mRNA_C-tenellus_contig9426.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A6H5JEL1_9PHAE (VDE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL1_9PHAE) HSP 1 Score: 490 bits (1262), Expect = 1.750e-169 Identity = 243/318 (76.42%), Postives = 264/318 (83.02%), Query Frame = 1 Query: 10 GEGEGGAVEVLKRAGVGLLAGLLFSSGIAGPGLAALADTGLAGPTSSVTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGE--DGG----------QVADIKVNFRLAKPDSNDFWENTINEKLEVDPVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVAR 927 G+ G ++ +KR GVG LAGL +G G AA D G+ PTSSVTV+ LQ+YDGFEDYAAQGQQME+SDVGCFANECK ETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGS KLDSWLTCTLEDHSCVKIPKDMDFS IDKDPP IV+GF+AK LQGTWYK+MGVNKKYDCFDCQ+NTF+VA V GG QVADIKVNFRLAKPDS+DFWENTI E L+VDP S RTFHT+GKLFGL+FKENWYVTG S DPG EFVFVQY+GHTLQGSYDGGFVYA+KP LPK AL+KVAKVAR Sbjct: 134 GDAWGKVMDGIKRVGVGTLAGLFLMAG--GDVGAAFGDVGVVEPTSSVTVQDLQRYDGFEDYAAQGQQMENSDVGCFANECKRETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSNKLDSWLTCTLEDHSCVKIPKDMDFSAIDKDPPHIVKGFEAKQLQGTWYKIMGVNKKYDCFDCQKNTFNVAQAVDAPVPSGGDVTAATATPRQVADIKVNFRLAKPDSDDFWENTITETLQVDPADSPRTFHTDGKLFGLSFKENWYVTGHSTDPGEEFVFVQYRGHTLQGSYDGGFVYARKPYLPKSALAKVAKVAR 449
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: D7FSQ0_ECTSI (VDE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ0_ECTSI) HSP 1 Score: 475 bits (1222), Expect = 1.040e-165 Identity = 229/285 (80.35%), Postives = 247/285 (86.67%), Query Frame = 1 Query: 109 AALADTGLAGPTSSVTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGV------GGEDGG------QVADIKVNFRLAKPDSNDFWENTINEKLEVDPVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVAR 927 AA D G+ PTSSVTV+ LQ+YDGFEDYAAQGQQME+SDVGCFANECK ETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGS KLDSWLTCTLEDHSCVKIPKDMDFS IDKDPP IV+GF+AK LQGTWYK+MGVNKKYDCFDCQ+NTF+VA V GG+ QVADIKVNFRLAKPDS+DFWENTI E L+VDP S RTFHT+GKLFGL+FKENWYVTG S DPG EFVFVQY+GHTLQGSYDGGFVYA+KP LPK AL+KVA+VAR Sbjct: 8 AAFGDVGVVEPTSSVTVQDLQRYDGFEDYAAQGQQMENSDVGCFANECKRETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSNKLDSWLTCTLEDHSCVKIPKDMDFSAIDKDPPHIVKGFEAKQLQGTWYKIMGVNKKYDCFDCQKNTFNVAQAVDAPVPAGGDVTAATATPRQVADIKVNFRLAKPDSDDFWENTITETLQVDPADSPRTFHTDGKLFGLSFKENWYVTGHSTDPGEEFVFVQYRGHTLQGSYDGGFVYARKPYLPKSALAKVARVAR 292
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A835YUF5_9STRA (Violaxanthin de-epoxidase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF5_9STRA) HSP 1 Score: 352 bits (904), Expect = 4.880e-118 Identity = 167/277 (60.29%), Postives = 201/277 (72.56%), Query Frame = 1 Query: 175 YDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDS------------------------WLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVDPVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVAR 927 YDGF DYAA+G++M++SDVGCFANEC +T CFTDGSCLKGVTCLGRCKGEQ CATRCFA+YG KLD+ WL+CTLEDH CVKIPKD+DFS IDKDPP I + FD L+GTWYKV+GVN KYD FDCQRNTF++ GE G A + V FRLAKP++ FW+N ++E+LE+DP G+ RTFHT GK+FGLTF+ENWYV +PG EFV V+Y+GHTLQG+YDGGFVYA++P LP+ A + V AR Sbjct: 21 YDGFADYAAKGKKMDESDVGCFANECGKQTRDCFTDGSCLKGVTCLGRCKGEQ-CATRCFARYGGPKLDAQHHDQELEXXXXXXXXXXXXXXXAWLSCTLEDHECVKIPKDLDFSAIDKDPPAIAKSFDPTFLEGTWYKVLGVNPKYDLFDCQRNTFAITAANAGESGS--AQVAVEFRLAKPEAAGGGFWQNRLSERLEIDPPGAPRTFHTEGKMFGLTFRENWYVAAAGAEPGAEFVLVRYRGHTLQGTYDGGFVYAREPALPQRAAAAVRDAAR 294
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A6U3VDS0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3VDS0_9STRA) HSP 1 Score: 266 bits (679), Expect = 4.250e-83 Identity = 131/263 (49.81%), Postives = 174/263 (66.16%), Query Frame = 1 Query: 172 KYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVD--------PVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPG--MEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924 KYDGF +YA + Q ME SDVGCF N+C +T + F++ +KGV+CLGRCKGEQ CATRCFAQ+GSE LD+WL+CT+E++ CVK+PK++D S +K ++ FD K+L G WYK G+N YD FDCQ NTF A G++ D+ + FR+ +PD FWEN++ E + VD P+G RT HT GK++GL F ENWY+ G S+ G F V YKGHTLQG+Y+G FVYAK+ LP+ A+ V + A Sbjct: 103 KYDGFAEYAKENQ-MEKSDVGCFMNKCGDQTKALFSNPRGIKGVSCLGRCKGEQTCATRCFAQFGSEDLDNWLSCTIEENECVKVPKNVDNSEENKGYSTAIKNFDPKSLIGNWYKTDGLNPNYDLFDCQSNTFEFASTAPGKEANDELDMGIFFRVVRPDEAGGGFWENSLTEHMVVDAANPEVPNPLG--RTMHTEGKMYGLKFNENWYIIGESDGKGDIPAFKLVAYKGHTLQGNYEGSFVYAKERILPEAAVPAVREAA 362
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A7S4C1V0_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1V0_CHRCT) HSP 1 Score: 260 bits (665), Expect = 2.010e-81 Identity = 140/326 (42.94%), Postives = 193/326 (59.20%), Query Frame = 1 Query: 28 AVEVLKRAGVGLLAGLLFSSGIAGPGLAALADTGLAGPTSSVTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANE--CKHETASCFT---------DGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQ-----------GTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVDPVGSC--RTFHTNGKLFGLTFKENWYVTGLSE--DPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKV 921 A +K A +L+ L SS + P LAA ++ YDGF +YAA G +ME++DV C E C+ +T +CF+ D SCLKGV CLGRCKGEQ+CAT+CFAQYGS LD+WL+C +ED CVK+P+D+D+S I+K+PP ++R F A+ L G+WYKV+G+N KYD +DCQ NTF + I + FR+ +P++ W N E+L +D G+ R+FHT GK+FGLTF ENWY+ G + D F YKGHTLQG+Y+G FV+AK+P+ P+ + +AKV Sbjct: 36 AANFMKAAYAAVLSTALLSSTLQAPALAA----------------DIRTYDGFAEYAADGNKMEETDVNCLIGETQCRAQTFACFSGQEQLGGTGDLSCLKGVVCLGRCKGEQKCATQCFAQYGSSTLDNWLSCAIEDQKCVKVPQDLDYSQINKNPPPVMRNFKAEQLAAGPAAVEDREAGSWYKVLGLNPKYDLYDCQVNTFRKTSASSMQ-------IDIEFRVPRPNAPPTAAWPNRFVEQLSIDDEGNALGRSFHTEGKMFGLTFNENWYILGGRDAADGVDPFWVAAYKGHTLQGNYEGAFVFAKQPSFPESSREALAKV 338
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A7S4HQQ2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQQ2_9STRA) HSP 1 Score: 258 bits (659), Expect = 3.720e-80 Identity = 131/263 (49.81%), Postives = 175/263 (66.54%), Query Frame = 1 Query: 172 KYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVD--------PVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPG--MEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924 KYDGF +YA + + ME SDV CF N+C +T + FT+ +KGV+CLGRCKGEQ CATRCFA++GSE L+SWL+CT+ED+ CVKIPK++D S V+ F+ K+L GTWYK G+N YD FDCQ NTF+++ G EDG ++ D+ + R+++P +W+N + E + VD P S RT HT GK++GL+F ENWY+ G S+ G F V YKGHTLQG+Y+G FVYAK+P LP+ A V VA Sbjct: 99 KYDGFAEYAKENK-MEKSDVSCFMNKCGDQTKALFTNPRGIKGVSCLGRCKGEQSCATRCFAEFGSEDLNSWLSCTIEDNECVKIPKNIDNSAEMMGYDSTVKNFNPKSLVGTWYKTDGLNPNYDLFDCQSNTFTLSP--GAEDGSEL-DMGIFLRVSRPAELGGGYWDNDLTEHMVVDAAPSNAGLPNPSKRTMHTEGKMYGLSFYENWYILGESDGKGDVPPFKLVAYKGHTLQGNYEGAFVYAKEPKLPEAAKQAVRDVA 357
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A7S2HCA8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HCA8_9STRA) HSP 1 Score: 255 bits (652), Expect = 4.060e-79 Identity = 132/281 (46.98%), Postives = 174/281 (61.92%), Query Frame = 1 Query: 115 LADTGLAGPTSSVTV-EQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDSND--FWENTINEKLEVD------PVGSCRTFHTNGKLFGLTFKENWYVTGLSEDPG--MEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924 LA T P + T KYDGF +YA + Q ME SDV CF +C +T + F++ +KGV+CLGRCKGEQ CATRCFAQ+GSE LD+WL+CT+E++ CVK+PK++D S +K +V+ FD +L GTW+K G+N YD FDCQ NTF A D D+ + FR+ +P + +WEN + E + VD P S RT HT GK++GL F ENWY+ G S+ G F V YKGHTLQG+Y+G FVYAK+ LP+ A+ V A Sbjct: 79 LASTSFLSPAIAETAASSTAKYDGFAEYAKENQ-MEKSDVNCFITKCGDQTKALFSNPRGIKGVSCLGRCKGEQACATRCFAQFGSEDLDNWLSCTIEENECVKVPKNVDNSEENKGYTTVVKNFDPSSLIGTWFKTDGLNPNYDLFDCQSNTFEFASSANKND---ELDMGIFFRVIRPSESGGGYWENALTEHMVVDAANADVPNPSGRTMHTEGKMYGLKFNENWYIIGESDGKGDVPPFKLVAYKGHTLQGNYEGAFVYAKERILPEAAVPAVKDAA 355
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: B8C0W7_THAPS (Violaxanthin de-epoxidase-like 1 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0W7_THAPS) HSP 1 Score: 253 bits (647), Expect = 2.630e-78 Identity = 129/270 (47.78%), Postives = 169/270 (62.59%), Query Frame = 1 Query: 145 SSVTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVDPVG------SCRTFHTNGKLFGLTFKENWYVTGLSEDPG--MEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924 +S QKYDGF +YA + + ME SDVGCF N+C +T F++ +KGV+CLGRCKGEQ CATRCFA++GSE LD+WL+CT+ED+ CVK+PK++D S + V+ FD TL G WYK G+N YD FDCQ NTF +D E D+ + FR+ +P+ FWEN++ E + VD V + RT HT GK++GL F ENWY+ G S F V YKGHTLQG+Y+ FVYAK+ LPK A+ V + A Sbjct: 98 ASTPASTTQKYDGFAEYAKENK-MEQSDVGCFINKCGDQTKQLFSNPRGIKGVSCLGRCKGEQSCATRCFAEFGSEDLDNWLSCTIEDYECVKVPKNIDNSAENVGYDTTVKKFDPSTLVGKWYKTDGLNPNYDLFDCQSNTFDFSDDTKKE-----LDMGIFFRVPRPEEYGGGFWENSLTEHMIVDAVSPELDNPTGRTMHTAGKMYGLKFTENWYILGESNGDNDIPPFKLVAYKGHTLQGNYEEAFVYAKESVLPKEAVGAVREAA 361
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: A0A7S2NZ74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZ74_9STRA) HSP 1 Score: 249 bits (636), Expect = 2.850e-78 Identity = 122/251 (48.61%), Postives = 160/251 (63.75%), Query Frame = 1 Query: 199 AQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDSND--FWENTINEKLEVDPVGSC-----RTFHTNGKLFGLTFKENWYVTGLSEDPG--MEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924 A+ QME SDV CF +C +T + F++ +KGVTCLGRCKGEQ CATRCFA+YGSE L+ WL+CT+E+H CVK+PK++D S D P + FD +L G WYK G+N YD FDCQ N+F A GG+ D+ ++FR+ +P + FWEN++ E + VD V + RT HT GK++GL F ENWY+ G S+ F V YKGHTLQG+Y+G FVYAK+P LP A+ V A Sbjct: 1 AKDNQMEQSDVKCFVQQCGDQTKALFSNPRGIKGVTCLGRCKGEQACATRCFAEYGSEDLNEWLSCTIEEHECVKVPKNVDNSAEDVAVPNALAKFDPSSLIGKWYKTDGLNPNYDLFDCQSNSFVAA---GGDGAATELDMGIDFRVLRPQESGGGFWENSLTEHMVVDAVSNGDNPTGRTMHTEGKMYGLKFNENWYIVGESDGSKDVPPFKLVAYKGHTLQGNYEGAFVYAKEPVLPAAAIPAVRDAA 248
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Match: K0R8I3_THAOC (VDE domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8I3_THAOC) HSP 1 Score: 251 bits (642), Expect = 7.930e-78 Identity = 135/296 (45.61%), Postives = 185/296 (62.50%), Query Frame = 1 Query: 67 AGLLFSSGIAGPGLAALADTGLAGPTSSVTVEQLQKYDGFEDYAAQGQQMEDSDVGCFANECKHETASCFTDGSCLKGVTCLGRCKGEQECATRCFAQYGSEKLDSWLTCTLEDHSCVKIPKDMDFSIIDKDPPKIVRGFDAKTLQGTWYKVMGVNKKYDCFDCQRNTFSVADGVGGEDGGQVADIKVNFRLAKPDS--NDFWENTINEKLEVD------PVGSCRTFHTNGKLFGLTFKENWYVTGLS--EDPGMEFVFVQYKGHTLQGSYDGGFVYAKKPTLPKGALSKVAKVA 924 AGL+F S + ALADT P S+ QKYDGF DYA + + ME SDVGCF N+C +T + F++ +KGV+CLGRCKGEQ CATRCFA++GSE L++WL+CT+E++ CVK+PK++D S + ++ FD TL G WYK G+N YD F CQ NTF +D D + D+ + R+++P+ FW+N + E + VD P + RT HT GK++GL F+ENW++ G S E F V YKGHTLQG+Y+G FVYAK+P +P A+ V + A Sbjct: 67 AGLVFGS------VPALADT----PASAT-----QKYDGFADYAKENK-MEQSDVGCFINKCGDQTKNLFSNPRGIKGVSCLGRCKGEQACATRCFAEFGSEDLNNWLSCTIEENECVKVPKNVDNSAEEVGYGSALKKFDPSTLVGKWYKTDGLNPNYDLFPCQTNTFDFSD-----DSKKELDMGIFLRVSRPEEYGGGFWDNNLKEHMIVDASMPEMPNPTGRTMHTEGKMYGLKFEENWFILGESNGEKDVPPFKLVAYKGHTLQGNYEGAFVYAKEPIIPSAAIPAVKEAA 341 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9426.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9426.1.1 >prot_C-tenellus_contig9426.1.1 ID=prot_C-tenellus_contig9426.1.1|Name=mRNA_C-tenellus_contig9426.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=309bp MSVGEGEGGAVEVLKRAGVGLLAGLLFSSGIAGPGLAALADTGLAGPTSSback to top mRNA from alignment at C-tenellus_contig9426:1489..5688+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9426.1.1 ID=mRNA_C-tenellus_contig9426.1.1|Name=mRNA_C-tenellus_contig9426.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4200bp|location=Sequence derived from alignment at C-tenellus_contig9426:1489..5688+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9426:1489..5688+ >mRNA_C-tenellus_contig9426.1.1 ID=mRNA_C-tenellus_contig9426.1.1|Name=mRNA_C-tenellus_contig9426.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=927bp|location=Sequence derived from alignment at C-tenellus_contig9426:1489..5688+ (Choristocarpus tenellus KU2346)back to top |