mRNA_C-tenellus_contig94.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.350e-24 Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1 Query: 1 VAQVRKMSSMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRA--GPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381 VA+VR+ PK+ TWTG W VV+ HVY VQNI++G +R++H + L FY ++ LN +L F++ Q E +M +++++ A G V V W GFEEDE W+P I +DAP + +++LR Sbjct: 23 VARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 151
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.010e-22 Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1 Query: 1 VAQVRKMSSMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRA--GPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381 VA+VR+ PK+ TWTG W VV+ HVY VQNI++G +R++H + L FY ++ LN +L F++ Q E +M +++++ A G V V W GFEEDE W+P I +DAP + +++LR Sbjct: 278 VARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 406
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 101 bits (251), Expect = 2.250e-22 Identity = 52/129 (40.31%), Postives = 79/129 (61.24%), Query Frame = 1 Query: 1 VAQVRKMSSMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRA--GPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381 VA+VR+ PK+ TWTG W VV+ HVY VQNI++G +R++H + L FY ++ LN +L F++ Q E +M +++++ A G V V W GFEEDE W+P I +DAP + +++LR Sbjct: 1501 VARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELR 1629
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 2.200e-17 Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 1 Query: 16 KMSSMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRA--GPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381 ++ S+P V G + +VA E HVY VQNI+SG +R++H + L FY + L EL + F++ Q EF+MAA+VD+S A GP +V V W GF+++E WE + AP + + +LR Sbjct: 1588 RVGSLPDFV---VGDYVIVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPGFDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELR 1708
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: W4FIQ2_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FIQ2_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.410e-10 Identity = 36/119 (30.25%), Postives = 58/119 (48.74%), Query Frame = 1 Query: 25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381 S K+ TW G VV + ++++QN+++G +RE H+S L FY N+ L+ EL + + + + EVCV W G E WEP +L+D P F++ +R Sbjct: 19 SHSKLSVTWRGPAQVVKTTSDWIFEIQNLVTGVVREAHSSHLKFYANDALDVTEELLRHIAHNADGHVVDQFLDCRYNDRMAAFEVCVRWRGLHAIEDSWEPAANLLEDIPTEFKRYMR 137
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6A4ZGP7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZGP7_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 4.480e-9 Identity = 35/119 (29.41%), Postives = 59/119 (49.58%), Query Frame = 1 Query: 25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381 S K+ TW G VV + ++++QN+++G +RE H+S L FY ++ L+ EL + + + + EVCV W G + E WEP +L+D P F++ +R Sbjct: 358 SHSKLSVTWRGPAQVVKTTSDWIFEIQNLVTGVVREAHSSRLKFYADDALDVTEELLRHIAHNADGHVVDQFLDCRYNDRMAAFEVCVRWRGLQAIEDSWEPAANLLEDIPTEFKRYVR 476
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6G0XEW4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEW4_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.030e-8 Identity = 42/122 (34.43%), Postives = 64/122 (52.46%), Query Frame = 1 Query: 25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGP---VCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381 S K+ TW G VV ++ ++++ N+I+G +RE HAS L FYT+ LN EL +N + +VD R P EV V+W G +E E WEP +L+D PV ++ ++ Sbjct: 195 SPSKLNVTWRGPAQVVKAKSGWIFEIPNLITGIVREAHASRLKFYTDESLNVDEELLS--HVAHNADGHVIDHLVDC-RFNPKTAAFEVLVSWRGLQEIENSWEPATNLLEDIPVVLKRYVQ 313
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: W4GBT6_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBT6_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 1.250e-8 Identity = 37/121 (30.58%), Postives = 63/121 (52.07%), Query Frame = 1 Query: 25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGPVC--EVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381 S K+ TW G VV + ++++QN+++G +RE H+S L FY ++ L+ EL + V+N + +D + EVC+ W G + E WEP +L+D P F++ +R Sbjct: 53 SHSKLSVTWRGPAQVVKTTSDWIFEIQNLVTGVVREAHSSRLKFYADDALDVTEELLRHI--VHNADGHVVDQFLDCRYNDRMAAFEVCLRWRGLQAIEDSWEPAANLLEDIPTEFKRCVR 171
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6G0XU29_9STRA (Chromo domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XU29_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 2.740e-8 Identity = 38/119 (31.93%), Postives = 56/119 (47.06%), Query Frame = 1 Query: 25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGPVCEVCVNWFGFEEDEMMWEPPPAILKDAPVYFEKQLR 381 S K+ TW G VV + ++++QN+I+G +RE HAS L FY + LN EL + N EV V+W G EE E WEP + +D PV ++ ++ Sbjct: 110 SPSKLNVTWRGPAQVVKATSGWMFEIQNLITGIVREAHASRLKFYADESLNVDEELLSHVAHNANGHVVDHLVDCRFKPKTAAFEVLVSWRGLEEVENSWEPATNLQEDIPVVLKRYVQ 228
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Match: A0A6G0X9E3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X9E3_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 7.700e-8 Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 1 Query: 25 SMPKVVGTWTGLW*VVAKETPHVYQVQNIISGAIREMHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGP---VCEVCVNWFGFEEDEMMWEPPPAILKDAPV 360 S K+ TW G VV + ++++QN+I+G +RE HAS L FY + LN EL +N + +VD R P EV V+W G +E E W+P +L+D PV Sbjct: 718 SPSKLSVTWRGPAQVVKATSGWIFEIQNLITGIVREAHASRLKFYADESLNVDEELLS--HVAHNADGHVVDHLVDC-RFNPKTAAFEVLVSWRGLQEIENSWKPATKLLEDIPV 829 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig94.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig94.2.1 >prot_C-tenellus_contig94.2.1 ID=prot_C-tenellus_contig94.2.1|Name=mRNA_C-tenellus_contig94.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=83bp MHASCLCFYTNNVLNDIMELNQKFEYVNNQREFKMAAMVDLSRAGPVCEVback to top mRNA from alignment at C-tenellus_contig94:9973..10353+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig94.2.1 ID=mRNA_C-tenellus_contig94.2.1|Name=mRNA_C-tenellus_contig94.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=381bp|location=Sequence derived from alignment at C-tenellus_contig94:9973..10353+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig94:9973..10353+ >mRNA_C-tenellus_contig94.2.1 ID=mRNA_C-tenellus_contig94.2.1|Name=mRNA_C-tenellus_contig94.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=249bp|location=Sequence derived from alignment at C-tenellus_contig94:9973..10353+ (Choristocarpus tenellus KU2346)back to top |