mRNA_C-tenellus_contig9419.2.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9419.2.2
Unique NamemRNA_C-tenellus_contig9419.2.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Match: D8LNE9_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE9_ECTSI)

HSP 1 Score: 358 bits (919), Expect = 1.160e-113
Identity = 175/259 (67.57%), Postives = 209/259 (80.69%), Query Frame = 3
Query:  315 TPAGLTLEGVYKRVKIEAQGLEDGAVALDSKDVDYGVEIVKVKMPREPSLGIQLVEVARGADGRGLVLVSGLEPGGRAEVSGKVEIGDTLSWVGVEPNRMIRVEALDWDQTVNALSQYTGDSEITLVLKRLIKREMLDVVFKLPNGDRTEAILAGSNLRGEMIRLGVPVYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPADEEELMLMAQGVLPTRWRLSCKTIVGMNNDSGTVTLKAVPQAEWREAQSQ 1091
            +P+GLTL+GVYKR+ +E Q   DG V L+SKD DY +E+VKV+M R+PSLG+QL EVARG DGRGLVLV+GLEPGG AE SGK+ +GDTL   G+E + M RVEALDWDQTV+ L  +  +SEI LV+KRL+KRE ++V F+LP+G R   I AGSNLRGEMIRL VPVYDP+TKR+DQPYATGNC GEG CGTCFVEVQQGA+LL+  D+EELML+++G LP RWRLSCK IVG  N +GTV LKAVPQAEWR    Q
Sbjct:   80 SPSGLTLDGVYKRLTLETQSRADGVVGLESKDTDYAIEVVKVQMQRKPSLGMQLEEVARGGDGRGLVLVAGLEPGGNAEASGKICVGDTLCSAGIEGD-MSRVEALDWDQTVSVLGSFAEESEIVLVIKRLVKRESINVQFELPSGSRDHEIKAGSNLRGEMIRLDVPVYDPRTKRFDQPYATGNCAGEGTCGTCFVEVQQGADLLTSPDQEELMLLSRGNLPVRWRLSCKVIVGKENKAGTVRLKAVPQAEWRSQARQ 337          
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Match: A0A7S4DIM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIM7_HETAK)

HSP 1 Score: 246 bits (628), Expect = 2.560e-71
Identity = 126/250 (50.40%), Postives = 166/250 (66.40%), Query Frame = 3
Query:  324 GLTLEGVYKRVKIEAQGLEDGAVALDSKDVDYGVEIVKVKMPREPSLGIQLVEVARGADGRGLVLVSGLEPGGRAEVSGKVEIGDTLSWVGVEPNRMIRVEALDWDQTVNALSQYTGDSEITLVLKRLIKREMLDVVFKLPNGDRTEA-ILAGSNLRGEMIRLGVPVYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPADEEELMLMAQGVLPTRWRLSCKTIVGMNNDSGTVTLKAVPQAE 1070
            GLTLE +    K+    L++G   LD++DV+YG+EI K ++ RE  LG+ L E+  G DGRGLVLV  +  GG A  +G+  +GD LSWVG EP  M RVE LD+D T+ AL +Y     +TLV KRL++R+ L+V    P+G   +  +LAGS LRGEM+R G+ VYDP  KR+DQPY TGNCGGEG+CGTC V V +G  LLS  D  E M++ +   P R+RLSC+TIVG+ N  G V LK++P  E
Sbjct:   66 GLTLEEIAGLFKMSVFDLDEGLYGLDTRDVNYGIEIAKARVSREGGLGLGLSEMMAGRDGRGLVLVEDVAEGGNAATTGQFRVGDALSWVGEEPGDMTRVEGLDFDGTLAALGKYADREAVTLVAKRLVRRQPLEVTLIQPDGSEAKLEMLAGSVLRGEMLRQGLQVYDPSQKRFDQPYVTGNCGGEGLCGTCLVAVLEGKELLSLPDRVEAMVLEKR--PARYRLSCRTIVGVTNQPGKVVLKSMPTLE 313          
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Match: A0A836CRA8_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA8_9STRA)

HSP 1 Score: 239 bits (610), Expect = 4.030e-69
Identity = 132/267 (49.44%), Postives = 173/267 (64.79%), Query Frame = 3
Query:  309 PLTPAGLTLEGVYKRVKIEAQGLEDGAVALDSKDVDYGVEIVKVKMPREPSLGIQLVEVARGADGRGLVLVSGLEPGGRAEVSGKVEIGDTLSWVGVEPNR-MIRVEALDWDQTVNALSQYTGDSEITLVLKRLIKREMLDVVFKLPN-----------GDRTEAILAGSNLRGEMIRLGVPVYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPADEEELMLMAQGVLPTRWRLSCKTIVGMNNDSGTVTLKAVPQAEW 1073
            P+   G++LEG+YKR+KIE   L++G + L+S+D  +G+EIV                       RGLVL+   + GG A  SG +  GDTL++VG E  R M RVE  D+D TV AL +Y   +EITLVLKRL++R+ L+V F+ P            G +   +LAGSNLR EMIR  +PVYD KT+R+DQPYATGNCGGEGICGTCFVEVQ+GA LLSP D  E M+M    LP RWRLSC+T+VG  N++G V L+++PQ+ +
Sbjct:   36 PVNADGVSLEGIYKRLKIEILDLDEGIIGLESRDPAFGIEIV-----------------------RGLVLIG--DVGGNAAESGLINTGDTLTYVGNEAARDMTRVEGQDYDTTVAALGKYADLAEITLVLKRLVQRKTLEVTFETPTAYAEDGTAVEWGGQGVQMLAGSNLRSEMIRRDIPVYDAKTRRFDQPYATGNCGGEGICGTCFVEVQEGAELLSPPDGLENMVMRN--LPRRWRLSCRTVVGGKNEAGQVRLRSIPQSAY 275          
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Match: A0A4D9CWU2_9STRA (PDZ domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWU2_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.150e-63
Identity = 128/268 (47.76%), Postives = 163/268 (60.82%), Query Frame = 3
Query:  318 PAGLTLEGVYKRVKIEAQGLEDGAVALDSKDVDYGVEIVKVKMPR-EPSLGIQLVEVARGADGRGLVLVSGLEPGGRAEVS----GKVEIGDTLSWVGVEPNRMIRVEALDWDQTVNALSQY--TGDSEITLVLKRLIKREMLDVVFKLPNGDRTEA-----------ILAGSNLRGEMIRLGVPVYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPADEEELMLMAQGVLPTRWRLSCKTIVGMNNDSGTVTLKAVPQA 1067
            P  LTLE +  ++K E   L+ GA  L+SKDV Y VEI KV +P  E  +G+ L E+ RG DGRG VLVS L P G A  +    GK+ +GD + ++G EP  M+R E LD++QT+ AL ++  TG   ITLVLKRL+ R  LDV      G   E+           +LAGS LR E++R G+PVY   T R+DQPY TGNCGGEGICGTC V+V +G  LL+  DE E M+  +      WRLSC+ IVG  N  GTV  K +PQA
Sbjct:   12 PPPLTLEEISNKIKFEITDLDAGAYGLESKDVAYAVEIAKVDIPLGEGGIGLGLEELRRGQDGRGCVLVSSLPPEGNAAQAAGDDGKIRVGDMICYLGQEPRGMVRTEGLDFEQTMGALRRFLETGAPAITLVLKRLVFRASLDVSLSYTPGPDEESQGRKAWTQTLPMLAGSQLRKELLRAGLPVYSQDTLRFDQPYVTGNCGGEGICGTCLVQVLEGKELLNEKDEVEAMVTRKWGA-ANWRLSCRVIVGATNTPGTVRFKLMPQA 278          
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Match: A0A7S2V297_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V297_9STRA)

HSP 1 Score: 198 bits (503), Expect = 5.140e-55
Identity = 106/205 (51.71%), Postives = 141/205 (68.78%), Query Frame = 3
Query:  504 RGLVLVSGLEPGGRAEVSGKVEIGDTLSWVG---VEPNRMIRVEALDWD---QTVNALSQYTGDSEITLVLKRLIKREMLDVVFKLPNG-DRTEAILAGSNLRGEMIRLGVP--VYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPADEEELMLMAQGVLPTRWRLSCKTIVGMNNDSGTVTLKAVPQAEWREAQSQ 1091
            RGLVLV  L PGG A +S K+ +GDTL       V    ++ +EA+D D   Q + ALS  +   ++ L+ KRL+KREM++V   LP+G ++T  +L+GSNLRGEMIR G+P  +YDP+TKRYDQP+ TGNCGGEGICGTC +EV  G  +LS AD  E ML+     P RWRLSC+T VG +N SG+V ++AVPQ E RE++ +
Sbjct:    1 RGLVLVKDLAPGGNAALSAKIRVGDTLCRAADPTVGARSVVSLEAVDLDGTLQNLGALSFASRQKQLVLIFKRLVKREMVNVKIALPDGGEKTLQMLSGSNLRGEMIRQGLPEYIYDPETKRYDQPFITGNCGGEGICGTCLIEVMDGPEMLSEADNLENMLLENQ--PIRWRLSCRTFVGPDNKSGSVKVRAVPQKEMRESRKK 203          
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Match: A0A7R9YBT6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBT6_9STRA)

HSP 1 Score: 187 bits (474), Expect = 1.840e-49
Identity = 105/255 (41.18%), Postives = 156/255 (61.18%), Query Frame = 3
Query:  327 LTLEGVYKRVKIEAQGLEDGAVALDSKDVDYGVEIVKVKMPREPSLGIQLVEVARGAD---GRGLVLVSGLEPGGRAEVSG-KVEIGDTLSWVGVEPNRMIRVEALDWDQTVNALSQYT-GDSEITLVLKRLIKREMLDVVFKLPNGDRTEAIL-AGSNLRGEMIRLGVPVYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPADEEELMLMAQGVLPTRWRLSCKTIVGMNNDSGTVTLKAVPQAEW 1073
            L++E +  R+ I+   ++DG   L  +D  YG+++VK  + R+PSLGI L E+   +D    R LVLV GLE  G A   G  +E+GD ++ +       I  E  D+D  ++ +     G  E+TLV+ RL++R M+ + ++LPNGDR+     AGSNLRG  ++ GV +YD +T+R+D PYATG+C GEG+CGTC V V  G +LLSPAD  E  L+ +G  P  WR +C+  VG +N  GTV ++  PQ+ +
Sbjct:   58 LSVEDIADRLAIQVFDMDDGKFGLSCRDPAYGLKVVKTSVKRKPSLGIVLNEMVDASDPSADRALVLVGGLE--GNAAAEGVDLEVGDVITAIADGSGGYISTEGRDYDFLIDTIVGVDPGAEELTLVVNRLVERAMVTINYELPNGDRSSVQAPAGSNLRGIFLQEGVRLYDERTRRFDMPYATGDCAGEGLCGTCLVNVWSGEDLLSPADRNEA-LICKG-RPMGWRAACRVFVGADNQEGTVEVRLQPQSRF 308          
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Match: A0A7S3P6U2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6U2_9STRA)

HSP 1 Score: 179 bits (454), Expect = 6.590e-46
Identity = 100/257 (38.91%), Postives = 152/257 (59.14%), Query Frame = 3
Query:  342 VYKRVKIEAQGLEDGAVALDSKDVDYGVEIVKVKMP---REPSLGIQLVEVARGADGRGLVLVSGLEPGGRAEVSGKVEIGDTLSWVGVEPNRMI-RVEALDWDQTVNALSQYT-----GDSEITLVLKRLIKREMLDVVFKLPNGDRTEA-ILAGSNLRGEMIRLGVPVYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPAD-EEELMLMAQGVLPTRWRLSCKTIVGMNNDSGTVTLKAVPQAEWRE 1079
            + +R+K+E   LE+G    DS+D  YG+E+++ ++P     PSLG+ L E+A   DGRGLVLVS +    +   S  + +GD ++ V      +  R   L++D+TV A+         GD  + L L RL+KR  + V    P  + T    LAG NLR  ++R  + +Y+ KTKR+D PYATG+C GEG+CGTC V V +G +LL+P D  EEL+   +   P  WR SC+T+VG NN+ GT+ ++  PQ+++ +
Sbjct:  125 IARRLKLEIFDLEEGIFGFDSQDPVYGLEVIQTEIPLSSENPSLGLVLTEMAGNKDGRGLVLVSEVTGNAKNARSSPILVGDVITGVRTSDGSLRERTTGLNYDRTVEAVGDVKEAALKGDGTLHLELNRLVKRATIQVQVVQPGKNVTTIEALAGENLRRLLLRKDIRLYNRKTKRFDMPYATGDCAGEGLCGTCLVAVNEGMDLLNPKDGAEELITRGR---PLSWRASCRTVVGSNNEGGTIQVRVQPQSDFED 378          
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Match: B7G5I1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5I1_PHATC)

HSP 1 Score: 165 bits (418), Expect = 7.390e-42
Identity = 102/257 (39.69%), Postives = 146/257 (56.81%), Query Frame = 3
Query:  348 KRVKIEAQGLEDGAVALDSKDVDYGVEIVKVKMP-REPSLGIQLVEVARGADGRGLVLVSGLEPGGRAEVSGKVEIGDTLSWVGVEPNRMI---RVEALDWDQTVNALS---QYTGDSEITLVLKRLIKREMLDVVFKLPNGDRTEAI---LAGSNLRGEMIRLGVPVYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPADEEELMLMAQGVLPTRWRLSCKTIVGMNNDSGTVTLKAVPQAEWREAQS 1088
            ++ K+E   L++G    DSKD  YG+E+V   +      LG+ L E+A   DGRGLV+VS +           + +GDT++  GV  N  +   RV A ++D+TV A+    + + D  ITL L RLIKR  L V  ++ +G     +   LAG NLR   +R  + +YD +T+R+DQP+ TGNCGG+G+CGTC V V QG +LL+P D  E+ +      P  WR SC+T VG NN  GT+ +   PQ+E  E  S
Sbjct:   54 QKFKLEIFDLDEGLFGFDSKDNRYGLEVVHTNIDVGNDGLGLVLTEMAGSPDGRGLVMVSKITGNAAKANPQAIHVGDTIT--GVMANDGVLKERVTAFNYDKTVEAIGRAKESSTDGTITLELNRLIKR--LPVRVEIDDGSGHVQVIEALAGENLRRMFMRKQLKLYDERTRRFDQPFNTGNCGGDGVCGTCLVNVLQGMDLLNPKDSHEVFITKGR--PPSWRASCRTTVGFNNVGGTLRISLHPQSELPEELS 304          
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Match: A0A8J2SE60_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SE60_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.200e-35
Identity = 97/256 (37.89%), Postives = 143/256 (55.86%), Query Frame = 3
Query:  330 TLEGVYKRVKI---EAQGLEDGAVALDSKDV-DYGVEIVK-VKMPREPSLGIQLVEVARGADGRGLVLVSGLEPGGRAEVSGKVEIGDTLSWVGVEPNRMIRVEALDWDQTVNALSQYTGDSEITLVLKRLIKREMLDVVFKLPNGDRTEAIL---AGSNLRGEMIRLGVPVYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPADEEELMLMAQGVLPTRWRLSCKTIVG---MNNDSGTVTLKAVPQ 1064
            TL  VY +  +   E+  ++ G +    +D   YG E V  + + R P LGI+L+EVA   +G G+V+V G   G  A  S  ++ GD +++VG        VEA  WD TV+AL +  GD ++ LV+KRL+KR ++DV  K PNG++ + +L   AG NLR  M+   V + DP  +R+D     G+CG  G C TC V V  GA +LSP    E  +M     P R+RL+CKT VG    N ++G +T++  P+
Sbjct:   44 TLNEVYAQWGVCVEESTAIKVGGLLFSPQDPRTYGTETVDGIILTRSPGLGIELLEVANNNEGVGIVVVDGTVAGSSAADSA-LQKGDVIAFVGQPGGPFESVEAKTWDDTVDALGRVEGD-QVELVVKRLVKRPVVDVTVKHPNGEQPDQVLRLFAGENLRRAMLTRRVALNDPLARRFDDNDVGGDCGSGGACCTCAVAVLAGAEMLSPQKASERQIMKTLRQP-RFRLACKTAVGEGLQNGETGKMTIRINPR 296          
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Match: R1DEK5_EMIHU (PDZ domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEK5_EMIHU)

HSP 1 Score: 125 bits (315), Expect = 1.980e-28
Identity = 80/238 (33.61%), Postives = 121/238 (50.84%), Query Frame = 3
Query:  381 DGAVALDSKDVDYGVEIVKVKMPRE---PSLGIQLVEVARGADGRGLVLVSGLEPGGRAE-VSGKVEIGDTLSWVGVE--PNRMIRVEALDWDQTVNALSQYTGDSEITLVLKRLIKREMLDVVFKLPNGDRTE----AILAGSNLRGEMIRLGVPVYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPADEEELMLMAQGVLPTRWRLSCKTIVGMNNDSGTVTLKAVPQ 1064
            DGA+ L + +     ++V V +PR    PSLG+ L E+A   D  G+V V GL  GG  E  +  +  GD L     E  P   + +E L +D  V  LS  +    + + +KRL+++    V  + P  +  E     +  G+NLR  M+  GV + DP  +R+D    TG+CGGEG C TC VEV +G + LS    +E+ ++A+     RWRL+CK  +G       + LK  P+
Sbjct:   18 DGALTLAAAEAGTEAQVVTVTIPRSDDAPSLGLLLDEIATSGDA-GIVAVEGLVEGGNGEKATAPLLPGDALVAAAEEGKPTTGVSLEGLPFDSVVERLSSLSSAVGVVVSVKRLVRKPRATVTVRFPEAEGREDARMTLYQGANLRRAMLSSGVALNDPLARRFDAGVGTGDCGGEGTCCTCAVEVAKGLDALSEPSSQEVQMVAKRF--PRWRLACKATLGPIEQDEEIVLKVQPR 252          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9419.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNE9_ECTSI1.160e-11367.57Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A7S4DIM7_HETAK2.560e-7150.40Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836CRA8_9STRA4.030e-6949.442Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A4D9CWU2_9STRA2.150e-6347.76PDZ domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7S2V297_9STRA5.140e-5551.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9YBT6_9STRA1.840e-4941.18Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3P6U2_9STRA6.590e-4638.91Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B7G5I1_PHATC7.390e-4239.69Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A8J2SE60_9STRA1.200e-3537.89Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
R1DEK5_EMIHU1.980e-2833.61PDZ domain-containing protein n=2 Tax=Emiliania hu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9419contigC-tenellus_contig9419:781..4477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LNE9
PFAMsFer2
Model size2467
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009767,GO:0009773,GO:0009987,GO:0010598,GO:0015979,GO:0016020,GO:0019684,GO:0022900,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0055114,GO:0098796
Exons5
Evalue9.79e-121
EggNOG OGsCOG0633@1|root,2S4WU@2759|Eukaryota
Ec32 ortholog descriptionFerredoxin
Ec32 orthologEc-04_004110.1
Description2Fe-2S iron-sulfur cluster binding domain
Cds size1041
COG categoryC
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9419.2.2prot_C-tenellus_contig9419.2.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9419 834..3104 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790175.9673345-UTR-C-tenellus_contig9419:780..8331680790175.9673345-UTR-C-tenellus_contig9419:780..833Choristocarpus tenellus KU2346UTRC-tenellus_contig9419 781..833 +
1680790176.0482764-UTR-C-tenellus_contig9419:3104..44771680790176.0482764-UTR-C-tenellus_contig9419:3104..4477Choristocarpus tenellus KU2346UTRC-tenellus_contig9419 3105..4477 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790175.980871-CDS-C-tenellus_contig9419:833..12021680790175.980871-CDS-C-tenellus_contig9419:833..1202Choristocarpus tenellus KU2346CDSC-tenellus_contig9419 834..1202 +
1680790175.993552-CDS-C-tenellus_contig9419:1352..16091680790175.993552-CDS-C-tenellus_contig9419:1352..1609Choristocarpus tenellus KU2346CDSC-tenellus_contig9419 1353..1609 +
1680790176.010285-CDS-C-tenellus_contig9419:1827..19661680790176.010285-CDS-C-tenellus_contig9419:1827..1966Choristocarpus tenellus KU2346CDSC-tenellus_contig9419 1828..1966 +
1680790176.0255904-CDS-C-tenellus_contig9419:2543..26331680790176.0255904-CDS-C-tenellus_contig9419:2543..2633Choristocarpus tenellus KU2346CDSC-tenellus_contig9419 2544..2633 +
1680790176.0370238-CDS-C-tenellus_contig9419:2918..31041680790176.0370238-CDS-C-tenellus_contig9419:2918..3104Choristocarpus tenellus KU2346CDSC-tenellus_contig9419 2919..3104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9419.2.2

>prot_C-tenellus_contig9419.2.2 ID=prot_C-tenellus_contig9419.2.2|Name=mRNA_C-tenellus_contig9419.2.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=347bp
MTHTSTVRKSHQCMVLLLLSVCLSTWSSNAFVTIPNHRLILTPTLRWPAT
TSVGTKVRSTVTKPLLPSATEGGIGEESENKEGSGPLTPAGLTLEGVYKR
VKIEAQGLEDGAVALDSKDVDYGVEIVKVKMPREPSLGIQLVEVARGADG
RGLVLVSGLEPGGRAEVSGKVEIGDTLSWVGVEPNRMIRVEALDWDQTVN
ALSQYTGDSEITLVLKRLIKREMLDVVFKLPNGDRTEAILAGSNLRGEMI
RLGVPVYDPKTKRYDQPYATGNCGGEGICGTCFVEVQQGANLLSPADEEE
LMLMAQGVLPTRWRLSCKTIVGMNNDSGTVTLKAVPQAEWREAQSQ*
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mRNA from alignment at C-tenellus_contig9419:781..4477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9419.2.2 ID=mRNA_C-tenellus_contig9419.2.2|Name=mRNA_C-tenellus_contig9419.2.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3697bp|location=Sequence derived from alignment at C-tenellus_contig9419:781..4477+ (Choristocarpus tenellus KU2346)
AAAATGTATCTTGTTCAACTACCTTCCTTCCCTCTAAGTACCAGTGTCTC ATCATGACCCATACCTCTACAGTTCGAAAGTCTCACCAATGTATGGTGTT GTTGCTCTTGAGCGTATGCCTCTCCACCTGGTCATCAAACGCGTTCGTCA CGATTCCCAATCACCGTCTAATATTGACTCCAACACTTAGATGGCCTGCA ACAACATCGGTTGGCACAAAGGTCAGGTCTACTGTAACAAAACCTCTATT ACCGTCGGCAACAGAAGGTGGTATCGGAGAAGAATCGGAAAACAAGGAAG GGTCGGGTCCCCTGACTCCTGCGGGTCTTACCCTGGAGGGAGTGTACAAA CGAGTCAAAATAGAGGCGCAGGGTTTGGAGGATGGAGCGGTAGCACTAGA CAGCAAGGATGTGGATTATGGGGTAAGTTGACTTTCCTGGAATCGGGTTA ACCTGCAGCAATCCAGATATGCCTGCGTTAGGTCCCTCATTCAGGCGGTG GGGGGAGGTTTAGATTCCTATTGTTTCTCATACACATTCTCCATGTTCTC TTACCTCCCTGAGTGAGGGCAGGTGGAGATAGTCAAGGTGAAAATGCCCC GAGAGCCATCCCTTGGTATTCAGCTTGTGGAAGTGGCGCGAGGGGCTGAT GGAAGAGGTCTTGTCCTTGTCTCAGGCTTAGAACCTGGGGGCCGGGCGGA AGTGAGCGGGAAGGTGGAAATTGGGGACACCTTGAGCTGGGTTGGAGTGG AGCCCAATCGCATGATTCGAGTCGAGGCCTTGGATTGGGACCAAACTGTA AATGCGCTGAGTCAGTACACTGGAGACAGGTGTGCCTAGGTGTGGACAAG AGGATTGCGATGACTGAAAAGTGAAGCCGCCAGTTTGGCGGTCTCGAGCA ATGCAAATATGGACTGGGTGTCGTGATACAGCCGCCAACAAGAAACGGCA ATCATTGTTATTGTTTCAAATTTGAAGTGGTACTGCGAGGTGATGTATTC TACCTGCCCCTTCCCCCCTTCTCCTCTATCCCATACATGTGAGGCAGCGA GATCACCCTGGTCCTGAAGCGTTTGATCAAGCGAGAGATGCTGGATGTAG TGTTCAAACTTCCAAATGGCGATAGGACGGAAGCAATCTTGGCAGGCAGC AACCTTCGGGGAGAAATGATTCGCTTGGGGGTCCCTGTGAGCTCTGTGGA AGCTATGAAGATATTTTTGGATAAATTTGTAACTGTAGCTGTACTGAATC TGTTTTTTCTCACGAATGCATGCTGTTGAACTCTTATAAAGAGGAGATCG TAGACAAGTCCATCACCTACTATGTGTATTTTTAATACTTGCGCATACTA CACAGGATGCTACTTCCAATTCCTGGTGAACTGATTCCCTCGTTTCACTC AGTTTTTGTGTTGTAAGGGGGAATCACTGAGAGCACTTTTGTGAAATTCA AATGTCAAAGCTAGACTATGTGAGTTTACCATCAAACTGTGGTGCTTTCT TTCTCTCATCAGAGGGGTGATTTTGATGCTATTGGTTTGTCTTCCTGATG CGCAACAAGCACCAACCCAAGCGCAAAATGCAGTAGAATTATACACCCAA AGTATATTATGTGTACAAGTAGAAGTGCCTGTCAGACGTGATCGATCCAT TTGACACGGACACTTGTTGTACAGAGTATTGCAAACAAATCGCCTTGCCT GTCCTGTGTGCACAAGCGCCTTCCCACATATCCGTTCAGATTTGTCTTTT TGTGACACTCTAGGTGTATGACCCCAAGACAAAGAGGTACGACCAACCAT ACGCAACAGGGAACTGTGGTGGGGAGGGCATTTGCGGCACTTGCTTTGTT GAGGTACAGTGGAAAAGGGGGAAAAACTCTCCTGTGTTATAATAGAGGGG GAGTGAGTTGCATTGGGTGCCTAGATTATTTCAATGACTTGAAGAACCCA ATCTGCAAGTTTGGTTGTTGGGGAGAGAACTTACTGGTGGTGCAAGGTCT ACTGCAATTGAGTGAGCCAAAGACTCTTTCGGTTGAAGGGAATGGGGAGC TGGGGGGCGGGAGAGATTGCAAATTGCCTGACCCATATTCATTCCCCCCT TCTTCTCATTGCCCAATCCCTGTATGCCCCGTTACCAGGTTCAACAAGGA GCAAATCTCCTTTCCCCAGCTGATGAGGAGGAGCTCATGCTCATGGCTCA GGGGGTATTGCCGACAAGGTGGCGCCTGTCATGCAAGACGATTGTTGGCA TGAATAACGATTCAGGCACCGTAACTCTCAAGGCTGTGCCACAGGCAGAG TGGAGGGAGGCTCAAAGTCAATGAGCCTCTCTCAGCACAGGACACCAAAC ACTCTGGGTGAATGGGTTGTACCTGTTTGTCACGTTCCGAGGTGCAGTTC CACCACAGAGCTGACTCGGGTATATTCCATAGTTGAAGGGTCCTTTTCTA AGCATTGGGGTAGAATTGGTTGGAGAGATGGTAGGCTATGCCAGAAGATC TGACTATGTCTCTGTTGTTGTCTGCTCCCTGGGATAGTAACTGAACACGA GACTCCCTAATAAGCCCTTGGAGCTCTGCGAAGACCGTACTGAAGTGCAG GTTTTGTGGAGCTGCGGCATCGTATGCATAGTGTTCTGTGTTACGAAGGT TGATTGTAGGTCCCTATTCTGCATGTTGCCCTAGCAATGTCGAGCACAAT GTATTTGCCCTTCACCACTGCAACATGTTCAATCCATTCCTCGATATGAC AGTTCCTATAACTACGATATGAATCCTGGAAATATGCCAATGATGGCCGT GGTCAGATCACTTCTATCTATGAATGTGCCTGTGCATCCTCATGCTCTAT TGTTGGTGTTGCCGATGATCTTGATATGGTGACTGTTTTGGTCGCAAGTT TTTGTAGAGAATCTAGGGCGGGTGTATGATATGCATTGCTGAGATCAGGA TGTCTGCCTCCTTGCATGGGGCAACACATGAGTGGATTCCCAACCCACCC TCCACCATTCACCCTTCATTTCTTTAGAGTTTGTATGCTCCCACTGATTT CTTGACTGGATTCAAGCTTGATGTGACCAGAAACTGAGCCCCTGGCTTGT CTTGAGTCCTATGAAAATCCTTACTGTGGCATTTATTGCTGGATAGATAA GTGTTGCTGTCCTGTAAGGTAGTGCTACCAGGGCTGCCACGAGTGTATGT GTATGGTGGGGTGGGGATTCAAGCCAAGCTTCTTGGGACCGTGTCCGTTT TTCTGGACAAACCAGTTGAGATGGATAGTTGCCCGCGTTAAATAGCGCTT AATTGAACAATGCGGATAACGTGTTGACAGCAGGAAATGTTGCATAGGAA ATGCATCCTGTAGGCACAACGAGAAACATGGGACATCCCATTGGCCTAGT TGTTCCATTTCGTGTGGGGGTCCCTACCCATTTGATTGTCGTACTTTTTT TGTTCAACTTGTTGCAACTCATCCTGATTTCTGTTGTGGCTTCTACAAGA GGAATGCATCCTCAGCTGCCAAATGCTTGCGCAGCAAGTGTGTCTTGTGC TGTGGGAAGAGGAGCGTCTTGCCCTTTTGATTTCTCACCAAGGGTAGTAC TGTGCTCCGTGTGTCCCAAGAAGTTAAGAGTTTCTTCAAAATGACTCTTT GATGCAATAAAGCCTGAAACAAAACCACAAACATTAGTCATTTGAGC
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Coding sequence (CDS) from alignment at C-tenellus_contig9419:781..4477+

>mRNA_C-tenellus_contig9419.2.2 ID=mRNA_C-tenellus_contig9419.2.2|Name=mRNA_C-tenellus_contig9419.2.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=1041bp|location=Sequence derived from alignment at C-tenellus_contig9419:781..4477+ (Choristocarpus tenellus KU2346)
ATGACCCATACCTCTACAGTTCGAAAGTCTCACCAATGTATGGTGTTGTT
GCTCTTGAGCGTATGCCTCTCCACCTGGTCATCAAACGCGTTCGTCACGA
TTCCCAATCACCGTCTAATATTGACTCCAACACTTAGATGGCCTGCAACA
ACATCGGTTGGCACAAAGGTCAGGTCTACTGTAACAAAACCTCTATTACC
GTCGGCAACAGAAGGTGGTATCGGAGAAGAATCGGAAAACAAGGAAGGGT
CGGGTCCCCTGACTCCTGCGGGTCTTACCCTGGAGGGAGTGTACAAACGA
GTCAAAATAGAGGCGCAGGGTTTGGAGGATGGAGCGGTAGCACTAGACAG
CAAGGATGTGGATTATGGGGTGGAGATAGTCAAGGTGAAAATGCCCCGAG
AGCCATCCCTTGGTATTCAGCTTGTGGAAGTGGCGCGAGGGGCTGATGGA
AGAGGTCTTGTCCTTGTCTCAGGCTTAGAACCTGGGGGCCGGGCGGAAGT
GAGCGGGAAGGTGGAAATTGGGGACACCTTGAGCTGGGTTGGAGTGGAGC
CCAATCGCATGATTCGAGTCGAGGCCTTGGATTGGGACCAAACTGTAAAT
GCGCTGAGTCAGTACACTGGAGACAGCGAGATCACCCTGGTCCTGAAGCG
TTTGATCAAGCGAGAGATGCTGGATGTAGTGTTCAAACTTCCAAATGGCG
ATAGGACGGAAGCAATCTTGGCAGGCAGCAACCTTCGGGGAGAAATGATT
CGCTTGGGGGTCCCTGTGTATGACCCCAAGACAAAGAGGTACGACCAACC
ATACGCAACAGGGAACTGTGGTGGGGAGGGCATTTGCGGCACTTGCTTTG
TTGAGGTTCAACAAGGAGCAAATCTCCTTTCCCCAGCTGATGAGGAGGAG
CTCATGCTCATGGCTCAGGGGGTATTGCCGACAAGGTGGCGCCTGTCATG
CAAGACGATTGTTGGCATGAATAACGATTCAGGCACCGTAACTCTCAAGG
CTGTGCCACAGGCAGAGTGGAGGGAGGCTCAAAGTCAATGA
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