGCAGAG
TTCAACCGGGGACGCTGGATGGGTTTGCTCCCGGTTTTCCGCAAAGACAA
GATTGAGGGAGAAGTTACATACTTGTCAAAGGCCTGGCGGATCTGCAAGT
CTGGGGACCATGTGGTCGCTTTCCGGAAGGTTGAGGAATGA
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