mRNA_C-tenellus_contig9355.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9355.2.1
Unique NamemRNA_C-tenellus_contig9355.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9355.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9355contigC-tenellus_contig9355:1342..3406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1510
Hectar predicted targeting categoryother localisation
Exons2
Cds size1047
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.024367-UTR-C-tenellus_contig9355:1341..15351680790172.024367-UTR-C-tenellus_contig9355:1341..1535Choristocarpus tenellus KU2346UTRC-tenellus_contig9355 1342..1535 -
1680790172.0550592-UTR-C-tenellus_contig9355:3137..34061680790172.0550592-UTR-C-tenellus_contig9355:3137..3406Choristocarpus tenellus KU2346UTRC-tenellus_contig9355 3138..3406 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790172.0341895-CDS-C-tenellus_contig9355:1535..17131680790172.0341895-CDS-C-tenellus_contig9355:1535..1713Choristocarpus tenellus KU2346CDSC-tenellus_contig9355 1536..1713 -
1680790172.0450222-CDS-C-tenellus_contig9355:2268..31371680790172.0450222-CDS-C-tenellus_contig9355:2268..3137Choristocarpus tenellus KU2346CDSC-tenellus_contig9355 2269..3137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9355.2.1prot_C-tenellus_contig9355.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9355 1536..3137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9355.2.1

>prot_C-tenellus_contig9355.2.1 ID=prot_C-tenellus_contig9355.2.1|Name=mRNA_C-tenellus_contig9355.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=349bp
MLHGLNSDSGPGNAPRRVKMNTFMNRKSNWAEQGEGWSSVMNIGNAEAAC
ISCFKGSGGLLDPMYCMTLAGFSGNSNSILLIGRCQPRWLPCAHARVNSL
LDGVPFGSPEQCHMTDNADMSKVWEDGVTAQTNVARLLAESNIHQSEEFD
EERRLWCEKFITDVHRGHFPTDLMLSGGGKGNGNIGGNGQIGNKGAKNQP
PQWNKPMQQWVTQLCDGHETEVQPAAHEDGNERGEDIETGLGGHSQGHTG
NGLVREVSRDEAAKGILREHFQMNRPLIIRGAMSTAFQSRWDPESLGVEY
ADQKVTALVYDKGQDQQQPVFTVNLDFADFVHFSQNTSQVKHVGKDLG*
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mRNA from alignment at C-tenellus_contig9355:1342..3406-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9355.2.1 ID=mRNA_C-tenellus_contig9355.2.1|Name=mRNA_C-tenellus_contig9355.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2065bp|location=Sequence derived from alignment at C-tenellus_contig9355:1342..3406- (Choristocarpus tenellus KU2346)
CTAGGCATGATGTGGGTGTTGAGGTGAGCACATACCTGGAGAAAACTGCA
GGGACTGGGAGAGGGGTGTCTACGGATCCAGGAAGTAATAAAGATGCCAC
TTCTAGGCAGTCGTTAGAGGCTGAGGGCGAGGAAGATGTGCTAGGAACCA
CGCCTTTAACTTTCAGTTGGGATTACAGGCAGGAGCCGGAAGATGACCTC
AAACAGAGGGGAAAGTCAGAAGCGGGAGATGTTGAAAGATTGGAAAGAAA
TGCAACTGGGGAGAGAGCCATGCTGCATGGATTGAATTCAGATTCAGGAC
CTGGCAATGCCCCAAGGAGGGTGAAGATGAACACTTTCATGAATAGGAAG
TCAAACTGGGCTGAACAGGGCGAGGGTTGGTCATCAGTGATGAACATTGG
CAATGCTGAGGCAGCATGCATCTCCTGCTTCAAGGGGAGTGGGGGGCTTC
TGGACCCCATGTACTGCATGACCCTAGCAGGCTTTTCAGGCAATAGCAAT
AGTATCCTGCTCATAGGACGGTGTCAACCTCGGTGGCTACCCTGTGCCCA
TGCCCGTGTGAATTCGCTCTTGGATGGCGTCCCTTTTGGTAGCCCTGAGC
AGTGCCACATGACAGACAATGCAGATATGAGCAAGGTGTGGGAGGATGGG
GTAACAGCTCAGACAAATGTTGCTCGACTTTTGGCAGAGTCCAACATTCA
CCAGTCGGAGGAGTTTGATGAAGAGAGGAGGCTTTGGTGCGAGAAGTTCA
TCACTGATGTCCACCGAGGTCATTTTCCCACCGATCTTATGCTCAGTGGA
GGTGGAAAAGGCAATGGAAATATAGGTGGAAATGGTCAAATTGGCAACAA
GGGCGCTAAGAATCAACCACCACAATGGAACAAGCCAATGCAACAATGGG
TAACTCAACTTTGTGATGGTCATGAAACCGAGGTTCAACCAGCAGCACAT
GAAGATGGGAATGAGAGAGGGGAGGACATAGAGACAGGATTAGGGGGACA
TAGTCAAGGACATACAGGGAACGGACTTGTACGGGAGGTATCCCGGGATG
AGGCAGCAAAAGGGATCTTGAGGGAGCACTTTCAGATGAACCGCCCCCTT
ATCATCAGGGGAGCCATGAGCACAGCTTTTCAAAGCAGGCAAGCTGAAGA
GAAAGTTGCAAGAAGGCTCTAAGGGGGAAGAAATGAAGGACCTGGTGGGT
GGACTATCATTAATGGATAGTTGGGCACAATAGAACTGTTGTAGTCAAGC
AATGGCAATGAAGTGGACAACCTAGGTCTCTCTATCTATGTACTCCAGAA
AAGAAGCCAACAGGCATGCTCTTACATGTCGTCAAATTATTTTATCTCAC
TACAGAATGCTTTGCTCGCATCAATTTTACTTGTACAGTCTGGCAGTGCT
TCTGAACAAAAGCAAACATGTTTTGCCAGGTTGATAAGAGATGATCTCCC
AAGCATTTTGATTATTTGTTGAGATACTGTAAATGGATCTGTTATCCATT
CCCATACCTGTCATTTCCCTAAACCCCTTGCTGCAGTTTCAGCTCATCAT
TTATAACATGATCCTCTGATTTTCCACCAATAGCTCCCCCTCTCCCTCTA
CCCACCCCTCCCCATCCATGCCACGATGATCTTACAACCTAACTCAAATA
AACTTGTCTAGCCTTTACCATCATGTGACTCCAAGAAATGCAGGTGGGAC
CCTGAATCGTTGGGTGTAGAGTATGCTGATCAGAAGGTGACAGCCCTGGT
ATATGACAAGGGCCAAGACCAACAGCAACCCGTTTTTACTGTGAACCTAG
ACTTTGCAGACTTTGTTCACTTCTCACAGAACACCTCTCAGGTGAAACAT
GTTGGGAAGGATTTGGGCTAAGAGGGCAAAGCAGTGCTATATATCTCCTT
TATTTCGCCTTACTGGGGTAGGCCTTTTGTGCTTCTGGAAGGGTGTTTCA
CTTCAGACAGCAGACAATCCGATATTGTAGGTGGATAGTGTATCCATTCA
TTCCATTACTCAAACAACATTCTAGAGTATGTGGTGAGGTTCAAGTACAT
GGAATATTATTTGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig9355:1342..3406-

>mRNA_C-tenellus_contig9355.2.1 ID=mRNA_C-tenellus_contig9355.2.1|Name=mRNA_C-tenellus_contig9355.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1047bp|location=Sequence derived from alignment at C-tenellus_contig9355:1342..3406- (Choristocarpus tenellus KU2346)
ATGCTGCATGGATTGAATTCAGATTCAGGACCTGGCAATGCCCCAAGGAG
GGTGAAGATGAACACTTTCATGAATAGGAAGTCAAACTGGGCTGAACAGG
GCGAGGGTTGGTCATCAGTGATGAACATTGGCAATGCTGAGGCAGCATGC
ATCTCCTGCTTCAAGGGGAGTGGGGGGCTTCTGGACCCCATGTACTGCAT
GACCCTAGCAGGCTTTTCAGGCAATAGCAATAGTATCCTGCTCATAGGAC
GGTGTCAACCTCGGTGGCTACCCTGTGCCCATGCCCGTGTGAATTCGCTC
TTGGATGGCGTCCCTTTTGGTAGCCCTGAGCAGTGCCACATGACAGACAA
TGCAGATATGAGCAAGGTGTGGGAGGATGGGGTAACAGCTCAGACAAATG
TTGCTCGACTTTTGGCAGAGTCCAACATTCACCAGTCGGAGGAGTTTGAT
GAAGAGAGGAGGCTTTGGTGCGAGAAGTTCATCACTGATGTCCACCGAGG
TCATTTTCCCACCGATCTTATGCTCAGTGGAGGTGGAAAAGGCAATGGAA
ATATAGGTGGAAATGGTCAAATTGGCAACAAGGGCGCTAAGAATCAACCA
CCACAATGGAACAAGCCAATGCAACAATGGGTAACTCAACTTTGTGATGG
TCATGAAACCGAGGTTCAACCAGCAGCACATGAAGATGGGAATGAGAGAG
GGGAGGACATAGAGACAGGATTAGGGGGACATAGTCAAGGACATACAGGG
AACGGACTTGTACGGGAGGTATCCCGGGATGAGGCAGCAAAAGGGATCTT
GAGGGAGCACTTTCAGATGAACCGCCCCCTTATCATCAGGGGAGCCATGA
GCACAGCTTTTCAAAGCAGGTGGGACCCTGAATCGTTGGGTGTAGAGTAT
GCTGATCAGAAGGTGACAGCCCTGGTATATGACAAGGGCCAAGACCAACA
GCAACCCGTTTTTACTGTGAACCTAGACTTTGCAGACTTTGTTCACTTCT
CACAGAACACCTCTCAGGTGAAACATGTTGGGAAGGATTTGGGCTAA
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