mRNA_C-tenellus_contig94.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig94.2.1
Unique NamemRNA_C-tenellus_contig94.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.350e-24
Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 VAQVRKMSSMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRA--GPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381
            VA+VR+    PK+  TWTG W VV+    HVY VQNI++G +R++H + L FY ++ LN   +L   F++   Q E +M +++++  A  G    V V W GFEEDE  W+P   I +DAP + +++LR
Sbjct:   23 VARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 151          
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.010e-22
Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 VAQVRKMSSMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRA--GPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381
            VA+VR+    PK+  TWTG W VV+    HVY VQNI++G +R++H + L FY ++ LN   +L   F++   Q E +M +++++  A  G    V V W GFEEDE  W+P   I +DAP + +++LR
Sbjct:  278 VARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 406          
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.250e-22
Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1
Query:    1 VAQVRKMSSMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRA--GPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381
            VA+VR+    PK+  TWTG W VV+    HVY VQNI++G +R++H + L FY ++ LN   +L   F++   Q E +M +++++  A  G    V V W GFEEDE  W+P   I +DAP + +++LR
Sbjct: 1501 VARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 1629          
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.200e-17
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 1
Query:   16 KMSSMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRA--GPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381
            ++ S+P  V    G + +VA E  HVY VQNI+SG +R++H + L FY +  L    EL + F++   Q EF+MAA+VD+S A  GP  +V V W GF+++E  WE    +   AP + + +LR
Sbjct: 1588 RVGSLPDFV---VGDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPGFDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELR 1708          
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: W4FIQ2_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FIQ2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.410e-10
Identity = 36/119 (30.25%), Postives = 58/119 (48.74%), Query Frame = 1
Query:   25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381
            S  K+  TW G   VV   +  ++++QN+++G +RE H+S L FY N+ L+   EL +   +  +            +      EVCV W G    E  WEP   +L+D P  F++ +R
Sbjct:   19 SHSKLSVTWRGPAQVVKTTSDWIFEIQNLVTGVVREAHSSHLKFYANDALDVTEELLRHIAHNADGHVVDQFLDCRYNDRMAAFEVCVRWRGLHAIEDSWEPAANLLEDIPTEFKRYMR 137          
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6A4ZGP7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZGP7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.480e-9
Identity = 35/119 (29.41%), Postives = 59/119 (49.58%), Query Frame = 1
Query:   25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381
            S  K+  TW G   VV   +  ++++QN+++G +RE H+S L FY ++ L+   EL +   +  +            +      EVCV W G +  E  WEP   +L+D P  F++ +R
Sbjct:  358 SHSKLSVTWRGPAQVVKTTSDWIFEIQNLVTGVVREAHSSRLKFYADDALDVTEELLRHIAHNADGHVVDQFLDCRYNDRMAAFEVCVRWRGLQAIEDSWEPAANLLEDIPTEFKRYVR 476          
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6G0XEW4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEW4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.030e-8
Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 1
Query:   25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGP---VCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381
            S  K+  TW G   VV  ++  ++++ N+I+G +RE HAS L FYT+  LN   EL       +N     +  +VD  R  P     EV V+W G +E E  WEP   +L+D PV  ++ ++
Sbjct:  195 SPSKLNVTWRGPAQVVKAKSGWIFEIPNLITGIVREAHASRLKFYTDESLNVDEELLS--HVAHNADGHVIDHLVDC-RFNPKTAAFEVLVSWRGLQEIENSWEPATNLLEDIPVVLKRYVQ 313          
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: W4GBT6_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBT6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.250e-8
Identity = 37/121 (30.58%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGPVC--EVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381
            S  K+  TW G   VV   +  ++++QN+++G +RE H+S L FY ++ L+   EL +    V+N     +   +D      +   EVC+ W G +  E  WEP   +L+D P  F++ +R
Sbjct:   53 SHSKLSVTWRGPAQVVKTTSDWIFEIQNLVTGVVREAHSSRLKFYADDALDVTEELLRHI--VHNADGHVVDQFLDCRYNDRMAAFEVCLRWRGLQAIEDSWEPAANLLEDIPTEFKRCVR 171          
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6G0XU29_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU29_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.740e-8
Identity = 38/119 (31.93%), Postives = 56/119 (47.06%), Query Frame = 1
Query:   25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381
            S  K+  TW G   VV   +  ++++QN+I+G +RE HAS L FY +  LN   EL     +  N                   EV V+W G EE E  WEP   + +D PV  ++ ++
Sbjct:  110 SPSKLNVTWRGPAQVVKATSGWMFEIQNLITGIVREAHASRLKFYADESLNVDEELLSHVAHNANGHVVDHLVDCRFKPKTAAFEVLVSWRGLEEVENSWEPATNLQEDIPVVLKRYVQ 228          
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6G0X9E3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9E3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.700e-8
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 1
Query:   25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGP---VCEVCVNWFGFEEDEMMWEPPPAILKDAPV 360
            S  K+  TW G   VV   +  ++++QN+I+G +RE HAS L FY +  LN   EL       +N     +  +VD  R  P     EV V+W G +E E  W+P   +L+D PV
Sbjct:  718 SPSKLSVTWRGPAQVVKATSGWIFEIQNLITGIVREAHASRLKFYADESLNVDEELLS--HVAHNADGHVVDHLVDC-RFNPKTAAFEVLVSWRGLQEIENSWKPATKLLEDIPV 829          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE1.350e-2440.31Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE1.010e-2240.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE2.250e-2240.31Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE2.200e-1739.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4FIQ2_9STRA2.410e-1030.25Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A6A4ZGP7_9STRA4.480e-929.41Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6G0XEW4_9STRA1.030e-834.43Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4GBT6_9STRA1.250e-830.58Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A6G0XU29_9STRA2.740e-831.93Chromo domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A6G0X9E3_9STRA7.700e-835.65Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig94contigC-tenellus_contig94:9973..10353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size381
Hectar predicted targeting categoryother localisation
Exons1
Cds size249
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790174.7318192-UTR-C-tenellus_contig94:9972..101041680790174.7318192-UTR-C-tenellus_contig94:9972..10104Choristocarpus tenellus KU2346UTRC-tenellus_contig94 9973..10104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790174.744805-CDS-C-tenellus_contig94:10104..103531680790174.744805-CDS-C-tenellus_contig94:10104..10353Choristocarpus tenellus KU2346CDSC-tenellus_contig94 10105..10353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig94.2.1prot_C-tenellus_contig94.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig94 10105..10353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig94.2.1

>prot_C-tenellus_contig94.2.1 ID=prot_C-tenellus_contig94.2.1|Name=mRNA_C-tenellus_contig94.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=83bp
MHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGPVCEV
CVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR
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mRNA from alignment at C-tenellus_contig94:9973..10353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig94.2.1 ID=mRNA_C-tenellus_contig94.2.1|Name=mRNA_C-tenellus_contig94.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=381bp|location=Sequence derived from alignment at C-tenellus_contig94:9973..10353+ (Choristocarpus tenellus KU2346)
GTTGCCCAGGTACGTAAGATGAGTAGCATGCCAAAGGTGGTGGGCACTTG GACCGGGCTATGGTGAGTGGTTGCTAAAGAGACCCCTCATGTTTACCAGG TCCAGAATATCATTTCTGGAGCAATTAGGGAGATGCATGCATCCTGCCTG TGTTTTTATACCAACAATGTCTTGAATGATATCATGGAATTGAACCAAAA ATTTGAATATGTTAATAACCAGAGGGAGTTCAAAATGGCTGCCATGGTGG ATTTATCTAGAGCAGGACCTGTTTGTGAGGTGTGTGTAAACTGGTTTGGC TTTGAAGAGGATGAGATGATGTGGGAACCTCCACCTGCTATTCTAAAGGA TGCTCCTGTGTACTTTGAGAAGCAATTGAGG
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Coding sequence (CDS) from alignment at C-tenellus_contig94:9973..10353+

>mRNA_C-tenellus_contig94.2.1 ID=mRNA_C-tenellus_contig94.2.1|Name=mRNA_C-tenellus_contig94.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=249bp|location=Sequence derived from alignment at C-tenellus_contig94:9973..10353+ (Choristocarpus tenellus KU2346)
ATGCATGCATCCTGCCTGTGTTTTTATACCAACAATGTCTTGAATGATAT
CATGGAATTGAACCAAAAATTTGAATATGTTAATAACCAGAGGGAGTTCA
AAATGGCTGCCATGGTGGATTTATCTAGAGCAGGACCTGTTTGTGAGGTG
TGTGTAAACTGGTTTGGCTTTGAAGAGGATGAGATGATGTGGGAACCTCC
ACCTGCTATTCTAAAGGATGCTCCTGTGTACTTTGAGAAGCAATTGAGG
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