mRNA_C-tenellus_contig9426.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9426.1.1
Unique NamemRNA_C-tenellus_contig9426.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A6H5JEL1_9PHAE (VDE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL1_9PHAE)

HSP 1 Score: 490 bits (1262), Expect = 1.750e-169
Identity = 243/318 (76.42%), Postives = 264/318 (83.02%), Query Frame = 1
Query:   10 GEGEGGAVEVLKRAGVGLLAGLLFSSGIAGPGLAALADTGLAGPTSSVTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGE--DGG----------QVADIKVNFRLAKPDSNDFWENTINEKLEVDPVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVAR 927
            G+  G  ++ +KR GVG LAGL   +G  G   AA  D G+  PTSSVTV+ LQ+YDGFEDYAAQGQQME+SDVGCFANECK ETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGS KLDSWLTCTLEDHSCVKIPKDMDFS IDKDPP IV+GF+AK LQGTWYK+MGVNKKYDCFDCQ+NTF+VA  V      GG          QVADIKVNFRLAKPDS+DFWENTI E L+VDP  S RTFHT+GKLFGL+FKENWYVTG S DPG EFVFVQY+GHTLQGSYDGGFVYA+KP LPK AL+KVAKVAR
Sbjct:  134 GDAWGKVMDGIKRVGVGTLAGLFLMAG--GDVGAAFGDVGVVEPTSSVTVQDLQRYDGFEDYAAQGQQMENSDVGCFANECKRETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSNKLDSWLTCTLEDHSCVKIPKDMDFSAIDKDPPHIVKGFEAKQLQGTWYKIMGVNKKYDCFDCQKNTFNVAQAVDAPVPSGGDVTAATATPRQVADIKVNFRLAKPDSDDFWENTITETLQVDPADSPRTFHTDGKLFGLSFKENWYVTGHSTDPGEEFVFVQYRGHTLQGSYDGGFVYARKPYLPKSALAKVAKVAR 449          
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: D7FSQ0_ECTSI (VDE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ0_ECTSI)

HSP 1 Score: 475 bits (1222), Expect = 1.040e-165
Identity = 229/285 (80.35%), Postives = 247/285 (86.67%), Query Frame = 1
Query:  109 AALADTGLAGPTSSVTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGV------GGEDGG------QVADIKVNFRLAKPDSNDFWENTINEKLEVDPVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVAR 927
            AA  D G+  PTSSVTV+ LQ+YDGFEDYAAQGQQME+SDVGCFANECK ETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGS KLDSWLTCTLEDHSCVKIPKDMDFS IDKDPP IV+GF+AK LQGTWYK+MGVNKKYDCFDCQ+NTF+VA  V      GG+         QVADIKVNFRLAKPDS+DFWENTI E L+VDP  S RTFHT+GKLFGL+FKENWYVTG S DPG EFVFVQY+GHTLQGSYDGGFVYA+KP LPK AL+KVA+VAR
Sbjct:    8 AAFGDVGVVEPTSSVTVQDLQRYDGFEDYAAQGQQMENSDVGCFANECKRETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSNKLDSWLTCTLEDHSCVKIPKDMDFSAIDKDPPHIVKGFEAKQLQGTWYKIMGVNKKYDCFDCQKNTFNVAQAVDAPVPAGGDVTAATATPRQVADIKVNFRLAKPDSDDFWENTITETLQVDPADSPRTFHTDGKLFGLSFKENWYVTGHSTDPGEEFVFVQYRGHTLQGSYDGGFVYARKPYLPKSALAKVARVAR 292          
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A835YUF5_9STRA (Violaxanthin de-epoxidase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF5_9STRA)

HSP 1 Score: 352 bits (904), Expect = 4.880e-118
Identity = 167/277 (60.29%), Postives = 201/277 (72.56%), Query Frame = 1
Query:  175 YDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDS------------------------WLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVDPVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVAR 927
            YDGF DYAA+G++M++SDVGCFANEC  +T  CFTDGSCLKGVTCLGRCKGEQ CATRCFA+YG  KLD+                        WL+CTLEDH CVKIPKD+DFS IDKDPP I + FD   L+GTWYKV+GVN KYD FDCQRNTF++     GE G   A + V FRLAKP++    FW+N ++E+LE+DP G+ RTFHT GK+FGLTF+ENWYV     +PG EFV V+Y+GHTLQG+YDGGFVYA++P LP+ A + V   AR
Sbjct:   21 YDGFADYAAKGKKMDESDVGCFANECGKQTRDCFTDGSCLKGVTCLGRCKGEQ-CATRCFARYGGPKLDAQHHDQELEXXXXXXXXXXXXXXXAWLSCTLEDHECVKIPKDLDFSAIDKDPPAIAKSFDPTFLEGTWYKVLGVNPKYDLFDCQRNTFAITAANAGESGS--AQVAVEFRLAKPEAAGGGFWQNRLSERLEIDPPGAPRTFHTEGKMFGLTFRENWYVAAAGAEPGAEFVLVRYRGHTLQGTYDGGFVYAREPALPQRAAAAVRDAAR 294          
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A6U3VDS0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VDS0_9STRA)

HSP 1 Score: 266 bits (679), Expect = 4.250e-83
Identity = 131/263 (49.81%), Postives = 174/263 (66.16%), Query Frame = 1
Query:  172 KYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVD--------PVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPG--MEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924
            KYDGF +YA + Q ME SDVGCF N+C  +T + F++   +KGV+CLGRCKGEQ CATRCFAQ+GSE LD+WL+CT+E++ CVK+PK++D S  +K     ++ FD K+L G WYK  G+N  YD FDCQ NTF  A    G++     D+ + FR+ +PD     FWEN++ E + VD        P+G  RT HT GK++GL F ENWY+ G S+  G    F  V YKGHTLQG+Y+G FVYAK+  LP+ A+  V + A
Sbjct:  103 KYDGFAEYAKENQ-MEKSDVGCFMNKCGDQTKALFSNPRGIKGVSCLGRCKGEQTCATRCFAQFGSEDLDNWLSCTIEENECVKVPKNVDNSEENKGYSTAIKNFDPKSLIGNWYKTDGLNPNYDLFDCQSNTFEFASTAPGKEANDELDMGIFFRVVRPDEAGGGFWENSLTEHMVVDAANPEVPNPLG--RTMHTEGKMYGLKFNENWYIIGESDGKGDIPAFKLVAYKGHTLQGNYEGSFVYAKERILPEAAVPAVREAA 362          
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A7S4C1V0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1V0_CHRCT)

HSP 1 Score: 260 bits (665), Expect = 2.010e-81
Identity = 140/326 (42.94%), Postives = 193/326 (59.20%), Query Frame = 1
Query:   28 AVEVLKRAGVGLLAGLLFSSGIAGPGLAALADTGLAGPTSSVTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANE--CKHETASCFT---------DGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQ-----------GTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVDPVGSC--RTFHTNGKLFGLTFKENWYVTGLSE--DPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKV 921
            A   +K A   +L+  L SS +  P LAA                 ++ YDGF +YAA G +ME++DV C   E  C+ +T +CF+         D SCLKGV CLGRCKGEQ+CAT+CFAQYGS  LD+WL+C +ED  CVK+P+D+D+S I+K+PP ++R F A+ L            G+WYKV+G+N KYD +DCQ NTF        +       I + FR+ +P++     W N   E+L +D  G+   R+FHT GK+FGLTF ENWY+ G  +  D    F    YKGHTLQG+Y+G FV+AK+P+ P+ +   +AKV
Sbjct:   36 AANFMKAAYAAVLSTALLSSTLQAPALAA----------------DIRTYDGFAEYAADGNKMEETDVNCLIGETQCRAQTFACFSGQEQLGGTGDLSCLKGVVCLGRCKGEQKCATQCFAQYGSSTLDNWLSCAIEDQKCVKVPQDLDYSQINKNPPPVMRNFKAEQLAAGPAAVEDREAGSWYKVLGLNPKYDLYDCQVNTFRKTSASSMQ-------IDIEFRVPRPNAPPTAAWPNRFVEQLSIDDEGNALGRSFHTEGKMFGLTFNENWYILGGRDAADGVDPFWVAAYKGHTLQGNYEGAFVFAKQPSFPESSREALAKV 338          
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A7S4HQQ2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQQ2_9STRA)

HSP 1 Score: 258 bits (659), Expect = 3.720e-80
Identity = 131/263 (49.81%), Postives = 175/263 (66.54%), Query Frame = 1
Query:  172 KYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVD--------PVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPG--MEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924
            KYDGF +YA + + ME SDV CF N+C  +T + FT+   +KGV+CLGRCKGEQ CATRCFA++GSE L+SWL+CT+ED+ CVKIPK++D S         V+ F+ K+L GTWYK  G+N  YD FDCQ NTF+++   G EDG ++ D+ +  R+++P      +W+N + E + VD        P  S RT HT GK++GL+F ENWY+ G S+  G    F  V YKGHTLQG+Y+G FVYAK+P LP+ A   V  VA
Sbjct:   99 KYDGFAEYAKENK-MEKSDVSCFMNKCGDQTKALFTNPRGIKGVSCLGRCKGEQSCATRCFAEFGSEDLNSWLSCTIEDNECVKIPKNIDNSAEMMGYDSTVKNFNPKSLVGTWYKTDGLNPNYDLFDCQSNTFTLSP--GAEDGSEL-DMGIFLRVSRPAELGGGYWDNDLTEHMVVDAAPSNAGLPNPSKRTMHTEGKMYGLSFYENWYILGESDGKGDVPPFKLVAYKGHTLQGNYEGAFVYAKEPKLPEAAKQAVRDVA 357          
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A7S2HCA8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HCA8_9STRA)

HSP 1 Score: 255 bits (652), Expect = 4.060e-79
Identity = 132/281 (46.98%), Postives = 174/281 (61.92%), Query Frame = 1
Query:  115 LADTGLAGPTSSVTV-EQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDSND--FWENTINEKLEVD------PVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPG--MEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924
            LA T    P  + T      KYDGF +YA + Q ME SDV CF  +C  +T + F++   +KGV+CLGRCKGEQ CATRCFAQ+GSE LD+WL+CT+E++ CVK+PK++D S  +K    +V+ FD  +L GTW+K  G+N  YD FDCQ NTF  A      D     D+ + FR+ +P  +   +WEN + E + VD      P  S RT HT GK++GL F ENWY+ G S+  G    F  V YKGHTLQG+Y+G FVYAK+  LP+ A+  V   A
Sbjct:   79 LASTSFLSPAIAETAASSTAKYDGFAEYAKENQ-MEKSDVNCFITKCGDQTKALFSNPRGIKGVSCLGRCKGEQACATRCFAQFGSEDLDNWLSCTIEENECVKVPKNVDNSEENKGYTTVVKNFDPSSLIGTWFKTDGLNPNYDLFDCQSNTFEFASSANKND---ELDMGIFFRVIRPSESGGGYWENALTEHMVVDAANADVPNPSGRTMHTEGKMYGLKFNENWYIIGESDGKGDVPPFKLVAYKGHTLQGNYEGAFVYAKERILPEAAVPAVKDAA 355          
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: B8C0W7_THAPS (Violaxanthin de-epoxidase-like 1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0W7_THAPS)

HSP 1 Score: 253 bits (647), Expect = 2.630e-78
Identity = 129/270 (47.78%), Postives = 169/270 (62.59%), Query Frame = 1
Query:  145 SSVTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVDPVG------SCRTFHTNGKLFGLTFKENWYVTGLSEDPG--MEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924
            +S      QKYDGF +YA + + ME SDVGCF N+C  +T   F++   +KGV+CLGRCKGEQ CATRCFA++GSE LD+WL+CT+ED+ CVK+PK++D S  +      V+ FD  TL G WYK  G+N  YD FDCQ NTF  +D    E      D+ + FR+ +P+     FWEN++ E + VD V       + RT HT GK++GL F ENWY+ G S        F  V YKGHTLQG+Y+  FVYAK+  LPK A+  V + A
Sbjct:   98 ASTPASTTQKYDGFAEYAKENK-MEQSDVGCFINKCGDQTKQLFSNPRGIKGVSCLGRCKGEQSCATRCFAEFGSEDLDNWLSCTIEDYECVKVPKNIDNSAENVGYDTTVKKFDPSTLVGKWYKTDGLNPNYDLFDCQSNTFDFSDDTKKE-----LDMGIFFRVPRPEEYGGGFWENSLTEHMIVDAVSPELDNPTGRTMHTAGKMYGLKFTENWYILGESNGDNDIPPFKLVAYKGHTLQGNYEEAFVYAKESVLPKEAVGAVREAA 361          
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A7S2NZ74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZ74_9STRA)

HSP 1 Score: 249 bits (636), Expect = 2.850e-78
Identity = 122/251 (48.61%), Postives = 160/251 (63.75%), Query Frame = 1
Query:  199 AQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDSND--FWENTINEKLEVDPVGSC-----RTFHTNGKLFGLTFKENWYVTGLSEDPG--MEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924
            A+  QME SDV CF  +C  +T + F++   +KGVTCLGRCKGEQ CATRCFA+YGSE L+ WL+CT+E+H CVK+PK++D S  D   P  +  FD  +L G WYK  G+N  YD FDCQ N+F  A   GG+      D+ ++FR+ +P  +   FWEN++ E + VD V +      RT HT GK++GL F ENWY+ G S+       F  V YKGHTLQG+Y+G FVYAK+P LP  A+  V   A
Sbjct:    1 AKDNQMEQSDVKCFVQQCGDQTKALFSNPRGIKGVTCLGRCKGEQACATRCFAEYGSEDLNEWLSCTIEEHECVKVPKNVDNSAEDVAVPNALAKFDPSSLIGKWYKTDGLNPNYDLFDCQSNSFVAA---GGDGAATELDMGIDFRVLRPQESGGGFWENSLTEHMVVDAVSNGDNPTGRTMHTEGKMYGLKFNENWYIVGESDGSKDVPPFKLVAYKGHTLQGNYEGAFVYAKEPVLPAAAIPAVRDAA 248          
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: K0R8I3_THAOC (VDE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8I3_THAOC)

HSP 1 Score: 251 bits (642), Expect = 7.930e-78
Identity = 135/296 (45.61%), Postives = 185/296 (62.50%), Query Frame = 1
Query:   67 AGLLFSSGIAGPGLAALADTGLAGPTSSVTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVD------PVGSCRTFHTNGKLFGLTFKENWYVTGLS--EDPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924
            AGL+F S      + ALADT    P S+      QKYDGF DYA + + ME SDVGCF N+C  +T + F++   +KGV+CLGRCKGEQ CATRCFA++GSE L++WL+CT+E++ CVK+PK++D S  +      ++ FD  TL G WYK  G+N  YD F CQ NTF  +D     D  +  D+ +  R+++P+     FW+N + E + VD      P  + RT HT GK++GL F+ENW++ G S  E     F  V YKGHTLQG+Y+G FVYAK+P +P  A+  V + A
Sbjct:   67 AGLVFGS------VPALADT----PASAT-----QKYDGFADYAKENK-MEQSDVGCFINKCGDQTKNLFSNPRGIKGVSCLGRCKGEQACATRCFAEFGSEDLNNWLSCTIEENECVKVPKNVDNSAEEVGYGSALKKFDPSTLVGKWYKTDGLNPNYDLFPCQTNTFDFSD-----DSKKELDMGIFLRVSRPEEYGGGFWDNNLKEHMIVDASMPEMPNPTGRTMHTEGKMYGLKFEENWFILGESNGEKDVPPFKLVAYKGHTLQGNYEGAFVYAKEPIIPSAAIPAVKEAA 341          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEL1_9PHAE1.750e-16976.42VDE domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FSQ0_ECTSI1.040e-16580.35VDE domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YUF5_9STRA4.880e-11860.29Violaxanthin de-epoxidase-domain-containing protei... [more]
A0A6U3VDS0_9STRA4.250e-8349.81Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4C1V0_CHRCT2.010e-8142.94Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4HQQ2_9STRA3.720e-8049.81Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2HCA8_9STRA4.060e-7946.98Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
B8C0W7_THAPS2.630e-7847.78Violaxanthin de-epoxidase-like 1 n=1 Tax=Thalassio... [more]
A0A7S2NZ74_9STRA2.850e-7848.61Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
K0R8I3_THAOC7.930e-7845.61VDE domain-containing protein n=1 Tax=Thalassiosir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9426contigC-tenellus_contig9426:1489..5688 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSQ0
Preferred nameVDL1
PFAMsVDE
Model size927
Max annot lvl2759|Eukaryota
KEGG rclassRC01624,RC03037
KEGG koko:K09839
KEGG ReactionR07178,R07179,R10055
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons6
Evalue1.71e-166
EggNOG OGs28K1H@1|root,2RY6Z@2759|Eukaryota
Ec32 ortholog descriptionviolaxanthin de-epoxidase-like protein of unknown function
Ec32 orthologEc-03_002990.1
EC1.23.5.1
DescriptionVDE lipocalin domain
Cds size927
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9426.1.1prot_C-tenellus_contig9426.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9426 1489..5688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790176.1402004-CDS-C-tenellus_contig9426:1488..17851680790176.1402004-CDS-C-tenellus_contig9426:1488..1785Choristocarpus tenellus KU2346CDSC-tenellus_contig9426 1489..1785 +
1680790176.1528594-CDS-C-tenellus_contig9426:2331..24391680790176.1528594-CDS-C-tenellus_contig9426:2331..2439Choristocarpus tenellus KU2346CDSC-tenellus_contig9426 2332..2439 +
1680790176.1635923-CDS-C-tenellus_contig9426:2759..28731680790176.1635923-CDS-C-tenellus_contig9426:2759..2873Choristocarpus tenellus KU2346CDSC-tenellus_contig9426 2760..2873 +
1680790176.1787963-CDS-C-tenellus_contig9426:3327..35041680790176.1787963-CDS-C-tenellus_contig9426:3327..3504Choristocarpus tenellus KU2346CDSC-tenellus_contig9426 3328..3504 +
1680790176.1930594-CDS-C-tenellus_contig9426:4511..45851680790176.1930594-CDS-C-tenellus_contig9426:4511..4585Choristocarpus tenellus KU2346CDSC-tenellus_contig9426 4512..4585 +
1680790176.2027328-CDS-C-tenellus_contig9426:5531..56881680790176.2027328-CDS-C-tenellus_contig9426:5531..5688Choristocarpus tenellus KU2346CDSC-tenellus_contig9426 5532..5688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9426.1.1

>prot_C-tenellus_contig9426.1.1 ID=prot_C-tenellus_contig9426.1.1|Name=mRNA_C-tenellus_contig9426.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=309bp
MSVGEGEGGAVEVLKRAGVGLLAGLLFSSGIAGPGLAALADTGLAGPTSS
VTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKG
VTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSI
IDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGE
DGGQVADIKVNFRLAKPDSNDFWENTINEKLEVDPVGSCRTFHTNGKLFG
LTFKENWYVTGLSEDPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGA
LSKVAKVAR
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mRNA from alignment at C-tenellus_contig9426:1489..5688+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9426.1.1 ID=mRNA_C-tenellus_contig9426.1.1|Name=mRNA_C-tenellus_contig9426.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4200bp|location=Sequence derived from alignment at C-tenellus_contig9426:1489..5688+ (Choristocarpus tenellus KU2346)
ATGTCTGTTGGAGAGGGTGAGGGTGGGGCGGTGGAGGTGCTCAAGCGTGC TGGTGTGGGGTTGCTGGCTGGTCTCCTCTTCAGTTCTGGGATAGCTGGGC CAGGGTTGGCGGCATTGGCGGATACTGGGTTGGCAGGGCCAACTTCCTCG GTTACTGTAGAGCAGTTGCAAAAGTATGATGGGTTTGAGGACTACGCAGC ACAGGGGCAACAGATGGAGGACAGCGATGTGGGCTGCTTTGCAAATGAGT GCAAGCATGAGACTGCGTCGTGTTTCACTGATGGCAGCTGCCTCAAGGTT AGAGACCCGTTTAGATGGAATTCAGTTGACGTTGACATTAATATTCTAAC AACCTCGCAGAACTGACCGAGTTGATCCCAATCTGTCCCCCATGTATATA CAACATGAAAGCTCCTCGGCTGGGGCCTCGTGCAATCAATCGTCATGCTA AAAGATGGGAAACTGGTTGTAAGGAGGGATTCCTCTTCACAATCGAGTTC TGCTTGCCGATTTGACTTAACCTTTAAGCTTCAGAGTTGAAGCTGTGCGA AGCACGGGCATGACTATTTTCGACCAAGGTTGAGATGAAACCGTTTTATT GAGCGCTACACCCTCCAACTCCCACTGTTAGCATTAATCATTTCAAACCA ACGGCATCACAATCTCCTCTTTTCAACACTACGTGGCATCTCAGACTTTT TTGGACTTCGTTGCATTTATGTATTTCTGTCCTTCATTGGGCGACTTCAA GGTGTTTCCTACTGCCCTACCTATGAGTCACTTCTGTACTGATGATCTAC CATCCTTTGCACACCATCCTTTTTCGATTCTCTCGTGGATCAGGGTGTGA CGTGCTTGGGAAGGTGTAAAGGGGAGCAGGAGTGTGCGACACGTTGCTTT GCGCAGTACGGGAGTGAAAAGCTAGACTCCTGGCTGACTTGTACTTTAGA GGTAGGTGACTAGGCTGCATAATTTGATGCGAGATTTTGCATTTTGGGAT GTTATTTTTATGGCATTAATACATTTGTCCATAATTGGGTTGACCAGACA CACACTTGTGTTCATCTCAATACAGATGAAAACAAGTTTAATGTCTTCTG AACAGTTTTTGAGGGACAGTCAGTGCTCCAGTCAATAAGCTGCAGTACTG CTCTAGATGGTTTGTTTTGGGTTACGAGGTTGGTTGTAGTCATCACTAGG TGGGATTATATCATAAATGAGCACTTGCTGCAGCCTGAATAAACAAATTC ACTCCTTGTTCCAATTCATAGGACCATAGCTGCGTAAAGATTCCAAAGGA CATGGACTTCTCAATAATTGACAAGGACCCTCCAAAGATTGTGCGGGGCT TTGATGCGAAAACCCTTCAGGGGACATGGTACAAGGTGTGTGCATTTAAT CAATTTTTATCAAAATATCCCGAAGGGGAGGGGCTTAGGGGAGCACAAGT TTAGTCATAATGGTGCTATATTTCCTGAACTTGTTTTAATCATTTTTACG GAAGACAGGTCTTTCCTATCAACAGAGATCCTGCTCACCCCAGCTGGTGA CTGGTTGGCCTTGTGATTGTGTGCGTGTTTTCCTTTCTTGTCTTGGAAGA GCAGTTTCATGTTGATTGCAATAGCTTCTCTAGCACATGGTGTGTTACAT GGTTGTTGAGTTGTGCTATGAATTGCTCCGACTGTTGTGTTTATTGTTCT GGAACTTTGTGTATTGAACCTCCAATACACTCATTAAGATATAAATTTAG TTTCATGAGACCATTGACTGTATCTTCTGATAGGGTGATGAAGACTGTGC ATTACATTTGCCACACATTTGATGTAACACCATGGATAGGTCATGGGGGT CAACAAGAAGTACGACTGCTTTGACTGCCAGCGAAACACCTTTTCAGTGG CTGATGGTGTGGGGGGGGAAGATGGTGGACAGGTTGCTGATATCAAGGTC AACTTTCGACTGGCCAAGCCGGATTCAAATGATTTTTGGGAAAACACCAT CAATGAGAAGCTTGAGGTGAGCAGTGACCTCTCAAAATTTTACCATGTCT TTCTATTGTGACTCTCAATCCCACTCTATTGACTAGTTGGGTGTGACGGA CCTGTGTGTTGTGTATGAGCAAGAGATCAAAGTAACTTGTCAGGTGAAAC ATTGCATCCATTACCCTGTATTAAATTTAGCATTACTTCTCTACACAAGG ATCTATCTATCCATCCAAATTGGATGGTGGTCTTTTCCCAAAGTGGCTTT TTGTATACAATGTTCCCCTTGTGGTCACTGCACTACTTTATTACTACTTG GAGAGGTCATTAAATGGCAAGTATTTGCCGCTTTAGCCTGGGACCTATTC TGTCATGTGATCAGAGGAATTACAGAATGCATTATCCTCAAAATTCTTAG TGCAGGAAACTCACTGCACTTGATATTATTTCATTGCCTCTTTGTGTTTT GACTTCAGTCATCGCACCGCTCATTACTTGGTCTACTCCCTTCAAAATTA ATTTTGTGCTGGTCCCATCTTGGTGTTGCATGACAACCTGACAATGAAAT CTTGAATATGTTGTGGTGATTCCTGTGTTTTTGTGTTACAGTGATAGGAT TGTGTCATTCATCTTTAGTGCTCATTGTGTGTGTCATTCATCTTTGGTAC TCATTGTGTGGACTTTGAATCGGGAGCCGATTTTTCCTGAAGAGAATTAT GGTGTCAGAGTATTCAAGGTCACCAAGTTCATGCAGGGAACACTGTTCAT TGATCACAGCAATGAAAATACTCCTCACATTGATAGGCATGGTTTTGTGT GTTGATTCCTCTTCTGTCAACTCCTACACACCTTCTGTGCACTCGGTAGA ACTCTCAACTAAATTAATTAAACATCATTTGGGATAAATACGTAATACAC CTTGACATCAGATAAGTTCTTCCATTCTGCTTTCAAGGCAACTGACCTCC CTACCCTAGTTCCCTGCCCACATGAAATATCACCATCTCACCATTTCCAC TTGCCCCATGCCCTCCAATTCAGGTTGACCCTGTGGGTTCTTGTCGAACC TTCCACACAAATGGAAAACTTTTTGGGCTGACTTTCAAGGAGAATTGGTG AGCTGTTCTTGTAGTGATGAGTATGTGTTAAGTGTTCTATGTCAGATAGG TTTGTTGTCCTTCGTTGAGACCCTCTCATATGCTTTGAAGGTCATGCGTT TGTTGAGGTGATAAAAAGATTTTTGCAAATAGATTTATTGTTTTTTCATT TCCTTTGCCGACCAATATATTTCTTCTACAGTTCTACAAAATAGGCTCCA CCCCTATCCATGGTCCCGCTCATCCCACTCACATGACTGACTACTGTTGC TCAAGACTAGAAAGGTTCTACTTGCAATTTGGAAACTAATTTTTCCATAT CCGAAATAATATTTTGTTGTGTCCAACATCAATACGTACATTAAACTGGA TCCTCTCACAAAATGTAGCTGTGGACAGCACTGGAAGTGGTGACCTTCAA TTTACTTGATTGTGCCTTCCTCAAGGAAATTTTTATAATATCTTAACCAT TATGCATGTAAAGCATGTTTAAATGGTAAATCCCTGTTGTTCAAGTGGTG GGAGAAGGAGACAGGTAGACATAGGTAGACATAGTTTGGAGAAAGCCCTC TTCGTCCTGCAGAATGGCAGCACTTTTTATGCATAGCTTCAAGGAGAGCT GTGATACCATCTATCCTGTTGATTGTGATTGATTGTTATTGATTACAATT TTCCCAGTAGTGGGTAGGGGGTTGATTGACGGGGAATGGACCACGCTGCT CACAAGACTGAACAGATCCCCATCTGAACAACAGTACAAGAGAAATATGC TCAGCTTCCCACATTTTTTAGTTGTGGAGGGTGACTATTTTGTATTCCAA GTTGGAGCATTGTTGGTTTTGCCTCTTTTATATCCTGTCTTTGCTTATGC TGTGAATGTGCTTTGCAGAAGGCTTGATTGAACATTACCTTGACCAGTGC CTGTCCCTCAACCCCTCCCCCCTACTGTGATATCTGTGATTAGGTACGTG ACTGGGTTATCTGAAGATCCGGGCATGGAGTTTGTGTTTGTCCAGTACAA GGGGCACACTTTGCAAGGCAGCTATGATGGAGGTTTTGTTTATGCCAAGA AGCCCACACTTCCCAAGGGAGCATTATCTAAAGTTGCTAAGGTTGCTAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig9426:1489..5688+

>mRNA_C-tenellus_contig9426.1.1 ID=mRNA_C-tenellus_contig9426.1.1|Name=mRNA_C-tenellus_contig9426.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=927bp|location=Sequence derived from alignment at C-tenellus_contig9426:1489..5688+ (Choristocarpus tenellus KU2346)
ATGTCTGTTGGAGAGGGTGAGGGTGGGGCGGTGGAGGTGCTCAAGCGTGC
TGGTGTGGGGTTGCTGGCTGGTCTCCTCTTCAGTTCTGGGATAGCTGGGC
CAGGGTTGGCGGCATTGGCGGATACTGGGTTGGCAGGGCCAACTTCCTCG
GTTACTGTAGAGCAGTTGCAAAAGTATGATGGGTTTGAGGACTACGCAGC
ACAGGGGCAACAGATGGAGGACAGCGATGTGGGCTGCTTTGCAAATGAGT
GCAAGCATGAGACTGCGTCGTGTTTCACTGATGGCAGCTGCCTCAAGGGT
GTGACGTGCTTGGGAAGGTGTAAAGGGGAGCAGGAGTGTGCGACACGTTG
CTTTGCGCAGTACGGGAGTGAAAAGCTAGACTCCTGGCTGACTTGTACTT
TAGAGGACCATAGCTGCGTAAAGATTCCAAAGGACATGGACTTCTCAATA
ATTGACAAGGACCCTCCAAAGATTGTGCGGGGCTTTGATGCGAAAACCCT
TCAGGGGACATGGTACAAGGTCATGGGGGTCAACAAGAAGTACGACTGCT
TTGACTGCCAGCGAAACACCTTTTCAGTGGCTGATGGTGTGGGGGGGGAA
GATGGTGGACAGGTTGCTGATATCAAGGTCAACTTTCGACTGGCCAAGCC
GGATTCAAATGATTTTTGGGAAAACACCATCAATGAGAAGCTTGAGGTTG
ACCCTGTGGGTTCTTGTCGAACCTTCCACACAAATGGAAAACTTTTTGGG
CTGACTTTCAAGGAGAATTGGTACGTGACTGGGTTATCTGAAGATCCGGG
CATGGAGTTTGTGTTTGTCCAGTACAAGGGGCACACTTTGCAAGGCAGCT
ATGATGGAGGTTTTGTTTATGCCAAGAAGCCCACACTTCCCAAGGGAGCA
TTATCTAAAGTTGCTAAGGTTGCTAGG
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