mRNA_C-tenellus_contig944.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig944.3.1
Unique NamemRNA_C-tenellus_contig944.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Match: UPI000900EE06 (uncharacterized protein LOC109134360 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000900EE06)

HSP 1 Score: 60.1 bits (144), Expect = 1.640e-9
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    4 LGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVYGEVLGFKGDSVFEIPHLSKEKTEMAGKL 234
            LGFFN+IQ LK+ +   + + LV+   +AF  Y  +   H+W +L  V  E L  KG++ + IPH+ K+  E  G+L
Sbjct:   28 LGFFNAIQTLKDQIAPRSVKQLVKAVNKAFDNYDPKLCNHIWLTLQQVMKETLIVKGNNNYHIPHMGKKSLERRGEL 104          
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Match: UPI0007F012D1 (uncharacterized protein LOC108203813 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F012D1)

HSP 1 Score: 61.6 bits (148), Expect = 2.850e-9
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    4 LGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVYGEVLGFKGDSVFEIPHLSKEKTEMAGKL 234
            LGFF SIQ L+ +   T  E+LV    ++F  YP E L  V+ +      E++ FKGD+ ++IPH+ K++ E  G L
Sbjct:  263 LGFFRSIQDLQHEKAPTTIEELVAAVKQSFDEYPVEKLNRVFLTQQTCMKEIMKFKGDNDYKIPHMGKDRLEREGTL 339          
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Match: UPI00053FDE92 (uncharacterized protein LOC104888825 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FDE92)

HSP 1 Score: 60.1 bits (144), Expect = 1.080e-8
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    4 LGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVYGEVLGFKGDSVFEIPHLSKEKTEMAGKL 234
            LGFFN+IQ LK+ +   + + LV+   +AF  Y  +   H+W +L  V  E L  KG++ + IPH+ K+  E  G+L
Sbjct:  468 LGFFNAIQTLKDQIAPRSVKQLVKAVNKAFDNYDPKLCNHIWLTLQQVMKETLIVKGNNNYHIPHMGKKSLERRGEL 544          
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Match: UPI00053FB287 (uncharacterized protein LOC104908611 n=4 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FB287)

HSP 1 Score: 59.3 bits (142), Expect = 1.590e-8
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    4 LGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVYGEVLGFKGDSVFEIPHLSKEKTEMAGKL 234
            LGFFN+IQ LK+ +   + + LV+   +AF  Y  +   H+W +L  V  E L  KG++ + IPH+ K+  E  G+L
Sbjct:  172 LGFFNAIQTLKDQLAPRSVKQLVKAVNKAFDNYDPKLCNHIWLTLQQVMKETLIVKGNNNYHIPHMGKKSLERRGEL 248          
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Match: UPI0020091A08 (uncharacterized protein LOC125206097 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020091A08)

HSP 1 Score: 58.5 bits (140), Expect = 3.690e-8
Identity = 29/80 (36.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:    4 LGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVYGEVLGFKGDSVFEIPHLSKEKTEMAGKLLPN 243
            LGFF +IQ L+      N ++LVE   +A+     +TL  V+ SL     ++L F+GD+ +++PH++K++ E  G L PN
Sbjct:  337 LGFFRAIQSLQHQKPCRNVDELVENVCKAYEELTPQTLNRVFLSLQACLTQILQFRGDNSYKVPHMNKDRLERTGGL-PN 415          
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Match: UPI00053F7B42 (uncharacterized protein LOC104898721 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F7B42)

HSP 1 Score: 56.6 bits (135), Expect = 1.130e-7
Identity = 27/77 (35.06%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    4 LGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVYGEVLGFKGDSVFEIPHLSKEKTEMAGKL 234
            LGFFN+IQ LK+ +   + + LV+   +A+  Y  +   H+W +L  V  E L  KG++ + IPH+ K+  +  G+L
Sbjct:  120 LGFFNAIQTLKDQLACRSVKHLVKAVNKAYDNYDPKLCNHIWLTLQQVIKETLIVKGNNNYHIPHMGKKSLKRRGEL 196          
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Match: UPI000901F817 (uncharacterized protein LOC109136021 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI000901F817)

HSP 1 Score: 56.2 bits (134), Expect = 1.980e-7
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 1
Query:    4 LGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVYGEVLGFKGDSVFEIPHLSKEKTEMAGKL 234
            LGFFN+IQ L++ +     + LV+   +A+  Y  +   H+W +L  V  E L  KG++ + IPH+ K+  E  G+L
Sbjct:  158 LGFFNAIQTLEDQIAPRTVKHLVKAMNKAYDKYDPKLCNHIWLTLQQVMKETLIVKGNNNYHIPHMGKKALERRGEL 234          
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Match: UPI001C25248E (uncharacterized protein LOC121754342 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C25248E)

HSP 1 Score: 54.7 bits (130), Expect = 6.020e-7
Identity = 25/72 (34.72%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    4 LGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVYGEVLGFKGDSVFEIPHLSKEKTE 219
            LGFF +IQ L+ +      ++LVE   +A+     +TL  V+ SL     ++L FKGD+ +++PH++K++ E
Sbjct:  130 LGFFRAIQSLQHEKPCRGVDELVENVCKAYEELTPQTLNRVFLSLQACLTQILKFKGDNHYKLPHMNKDRLE 201          
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Match: UPI00053F965D (uncharacterized protein LOC104886745 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F965D)

HSP 1 Score: 53.5 bits (127), Expect = 2.120e-6
Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    4 LGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVYGEVLGFKGDS-VFEIPHLSKEKTEMAGKL 234
            LGFFN+IQ LK+ +   + + LV+   +A+  Y  +   H+W +L  V  E L  KG++  + IPH+ K+  E  G+L
Sbjct:  277 LGFFNAIQILKDQLAPRSVKHLVKAVNKAYDNYDPKLCNHIWPTLQQVMKETLIVKGNNNYYHIPHMEKKSLERRGEL 354          
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Match: UPI001C2541F4 (uncharacterized protein LOC121800620 n=4 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2541F4)

HSP 1 Score: 49.3 bits (116), Expect = 6.700e-5
Identity = 22/72 (30.56%), Postives = 42/72 (58.33%), Query Frame = 1
Query:    4 LGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVYGEVLGFKGDSVFEIPHLSKEKTE 219
            LGFF +IQ L+ +    N + L+E    ++     +TL  V+ SL     E++ F+G++ +++PH++K + E
Sbjct:  336 LGFFRAIQTLQHEKPCNNVDTLLENVCSSYEELSPQTLNKVFLSLQACLTEIMVFRGENNYKVPHINKARLE 407          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig944.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI000900EE061.640e-937.66uncharacterized protein LOC109134360 n=1 Tax=Beta ... [more]
UPI0007F012D12.850e-938.96uncharacterized protein LOC108203813 n=1 Tax=Daucu... [more]
UPI00053FDE921.080e-837.66uncharacterized protein LOC104888825 n=1 Tax=Beta ... [more]
UPI00053FB2871.590e-837.66uncharacterized protein LOC104908611 n=4 Tax=Beta ... [more]
UPI0020091A083.690e-836.25uncharacterized protein LOC125206097 n=1 Tax=Salvi... [more]
UPI00053F7B421.130e-735.06uncharacterized protein LOC104898721 n=1 Tax=Beta ... [more]
UPI000901F8171.980e-735.06uncharacterized protein LOC109136021 n=1 Tax=Beta ... [more]
UPI001C25248E6.020e-734.72uncharacterized protein LOC121754342 n=1 Tax=Salvi... [more]
UPI00053F965D2.120e-635.90uncharacterized protein LOC104886745 n=1 Tax=Beta ... [more]
UPI001C2541F46.700e-530.56uncharacterized protein LOC121800620 n=4 Tax=Salvi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig944contigC-tenellus_contig944:2640..2882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog161934.XP_010672225.1
PFAMsHTH_Tnp_Tc3_2
Model size243
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.76e-09
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,37TMG@33090|Viridiplantae,3GG9M@35493|Streptophyta
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790176.7248461-CDS-C-tenellus_contig944:2639..28821680790176.7248461-CDS-C-tenellus_contig944:2639..2882Choristocarpus tenellus KU2346CDSC-tenellus_contig944 2640..2882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig944.3.1prot_C-tenellus_contig944.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig944 2640..2882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig944.3.1

>prot_C-tenellus_contig944.3.1 ID=prot_C-tenellus_contig944.3.1|Name=mRNA_C-tenellus_contig944.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=81bp
NLGFFNSIQQLKEDVGVTNTEDLVETTMEAFSVYPQETLEHVWQSLFVVY
GEVLGFKGDSVFEIPHLSKEKTEMAGKLLPN
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mRNA from alignment at C-tenellus_contig944:2640..2882+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig944.3.1 ID=mRNA_C-tenellus_contig944.3.1|Name=mRNA_C-tenellus_contig944.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=243bp|location=Sequence derived from alignment at C-tenellus_contig944:2640..2882+ (Choristocarpus tenellus KU2346)
AACCTGGGATTCTTTAATTCCATCCAGCAACTGAAGGAAGATGTTGGGGT GACCAACACAGAGGACCTGGTGGAGACTACAATGGAGGCGTTCAGTGTGT ACCCCCAGGAGACACTAGAGCACGTCTGGCAGAGCCTCTTCGTAGTCTAC GGTGAAGTGCTGGGATTCAAGGGGGACAGCGTCTTCGAAATTCCCCATCT TAGCAAGGAAAAGACTGAGATGGCGGGCAAGCTCCTGCCGAAT
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Coding sequence (CDS) from alignment at C-tenellus_contig944:2640..2882+

>mRNA_C-tenellus_contig944.3.1 ID=mRNA_C-tenellus_contig944.3.1|Name=mRNA_C-tenellus_contig944.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=243bp|location=Sequence derived from alignment at C-tenellus_contig944:2640..2882+ (Choristocarpus tenellus KU2346)
AACCTGGGATTCTTTAATTCCATCCAGCAACTGAAGGAAGATGTTGGGGT
GACCAACACAGAGGACCTGGTGGAGACTACAATGGAGGCGTTCAGTGTGT
ACCCCCAGGAGACACTAGAGCACGTCTGGCAGAGCCTCTTCGTAGTCTAC
GGTGAAGTGCTGGGATTCAAGGGGGACAGCGTCTTCGAAATTCCCCATCT
TAGCAAGGAAAAGACTGAGATGGCGGGCAAGCTCCTGCCGAAT
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