mRNA_C-tenellus_contig9380.6.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9380.6.2
Unique NamemRNA_C-tenellus_contig9380.6.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9380.6.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9380contigC-tenellus_contig9380:4303..5166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size266
Hectar predicted targeting categoryother localisation
Exons3
Cds size213
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790173.5339074-UTR-C-tenellus_contig9380:4302..43361680790173.5339074-UTR-C-tenellus_contig9380:4302..4336Choristocarpus tenellus KU2346UTRC-tenellus_contig9380 4303..4336 -
1680790173.5826778-UTR-C-tenellus_contig9380:5147..51661680790173.5826778-UTR-C-tenellus_contig9380:5147..5166Choristocarpus tenellus KU2346UTRC-tenellus_contig9380 5148..5166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790173.546746-CDS-C-tenellus_contig9380:4336..43811680790173.546746-CDS-C-tenellus_contig9380:4336..4381Choristocarpus tenellus KU2346CDSC-tenellus_contig9380 4337..4381 -
1680790173.5568032-CDS-C-tenellus_contig9380:4776..48791680790173.5568032-CDS-C-tenellus_contig9380:4776..4879Choristocarpus tenellus KU2346CDSC-tenellus_contig9380 4777..4879 -
1680790173.571518-CDS-C-tenellus_contig9380:5082..51471680790173.571518-CDS-C-tenellus_contig9380:5082..5147Choristocarpus tenellus KU2346CDSC-tenellus_contig9380 5083..5147 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9380.6.2prot_C-tenellus_contig9380.6.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9380 4337..5147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9380.6.2

>prot_C-tenellus_contig9380.6.2 ID=prot_C-tenellus_contig9380.6.2|Name=mRNA_C-tenellus_contig9380.6.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=71bp
MLDGLRSRVLMPLHRLYLKQTSILSNKDSLLCTKGGRSDAFPKWCDIYLA
SSSCYQVPLICRAFVCDSFS*
back to top

mRNA from alignment at C-tenellus_contig9380:4303..5166-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9380.6.2 ID=mRNA_C-tenellus_contig9380.6.2|Name=mRNA_C-tenellus_contig9380.6.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=864bp|location=Sequence derived from alignment at C-tenellus_contig9380:4303..5166- (Choristocarpus tenellus KU2346)
TAAGCATGTGTGGTTCGAGATGCTAGATGGATTGCGGAGTAGAGTTCTGA
TGCCATTGCATCGACTGTACTTGAAGCAAACCAGGTGACTACAGACGCTG
TGAGACCACCATCACTAAACAACGAGTTGACGTAAAGATTAAATACTACT
ATTATTGTATGTATTTTACAAAGAATGGTTAGATACGACATAGAGCTAGT
TAGGTCTATAGAATTACAAAATCATTCCACCTTTGGTGACCTCGATGAAG
ACAATGATCTCCTGTAGTCTTGTGGCATTCTCTCCAGTATCTTGTCGAAT
AAGGATTCCCTTCTCTGCACTAAGGGTGGTAGGAGTGACGCCTTTCCTAA
GTGGTGTGACATCTACCTCGCCAGCTCCAGCTGCTACCAGGTGAGCAGCC
CAACACTGCGACATTACACGCTACTTTCACCCCCAAAGAAGAGCACATCG
ATGTTACTCTATTCAATCAATACCATGGTCGCTGCAATAGGCAGAACTCA
ACCTTCAGCAAGATTTGGGGCTAGTCTATGCTCCAAAATAGGTCTCAAAT
ATTCAACAACGTACAAGTACCCGAAGTCTACATCCTTTCTCCAGCCTCTG
GACATTTTACCCTCGAAACTGGTGACCTGTCAATGCCAACACTCGTGACA
AGTGCTTCTCTTTCTACCCAACCATGAACTTGTTAACCGCGTGTACAGCA
TAGTGGGCGTATCATGACACATAATGCATCCAGTCTCTTCAATGAGCCCC
TCCTTTGCCCCACTGGTTGTACCTCCAAAATGAAGGTACCACTCATCTGT
CGCGCCTTTGTCTGCGACAGTTTCAGTTGAGGAATTTCATACCCCCATAA
GTGCGGTTCTCGAA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9380:4303..5166-

>mRNA_C-tenellus_contig9380.6.2 ID=mRNA_C-tenellus_contig9380.6.2|Name=mRNA_C-tenellus_contig9380.6.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=213bp|location=Sequence derived from alignment at C-tenellus_contig9380:4303..5166- (Choristocarpus tenellus KU2346)
ATGCTAGATGGATTGCGGAGTAGAGTTCTGATGCCATTGCATCGACTGTA
CTTGAAGCAAACCAGTATCTTGTCGAATAAGGATTCCCTTCTCTGCACTA
AGGGTGGTAGGAGTGACGCCTTTCCTAAGTGGTGTGACATCTACCTCGCC
AGCTCCAGCTGCTACCAGGTACCACTCATCTGTCGCGCCTTTGTCTGCGA
CAGTTTCAGTTGA
back to top