mRNA_C-tenellus_contig9384.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9384.3.1
Unique NamemRNA_C-tenellus_contig9384.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9384.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9384contigC-tenellus_contig9384:1346..2549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size558
Hectar predicted targeting categoryother localisation
Exons2
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790173.8522916-UTR-C-tenellus_contig9384:1345..13981680790173.8522916-UTR-C-tenellus_contig9384:1345..1398Choristocarpus tenellus KU2346UTRC-tenellus_contig9384 1346..1398 +
1680790173.879357-UTR-C-tenellus_contig9384:1734..18191680790173.879357-UTR-C-tenellus_contig9384:1734..1819Choristocarpus tenellus KU2346UTRC-tenellus_contig9384 1735..1819 +
1680790173.8936749-UTR-C-tenellus_contig9384:2465..25491680790173.8936749-UTR-C-tenellus_contig9384:2465..2549Choristocarpus tenellus KU2346UTRC-tenellus_contig9384 2466..2549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790173.866439-CDS-C-tenellus_contig9384:1398..17341680790173.866439-CDS-C-tenellus_contig9384:1398..1734Choristocarpus tenellus KU2346CDSC-tenellus_contig9384 1399..1734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9384.3.1prot_C-tenellus_contig9384.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9384 1399..1734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9384.3.1

>prot_C-tenellus_contig9384.3.1 ID=prot_C-tenellus_contig9384.3.1|Name=mRNA_C-tenellus_contig9384.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=112bp
MPKEPLQCPQVSYANEVKQQTQCVPSIGPCSLVRVWLITLDNVEVVHVLG
LVNMLDRTVTIRSAELTTSALMLSMMLKNSLFHCKCISNENHVQYSRNST
NLETPVVIPSC*
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mRNA from alignment at C-tenellus_contig9384:1346..2549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9384.3.1 ID=mRNA_C-tenellus_contig9384.3.1|Name=mRNA_C-tenellus_contig9384.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1204bp|location=Sequence derived from alignment at C-tenellus_contig9384:1346..2549+ (Choristocarpus tenellus KU2346)
CAAAGAGATGACTCGCCATTCCGGAAGGAACAAGAGGTTTATGACATACA
GGCATGCCCAAGGAACCTCTACAGTGCCCACAGGTGAGTTATGCAAATGA
GGTCAAACAACAAACACAGTGTGTTCCTTCAATTGGACCGTGTTCATTGG
TGAGGGTCTGGCTCATAACCCTGGACAATGTAGAGGTTGTGCACGTGTTA
GGCCTGGTGAATATGCTTGATCGTACTGTCACGATAAGGTCGGCAGAGCT
CACCACAAGTGCACTCATGTTATCGATGATGCTCAAGAACAGCCTCTTCC
ACTGTAAGTGTATTAGCAACGAGAACCATGTGCAATATTCGCGCAATTCT
ACTAATTTAGAGACACCTGTCGTCATCCCTTCTTGTTAGGCCGAGATGGA
CTCTGCTCACCACATGTCTACTGACTCTTCAACCAGTGTGATTTTCAGCC
CAAGACGGTTCAGCTGGCAGATATGTATGTACCCTCCTCCCCCTTCTCCC
CTAACGGTATGAGATATAAGACAATGTATGGAGGCATCACATGTAGGTGA
GGCCTTTGTACATAATACACACATGTGTGTATACAAGACATTACTCCATA
GATCCAGGAGGGAAGGGGTATATCCCTCTTTCTCACAATTCCAACCTGTT
GCCAAGACACTCCCTGGTTGCTGCTTCCTGTTGTTGACCCCAGGCAGGTT
ATGGTGTGCCCTCCCATTCACTTATAGAAAGGATTATATTTGCTAGTTGC
TCGTTGTCCTCTCTGCCTATGTCCAGACTGTTCAATACCACCCTTGCTAG
GCCTATGTCTGTGACCATTCCCTCTTCACCTCCAATCATAGCCCTGCCCC
AGGCAATTCCATCTTACCTTCCCACCATCAAGTCATCCAGATTATACATT
CACATCTGCCCTGAGGAATTGACCTATTGGGTCCGACCCAGTCCCCACTC
CATACCGACACTGAACTGTCGTGGTGCCAAGGTGCACACCATCTCCAATA
CACGCTTTTCCCAACAAGTGGGGACAGAGTTATGTACCTATACACACCCT
TCCTTGCACAAGCATCATGCATTTTATGCAGCATCAACAGCATCTGGAAA
AATATACTGTCCAATACCAGGGGAAGATAAACTTTGTCTATGGGAGGTCA
GACTGGTGGAGCTGAAGGCCCTTGAGCCAAGATCAGGTTACAGGGCGAGG
TGAC
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Coding sequence (CDS) from alignment at C-tenellus_contig9384:1346..2549+

>mRNA_C-tenellus_contig9384.3.1 ID=mRNA_C-tenellus_contig9384.3.1|Name=mRNA_C-tenellus_contig9384.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=336bp|location=Sequence derived from alignment at C-tenellus_contig9384:1346..2549+ (Choristocarpus tenellus KU2346)
ATGCCCAAGGAACCTCTACAGTGCCCACAGGTGAGTTATGCAAATGAGGT
CAAACAACAAACACAGTGTGTTCCTTCAATTGGACCGTGTTCATTGGTGA
GGGTCTGGCTCATAACCCTGGACAATGTAGAGGTTGTGCACGTGTTAGGC
CTGGTGAATATGCTTGATCGTACTGTCACGATAAGGTCGGCAGAGCTCAC
CACAAGTGCACTCATGTTATCGATGATGCTCAAGAACAGCCTCTTCCACT
GTAAGTGTATTAGCAACGAGAACCATGTGCAATATTCGCGCAATTCTACT
AATTTAGAGACACCTGTCGTCATCCCTTCTTGTTAG
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