mRNA_C-tenellus_contig9405.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9405.2.1
Unique NamemRNA_C-tenellus_contig9405.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9405.2.1 vs. uniprot
Match: A0A6H5L4Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.200e-23
Identity = 56/105 (53.33%), Postives = 75/105 (71.43%), Query Frame = 1 
Query: 1273 QGTLVLERVIAKGVNGVVTRDIKGQGLGSIVSTDGSNLELPMDSRFPQLAAKIKAFVSQSEDEELILGTDMRPAERLAAHCLCLDEGLGHESRGEEPYKRLHIWK 1587
            +GTL +E  +A GV+GVVTRD KG G G I  TDG+NLE+P   +FP++AA+++ F +QSED EL+  + +   ER AAH L   EGLGHESRG+E  + LH+WK
Sbjct:  709 KGTLKVEVPLATGVSGVVTRDAKGGGQGMITITDGNNLEMPAQVKFPKIAAQVREF-AQSEDRELVFPSGLSARERNAAHSLAAGEGLGHESRGDEGNRALHLWK 812
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9405.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4Q3_9PHAE4.200e-2353.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9405contigC-tenellus_contig9405:594..2699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5551.XP_003235353.1
Preferred namePIN4
PFAMsR3H,RRM_1
Model size1602
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000077,GO:0000086,GO:0000278,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005737,GO:0006950,GO:0006974,GO:0006979,GO:0007049,GO:0008150,GO:0009894,GO:0009987,GO:0010468,GO:0010608,GO:0010610,GO:0019219,GO:0019222,GO:0022402,GO:0031323,GO:0031329,GO:0031570,GO:0032991,GO:0033554,GO:0034599,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043487,GO:0043488,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0045786,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0051726,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070887,GO:0071014,GO:0080090,GO:0097159,GO:1901363,GO:1903047,GO:1903311,GO:1990904,GO:2000815
Exons2
Evalue0.000118
EggNOG OGsCOG0724@1|root,KOG0108@2759|Eukaryota,39TBU@33154|Opisthokonta,3NZ7N@4751|Fungi,3QK97@4890|Ascomycota,20FTY@147545|Eurotiomycetes,3B1UB@33183|Onygenales,3FVB0@34384|Arthrodermataceae
DescriptionR3H domain
Cds size207
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790175.3868303-CDS-C-tenellus_contig9405:593..7791680790175.3868303-CDS-C-tenellus_contig9405:593..779Choristocarpus tenellus KU2346CDSC-tenellus_contig9405 594..779 -
1680790175.4011123-CDS-C-tenellus_contig9405:1283..13041680790175.4011123-CDS-C-tenellus_contig9405:1283..1304Choristocarpus tenellus KU2346CDSC-tenellus_contig9405 1284..1304 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790175.4123645-UTR-C-tenellus_contig9405:1304..26991680790175.4123645-UTR-C-tenellus_contig9405:1304..2699Choristocarpus tenellus KU2346UTRC-tenellus_contig9405 1305..2699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9405.2.1prot_C-tenellus_contig9405.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9405 594..1304 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9405.2.1

>prot_C-tenellus_contig9405.2.1 ID=prot_C-tenellus_contig9405.2.1|Name=mRNA_C-tenellus_contig9405.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=69bp
MDSRFPQLAAKIKAFVSQSEDEELILGTDMRPAERLAAHCLCLDEGLGHE
SRGEEPYKRLHIWKVGRR*
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mRNA from alignment at C-tenellus_contig9405:594..2699-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9405.2.1 ID=mRNA_C-tenellus_contig9405.2.1|Name=mRNA_C-tenellus_contig9405.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2106bp|location=Sequence derived from alignment at C-tenellus_contig9405:594..2699- (Choristocarpus tenellus KU2346)
TATATATACATATACATAAATATTTATGTGTGTGTGTTTTTTATTGAATC
GAGTGCATTGTTTTTTTTTTACCACTAGATGAAACTTTTAGTTGTACGGT
ATCCAACTTTTTATTTTTGTGGAGTACATTTTTTTTATGGTAGATTAAAA
ATTCTACTTGTACATGGTTCGACTTTTTAATATAATCAAATATCTTTTTT
TGTTTTAATTGTAGATTTAATATATTTTTTTGTACATGGTTAACTCTTCG
AGTTGAGGCACTGGGTATCATCTCTCTATGTTTGACATCCAATTAATTGC
TTAATATCTGACACCATTGTATTGGCAGAAGTCGTCTATGTTTTCTACTC
CTTGGTTAAGACCGTTATCACCCTCAAACCTCACCTATCCCTTACACCTA
TTCCTAACACCTATCCCTTACACCTATTCCTAACTCCTATCCCTAACACC
TATCCCTTACACCTATTCCTAACACCTATCCCTTACACCTATCACTAACA
CCTATCCCCTGACTCAAAGTATAAATTGGATGTTTTTGTTAAGTGGGAGC
TGTGGTATTCTAGTGTAAAAGAGATTTTTGTGTCTGAAATCCTTTGGTAC
GAGTGAATGACTTCAAGCATGAAATTGAAAGCACCAGGCAGTGATGGTGC
AAGACACGATGGTGTGTAACTGTTGAAACTGTCATATACATTGTCAAAAT
TCTGTTCGCAGGTCTATGTGTTTGGAGGCGTTACTAATGGCATGTCTTCC
AGCTCAAGTCACACCCCTGTTCCCCCCCCCACCCCCCTCTTAATTTTGGT
TGTGCACAATTATTAACCTCTTGGATAATGCCGTGAAAATGAGGTTCTGG
CAGTAGCAGCACATACACTTCATCAGCTCTGTTTGCTCTGGGTCTGTTTT
GGAGATGCATGGTCTTATGAATGAGGACTTTAGGCGGGTTAGGGAGAGGA
GGGGCATTGCAAGGCTCACACTTCTCTGTGACCTCTTCATTTGTCTTTTG
ATGGTGTTTGATGGTGTTTGATGGTGTTTGATGGTGTTTGATGGTGTTTG
ATGGTGGTGTAGAGCTTGATCATTCACACCGTTTGTCACTGTTTTGATTG
CTTCCTGTGCCAAGACTTCACCCTCTGATTGAAATGATTGAAAGGGTGGG
AAGTCCTGTGTATGGGAACAAATGCTCGTTTTTTTTGTGTCAATGTATGA
GTTCGTTTTTTCATTGTTTTTTCATTGCCCAAGCTATTGTAGAAATGTAG
ACTCTGATGCTGTGTTTCTTGACAGGGAACTCTGGTTTTGGAGCGTGTGA
TTGCCAAAGGGGTTAACGGGGTGGTTACTAGGGACATCAAGGGACAAGGG
CTGGGCAGCATTGTTTCCACGGATGGAAGTAACCTTGAATTGCCCATGGA
CTCAAGGTTTCCCCAGGTGTGTCTCCTCAGTTGAAGTATGGTTGTAACGT
TTACGTAACTTGTTTGGTTGAAGCCGGAGCTTATCTCCATTGAATGCATT
GGTATTTTTATGTTGGTACTAACACGGATGGCGACTTCCATCTACAGTGA
TAGTTATGAGTTATCTACAGTGATGGTTACGAGTTATCTACAGTGATGGT
TATGAGTTATCTACAGTGATAGTTGTAAGTTCAAGGATGATGTCACTGTG
CCGTGTTGTTCTAACTTGGACCGTGTGACCCAACCAAGGACAGCATGTTG
TGGTGTTATAGTGTTATAGTGTTGTAGTGGCTTGTTCTCGAACCTTGGAA
TTTCAATTGCTTGGGCCTGACCTTGCCTTTTGCCTCGGACCAGTTTCAGG
TAACATTACATTGTATTTGGGACTGTGTTAGCATTTGGTCTTGTGATGCT
GTAACAGCTGCCCTCCCCCCCCCCCCCCGCCGCCGCCGCCCAATTTACAC
AATCGGGGTGCATACTGCAGCTTGCTGCAAAAATCAAGGCATTTGTGAGT
CAATCTGAGGATGAGGAACTGATTCTGGGTACAGACATGCGTCCAGCGGA
GAGATTGGCTGCTCATTGCCTCTGCTTGGATGAAGGCCTAGGCCATGAGA
GCAGGGGAGAGGAGCCCTACAAGAGACTACACATTTGGAAGGTTGGTAGA
AGATAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9405:594..2699-

>mRNA_C-tenellus_contig9405.2.1 ID=mRNA_C-tenellus_contig9405.2.1|Name=mRNA_C-tenellus_contig9405.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=207bp|location=Sequence derived from alignment at C-tenellus_contig9405:594..2699- (Choristocarpus tenellus KU2346)
ATGGACTCAAGGTTTCCCCAGCTTGCTGCAAAAATCAAGGCATTTGTGAG
TCAATCTGAGGATGAGGAACTGATTCTGGGTACAGACATGCGTCCAGCGG
AGAGATTGGCTGCTCATTGCCTCTGCTTGGATGAAGGCCTAGGCCATGAG
AGCAGGGGAGAGGAGCCCTACAAGAGACTACACATTTGGAAGGTTGGTAG
AAGATAG
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