mRNA_C-tenellus_contig9372.1.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Match: D7FWB5_ECTSI (Amino acid transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB5_ECTSI) HSP 1 Score: 169 bits (427), Expect = 1.090e-40 Identity = 82/146 (56.16%), Postives = 109/146 (74.66%), Query Frame = 3 Query: 831 VAYFIVLFPAIDVTSVYPLNVMVLASNMMAMVYNDRVDKAESDGVIVKTFRIACAAPPILCALLFRDLTRIVDYAGGMALIVALVIPGYLNHISQVMCEERFGTSQTPYSGRFSSSKVVLFTVMALGAVIFGTLVVSDIVNIVRGD 1268 +AYF+VLFPA+DVTSVYPLNVMV+A+NMMA VYND VD AE+D VIV TFRI CA PP+LCALL++D IV YAG + +++A V P Y+N +S+ MCEERFG S+TP++G +SS L+ + G ++F L+ DI I+ + Sbjct: 418 MAYFVVLFPAMDVTSVYPLNVMVVANNMMAAVYNDHVDNAENDSVIVTTFRILCAVPPLLCALLWKDFAAIVGYAGCLTVMIAFVFPAYVNLLSKRMCEERFGASKTPFTGAITSSTPALYACIGFGLLLFVCLIGDDIATILSSE 563
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Match: A0A6H5JRD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD8_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.860e-27 Identity = 69/146 (47.26%), Postives = 95/146 (65.07%), Query Frame = 3 Query: 831 VAYFIVLFPAIDVTSVYPLNVMVLASNMMAMVYNDRVDKAESDGVIVKTFRIACAAPPILCALLFRDLTRIVDYAGGMALIVALVIPGYLNHISQVMCEERFGTSQTPYSGRFSSSKVVLFTVMALGAVIFGTLVVSDIVNIVRGD 1268 +AYF+VLFPA+DVTSVYPLNVMV+A+NMMA VYND VD AE+D VIV TFR D+ +D G + +++A V P Y+N +S+ MCEERFG S+TP++G +SS L+ + G ++F L+ DI I+ + Sbjct: 300 MAYFVVLFPAMDVTSVYPLNVMVVANNMMAAVYNDHVDNAENDSVIVTTFRGEA------------DVVPFID--GCLTVMIAFVFPAYVNLLSKRMCEERFGASKTPFTGAITSSTPALYACIGFGLLLFVCLIGDDIATILSSE 431
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Match: A0A836CJG5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG5_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.160e-21 Identity = 65/134 (48.51%), Postives = 76/134 (56.72%), Query Frame = 3 Query: 657 SCNVNWETFGLDVISTEDLDTNDHGIPMPDSVSASGTAEDEGLNSEDLMRRSNVLMAFVAYFIVLFPAIDVTSVYPLNVMVLASNMMAMVYNDRVDKAESDGVIVKTFRIACAAPPILCALLFRDLTRIVDYAG 1058 SCNVNWE FG T G+ +L V +F+VLFPA+DV SVYPLNVMVLA+N+MA VY+DRVDKAE D VIV FR+ CA PPIL A+ LT+IVDYAG Sbjct: 423 SCNVNWEGFGA---------TATTGV-------------------------WRLLSQLVGFFVVLFPALDVLSVYPLNVMVLANNLMAAVYHDRVDKAEQDRVIVAVFRLGCAVPPILAAVALNSLTQIVDYAG 522
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Match: A0A7S3Y2P6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2P6_HETAK) HSP 1 Score: 100 bits (248), Expect = 8.850e-21 Identity = 57/131 (43.51%), Postives = 85/131 (64.89%), Query Frame = 3 Query: 840 FIVLFPAIDVTSVYPLNVMVLASNMMAMVYNDRVDKAESDGVIVKTFRIACAAPPILCALLF-RDLTRIVDYAGGMALIVALVIPGYLNHISQVMCEERFGTSQ--TPYSGRFSSSKVVLFTVMALGAVIF 1223 F++LFPA+DV ++PLN + A N+MA Y+DR+DKAESD IV+ FR+ + PIL AL +L ++ YAG A+++ ++IP +LN SQ +E G S TP+SG S VL ++M +GA++F Sbjct: 10 FVLLFPALDVVGIFPLNAIAAAQNLMAATYHDRMDKAESDKFIVRFFRLVTSLTPILLALFVGSNLDTVLCYAGTCAVLICMIIPPFLNLKSQKYVKEHLGFSNADTPFSGPMSKP-AVLKSLMGVGALLF 139
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Match: A0A7S3UU28_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU28_HETAK) HSP 1 Score: 101 bits (251), Expect = 1.690e-20 Identity = 59/151 (39.07%), Postives = 96/151 (63.58%), Query Frame = 3 Query: 795 DLMRRSNVLMAFVAYFIVLFPAIDVTSVYPLNVMVLASNMMAMVYNDRVDKAESDGVIVKTFRIACAAPPILCALLFRD-LTRIVDYAGGMALIVALVIPGYLNHISQ--VMCEERFGTSQTPYSGRFSSSKVVLFTVMALGAVIFGTLVV 1238 +++ + L+ A F++LFPA+D SV+ LN + +A +MA +Y+DR+DKAE D +++ FR+ CA PP++C+ D L ++ AG +A+ +++VIP YLN ISQ V+ + F +++T YS + S VL V GAV+F L+V Sbjct: 59 NILTTNFTLVKPAALFVLLFPAMDAISVFSLNAVNMAGKLMAGLYHDRMDKAEKDKFLLRFFRLTCAIPPLICSFFVGDNLDKVYACAGSVAIPISMVIPAYLNIISQQKVVSDLGFRSARTRYSD-WRSRPAVLAAVAGAGAVLFAVLLV 208
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Match: A0A7S2UWS4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWS4_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 9.660e-17 Identity = 65/200 (32.50%), Postives = 103/200 (51.50%), Query Frame = 3 Query: 654 ASCNVNWETFGLDVISTEDLDTNDHGIPMPDSVSASGTAEDEGLNSEDLMRRSNVLMAFVAYFIVLFPAIDVTSVYPLNVMVLASNMMAMVYNDRVDKAESDGVIVKTFRIACAAPPILCALLFRDLTRIVDYAGGMALIVALVIPGYLNHISQVMCEERFG--TSQTPYSGRFSSSKVVLFTVMALGAVIFGTLVVSDI 1247 AS NVNW+ F T EG+ E+ + ++ +++FP IDV S +PLN+ LA+N+MA VY+DRVD+AE D + K FR AA P++ A L L I+DY+G + +++A+VIP YL+++S+ +E + T Y+ FS +L V LG +F ++++I Sbjct: 261 ASSNVNWQRF---------------------------TGGGEGVTIEN----RPIWATLISDIVLIFPVIDVMSAFPLNIHNLATNLMAAVYHDRVDRAERDKTVRKFFRGVSAAVPLVVASLITKLDTILDYSGTVGILLAMVIPPYLSYVSERGTKELLDLRSVNTAYTTIFSRPPFLL-VVAVLGFTLFAAAIINNI 428
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Match: A0A7S3P2Z5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P2Z5_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 9.290e-12 Identity = 52/173 (30.06%), Postives = 83/173 (47.98%), Query Frame = 3 Query: 729 GIPMPDSVSASGTAEDEGLNSEDLMRRSNVLMAFVAYFIVLFPAIDVTSVYPLNVMVLASNMMAMVYNDRVDKAESDGVIVKT-FRIACAAPPILCALLFRDLTRIVDYAGGMALIVALVIPGYLNHISQVMCEERF---GTSQTPYSGRFSSSKVVLFTVMALGAVIFGTLV 1235 G V S +G S + + L+ A++I+LFPA+DV S +PLN + L +NM Y DRV + E K FR+ + PP++ AL R+L I DY G I+ IP L H S+++ + T T Y+ R + +V + + + V+ +L+ Sbjct: 409 GASFGKGVEESSNLNWKGFGSGNEDEDRSWLLELAAFYIILFPALDVLSAFPLNAITLGNNMFGAWYGDRVHEVEHTNRRAKICFRLLASVPPVIGALFVRELGEITDYVGTTGFIIGFSIPALLFHQSKMLAKRTNYDPTTYYTSYASRGPLASIVFWFGLIMVVVVLSSLI 581
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Match: A0A448ZGQ9_9STRA (Aa_trans domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGQ9_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.320e-11 Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = 3 Query: 831 VAYFIVLFPAIDVTSVYPLNVMVLASNMMAMVYNDRVDKAESDGVIVKTFRIACAAPPILCALLFRDLTRIVDYAGGMALIVALVIPGYLNHISQVMCEERFGTSQTPYSGRFSSSKVVLF 1193 V+ +I+LFPAIDV S YPLN + L +N++ VY R+ + E + FR + PPIL +L R+L I DY G ++ + P L S+ + E R + T YSG SS + F Sbjct: 474 VSMYIMLFPAIDVVSAYPLNAITLGNNLLGAVYGKRIHEVEGQRWLRTGFRCLASIPPILFGILVRNLGVITDYTGTTGFLIGISFPAILYVSSRRIAERRQFAADTFYSGYGSSISIARF 594
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Match: A0A1E7FED5_9STRA (Aa_trans domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FED5_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.340e-11 Identity = 47/142 (33.10%), Postives = 78/142 (54.93%), Query Frame = 3 Query: 831 VAYFIVLFPAIDVTSVYPLNVMVLASNMMAMVYNDRVDKAESDGVIVKTFRIACAAPPILCALLFRDLTRIVDYAGGMALIVALVIPGYLNHISQVMCEERFGTSQTPYSGRFSSSKVV-----LFTVMALGAVIFGTLVVS 1241 V+ +I+LFPAIDV S YPLN + L +N+ Y +R+ + E++ + FR+ + PPI+ ++ R+L I DY G +V L P L S+ + + R T Y+ SS+ + + T+M LG ++ TL++S Sbjct: 487 VSMYIILFPAIDVVSAYPLNAITLGNNLFGAAYGNRIHEVENNRWLKSGFRLLSSIPPIILGIMVRELGVITDYTGTTGFLVGLSFPAILYVSSRAIAKRRHFALDTYYTNYGSSTVIANLILWVGTLMVLGVLV--TLIIS 626
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Match: A0A7S1BWK7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BWK7_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 4.600e-11 Identity = 63/201 (31.34%), Postives = 90/201 (44.78%), Query Frame = 3 Query: 621 LVGWLID*QIVASCNVNWETFGLDVISTEDLDTNDHGIPMPDSVSASGTAEDEGLNSEDLMRRSNVLMAFVAYFIVLFPAIDVTSVYPLNVMVLASNMMAMVYNDRVDKAESDGVIVKTFRIACAAPPILCALLFRDLTRIVDYAGGMALIVALVIPGYLNHISQVMCEERFGT-SQTPYSGRFSSSKVVLFTVMALGAVI 1220 +VG+ I SCN+NW + HG A GT + D+ + L A+V VLFPA+DV S +PLN + L +N++ + +++ +AE FR PPI ALL RDL I D+ G +A P L+ S+ M EE F + T Y FS+ + L TV G V+ Sbjct: 268 VVGYYFGDDIQTSCNINWGGY--------------HGGTGTLVQDADGTQ-----HRTDVALWAKALSAYV----VLFPALDVVSAFPLNAITLGNNLLGAHFGEKIHEAEKSWHNRTRFRCYACLPPIFGALLVRDLGTITDFTGVTGFAIAFSFPALLSIYSKRMVEEHFPRLTTTGYHNGFSNEQWAL-TVFFFGVVL 444 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9372.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9372.1.2 >prot_C-tenellus_contig9372.1.2 ID=prot_C-tenellus_contig9372.1.2|Name=mRNA_C-tenellus_contig9372.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=178bp MPDSVSASGTAEDEGLNSEDLMRRSNVLMAFVAYFIVLFPAIDVTSVYPLback to top mRNA from alignment at C-tenellus_contig9372:217..4643+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9372.1.2 ID=mRNA_C-tenellus_contig9372.1.2|Name=mRNA_C-tenellus_contig9372.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4427bp|location=Sequence derived from alignment at C-tenellus_contig9372:217..4643+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9372:217..4643+ >mRNA_C-tenellus_contig9372.1.2 ID=mRNA_C-tenellus_contig9372.1.2|Name=mRNA_C-tenellus_contig9372.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=534bp|location=Sequence derived from alignment at C-tenellus_contig9372:217..4643+ (Choristocarpus tenellus KU2346)back to top |