mRNA_C-tenellus_contig9328.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9328.1.1
Unique NamemRNA_C-tenellus_contig9328.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Match: A0A836CFW2_9STRA (Acyl-CoA N-acyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFW2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.280e-25
Identity = 65/129 (50.39%), Postives = 84/129 (65.12%), Query Frame = 1
Query:  877 ATTEQQNIYVRLARRGDIGAITKLNLKTLPENYTHQFYENHLANWPQLALVAEHTIDDPTGESKVVGYVLGSMEKTAPSSRSSIAGGSAGGGGTITSMGHVTSLAVLPEWRRGGIARELMANLHDQVEG 1263
            A  +  NI VRLAR  D+ +I  +NL+TLPENYT  FY+N L  +P+L+LVAE + D+  G S VVGYVLG  +   P+     AGGS G        GH+TSLAV PE+RR GIA  L+A LH+++EG
Sbjct:    4 AIVKSSNITVRLARSNDVASIRNINLRTLPENYTKDFYDNQLFQYPKLSLVAESSPDED-GRSMVVGYVLGQTKGLQPT----WAGGSRGP--FAAKEGHITSLAVAPEYRRQGIAMRLIAALHERLEG 125          
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Match: A0A7S2HE16_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HE16_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.530e-23
Identity = 66/147 (44.90%), Postives = 88/147 (59.86%), Query Frame = 1
Query:  847 LLCLYALRAHA--TTEQQNIYVRLARRGDIGAITKLNLKTLPENYTHQFYENHLANWPQLALVAEHTIDDPTG--------ESKVVGYVLGSMEKTAPSSRSSIAGGSAGGGGTITSMGHVTSLAVLPEWRRGGIARELMANLHDQV 1257
            LL L  LRA+   +   +NI +RLAR+ DI  I + NLKTLPENY   FY  HL+NWP +ALVAE     P+         + +VVGYVLG ME T  S         AG    +T  GH+TSLAV+P++RR G+A+++M  +H Q+
Sbjct:   14 LLFLTLLRANVRCSLNAENICIRLARKDDIPGIQRCNLKTLPENYAISFYSQHLSNWPHIALVAEELPAPPSPGTTLLYPRKGEVVGYVLGRME-TGTSK--------AGLVNRMTRHGHITSLAVMPDFRRLGLAQQMMEKVHSQM 151          
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Match: D7FT09_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT09_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 4.240e-20
Identity = 70/165 (42.42%), Postives = 96/165 (58.18%), Query Frame = 1
Query:  826 MIREHTRLLCLYALRAHATTEQ----QNIYVRLARRGDIGAITKLNLKTLPENYTHQFYENHLANWPQLALVAEHTIDDPTGESK---VVGYVLGSMEKTAPSSR------SSIAGGS-----AGGGGTIT---SMGHVTSLAVLPEWRRGGIARELMANLHDQV 1257
            +IRE+ RL  L AL ++A  E      +   RLAR+ DI +I   NL+TLPENY+  FY+ H+ +WP+LALVAEH  D    E +   VVGYVLG +E    +        +++ G S     +G GG +      GHVTSLAVLP +RR G A +LM  LH+++
Sbjct:    2 IIRENARLFFLSALSSNAKCEDVLRPSDFDFRLARKSDIKSIRHCNLETLPENYSTDFYDTHIKDWPELALVAEHA-DRRRNEDQQPQVVGYVLGRIEVNHANXXXXXXXXTALPGWSCRTQKSGRGGAMAIPPPTGHVTSLAVLPGFRRCGAASQLMDMLHERM 165          
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Match: A0A6H5KNJ0_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNJ0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.630e-19
Identity = 70/163 (42.94%), Postives = 95/163 (58.28%), Query Frame = 1
Query:  826 MIREHTRLLCLYALRAHATTEQ----QNIYVRLARRGDIGAITKLNLKTLPENYTHQFYENHLANWPQLALVAEHTIDDPTGESK---VVGYVLGSME----KTAPSSRSSIAGGS-----AGGGGTITSM---GHVTSLAVLPEWRRGGIARELMANLHDQV 1257
            +IRE+ RL  L AL ++A  E      +   RLAR+ DI +I   NL+TLPENY+  FY+ H+ +WP+LALVAEH  D    E +   VVGYVLG +E           +++ G S     +G GG +      GHVTSLAVLP +RR G A +LM  LH+++
Sbjct:    2 IIRENARLFFLSALSSNAKCEDVLRPSDFDFRLARKSDIKSIRHCNLETLPENYSTDFYDTHIKDWPELALVAEHA-DRRRNEDQQPQVVGYVLGRIEINNANXXXXXXTALPGWSCRTQKSGRGGAMMKAPPTGHVTSLAVLPGFRRCGAASQLMDMLHERM 163          
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Match: A0A7S3V5Y1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Y1_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 2.550e-18
Identity = 61/168 (36.31%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  895 NIYVRLARRGDIGAITKLNLKTLPENYTHQFYENHLANWPQLALVAEHTIDDPTG---------------------ESKVVGYVLGSMEKTA--------PSSRSSIAGGSAGGGGTITS---------------MGHVTSLAVLPEWRRGGIARELMANLHDQVEGG 1266
            +I +R+A R D+ AI + NL TLPENY+  FY NHL  WP LALVAEH ++D                        +++++GYVLG +E+TA        P+     +GG+A   G   +               +GHVTSLA+LP +RR G+A +LM  LH  ++ G
Sbjct:   54 HIALRVATRTDVPAIQRCNLATLPENYSSNFYVNHLRQWPDLALVAEHVVEDNESNNSNGLFIPRNPFDNYDASRPQNEIIGYVLGKVEETAILTPPPPSPNPSKIDSGGAADTWGNPNASEFQKQQQQQRGTEMLGHVTSLAILPTFRRRGLAAKLMKQLHYHMQEG 221          
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Match: B8CB65_THAPS (N-acetyltransferase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB65_THAPS)

HSP 1 Score: 87.0 bits (214), Expect = 7.780e-17
Identity = 54/117 (46.15%), Postives = 63/117 (53.85%), Query Frame = 1
Query:  898 IYVRLARRGDIGAITKLNLKTLPENYTHQFYENHLANWPQLALVAEHTIDDPTGESKVVGYVLGSMEKTAPSSRSSIAGGSAGGGGTITSMGHVTSLAVLPEWRRGGIARELMANLH 1248
            I  RLAR+ DI  I K+NL TLPENY + FY NH+  WP+L LVAEH          +VGYVLG +E T P                   +GHVTSLAV    RR GIA  L+  LH
Sbjct:    1 ITFRLARKSDIPQIQKVNLATLPENYNNNFYINHMREWPELCLVAEH----------IVGYVLGKVE-TRP-------------------LGHVTSLAVHSHARRLGIASSLLHQLH 87          
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Match: A0A7S1G113_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G113_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.750e-16
Identity = 59/174 (33.91%), Postives = 86/174 (49.43%), Query Frame = 1
Query:  850 LCLYALR-AHATTEQQ----NIYVRLARRGDIGAITKLNLKTLPENYTHQFYENHLANWPQLALVAE------------------------------HTIDDPT--GESKVVGYVLGSMEKTAPSSRSSIAGGSAGGGGTITSMGHVTSLAVLPEWRRGGIARELMANLHDQVE 1260
            LCL   R +HA    +    ++ +R+ARR D+  I   NL  LPENY   FY NHL +WP+LALVAE                              H+ D+P+  G ++++GYVLG + +     R           G +  +GHVTSLA++ ++RR G+A ELM  LH  ++
Sbjct:   12 LCLAFFRVSHAFASDREFRPHVLLRVARRTDVQGIQSCNLANLPENYHTAFYVNHLRDWPELALVAERITSPTAASSSNHMMTKTASRDSPPATIPVHSSDEPSNVGNTEIIGYVLGKVREEEAEGRP----------GHVERIGHVTSLAIMSDFRRQGLAGELMRQLHYNMQ 175          
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Match: A0A7S4AY40_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AY40_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.360e-15
Identity = 65/178 (36.52%), Postives = 90/178 (50.56%), Query Frame = 1
Query:  829 IREHTRLLCLYALRAHATTEQQ-----NIYVRLARRGDIGAITKLNLKTLPENYTHQFYENHLANWPQLALVAEHTIDDP--------------------TG---ESKVVGYVLGSMEKTA------PSSRSSIAGGSAGGGGTITSMGHVTSLAVLPEWRRGGIARELMANLHDQVE 1260
            +R+  +LL    LR+ A + +Q     +I +RLA R D+ AI + NL  LPENY   FY +HL  WP LALVAE  I  P                    TG   E K+V YVLG +E         P+SR+          G +  +GHVTSLAV  ++RR G+A+ +M+ LH  ++
Sbjct:    1 MRKRLKLLMFTLLRSSACSIRQAPTKTSIQLRLATRTDVPAIQRCNLACLPENYNSNFYCSHLRQWPDLALVAEE-IHHPQQNEMAEDRHQQSRKHFPGFTGGQNEPKIVAYVLGKVETRPSIDYDNPTSRN----------GRVERLGHVTSLAVQKDFRRLGLAKAMMSQLHYHLQ 167          
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Match: A0A1Z5KHW6_FISSO (Ribosomal-protein-alanine N-acetyltransferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHW6_FISSO)

HSP 1 Score: 84.7 bits (208), Expect = 9.950e-15
Identity = 60/137 (43.80%), Postives = 77/137 (56.20%), Query Frame = 1
Query:  886 EQQNIYVRLARRGDIGAITKLNLKTLPENYTHQFYENHLANWPQLALVA-EHTIDDPTG---------ESKVVGYVLGSME-KTAPS-SRSSIAGGSAGGGGTITSMGHVTSLAVLPEWRRGGIARELMANLHDQVE 1260
            +Q  + +RLARR D+ +I + NL TLPENY   FY  HL  WP+L+LV  E T  +  G         ES VV YVLG ++ +T P    SS A  S          GH+TSLAV  E+RR G+A ELM  LH Q++
Sbjct:   40 KQPALTLRLARRTDVPSIQRCNLATLPENYNAAFYTQHLRQWPELSLVVVEETPSNTFGSFPGSPSQPESNVVAYVLGRIDSRTIPVVPTSSHALWSTQQVYQREEFGHITSLAVSHEYRRQGLAGELMEQLHYQLQ 176          
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Match: A0A7S3LD65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD65_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.480e-14
Identity = 57/153 (37.25%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  898 IYVRLARRGDIGAITKLNLKTLPENYTHQFYENHLANWPQLALVAE-HTIDDPTG----------------ESKVVGYVLGSMEKTA--------------PSSRSSIAGGSAGGGGTITS-MGHVTSLAVLPEWRRGGIARELMANLHDQVE 1260
            I +RLARR D+ ++ + NL +LPENY  QF+ NH+  WP+L +VAE + I    G                ES V+ YVLG +E+ A              P  + ++          +T  +GHVTSLAVL  +RR G+ARELM  LH  +E
Sbjct:   50 ITLRLARRTDVPSMQRCNLASLPENYNQQFFTNHMRQWPELTIVAECNDIGQGVGPSSPGNGYSPFSGGGTESNVIAYVLGKVEERAVPVRVDNSMDWHQDPYEQYNM-------NSFVTERVGHVTSLAVLDGFRRQGLARELMNQLHHHLE 195          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9328.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFW2_9STRA1.280e-2550.39Acyl-CoA N-acyltransferase n=1 Tax=Tribonema minus... [more]
A0A7S2HE16_9STRA4.530e-2344.90Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
D7FT09_ECTSI4.240e-2042.42N-acetyltransferase domain-containing protein n=1 ... [more]
A0A6H5KNJ0_9PHAE1.630e-1942.94N-acetyltransferase domain-containing protein n=1 ... [more]
A0A7S3V5Y1_9STRA2.550e-1836.31Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B8CB65_THAPS7.780e-1746.15N-acetyltransferase domain-containing protein (Fra... [more]
A0A7S1G113_9STRA1.750e-1633.91Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S4AY40_9STRA1.360e-1536.52Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1Z5KHW6_FISSO9.950e-1543.80Ribosomal-protein-alanine N-acetyltransferase n=2 ... [more]
A0A7S3LD65_9STRA1.480e-1437.25Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9328contigC-tenellus_contig9328:21..5670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FT09
Preferred namenaa10
PFAMsAcetyltransf_1,RSD-2
Model size1272
Max annot lvl2759|Eukaryota
KEGG koko:K00670,ko:K20791
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0012505,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048471,GO:0070013
Exons3
Evalue2.8e-23
EggNOG OGsCOG0456@1|root,KOG3235@2759|Eukaryota
Ec32 ortholog descriptionAcetyltransferase (GNAT) domain protein
Ec32 orthologEc-24_004370.1
EC2.3.1.255,2.3.1.256
DescriptionN-terminal peptidyl-glutamic acid acetylation
Cds size447
COG categoryJ
BRITEko00000,ko01000,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790170.6679323-CDS-C-tenellus_contig9328:20..2421680790170.6679323-CDS-C-tenellus_contig9328:20..242Choristocarpus tenellus KU2346CDSC-tenellus_contig9328 21..242 -
1680790170.684226-CDS-C-tenellus_contig9328:3195..32611680790170.684226-CDS-C-tenellus_contig9328:3195..3261Choristocarpus tenellus KU2346CDSC-tenellus_contig9328 3196..3261 -
1680790170.7041247-CDS-C-tenellus_contig9328:4686..48451680790170.7041247-CDS-C-tenellus_contig9328:4686..4845Choristocarpus tenellus KU2346CDSC-tenellus_contig9328 4687..4845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790170.723382-UTR-C-tenellus_contig9328:4845..56701680790170.723382-UTR-C-tenellus_contig9328:4845..5670Choristocarpus tenellus KU2346UTRC-tenellus_contig9328 4846..5670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9328.1.1prot_C-tenellus_contig9328.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9328 21..4845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9328.1.1

>prot_C-tenellus_contig9328.1.1 ID=prot_C-tenellus_contig9328.1.1|Name=mRNA_C-tenellus_contig9328.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=149bp
MIREHTRLLCLYALRAHATTEQQNIYVRLARRGDIGAITKLNLKTLPENY
THQFYENHLANWPQLALVAEHTIDDPTGESKVVGYVLGSMEKTAPSSRSS
IAGGSAGGGGTITSMGHVTSLAVLPEWRRGGIARELMANLHDQVEGGV*
back to top

mRNA from alignment at C-tenellus_contig9328:21..5670-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9328.1.1 ID=mRNA_C-tenellus_contig9328.1.1|Name=mRNA_C-tenellus_contig9328.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5650bp|location=Sequence derived from alignment at C-tenellus_contig9328:21..5670- (Choristocarpus tenellus KU2346)
GACCTTATCTTCTTGGCCAATGTACTGGTCCTGACTTGGAAAGAGTTAGC CTGCCTCATCTCCAGGTTCCATGGTACGAAGTAGGCGTTGGTTTAGGCTT TCACAACTCCTCGCTTCACCTTCCGCTAAAGTTTTCATGAATGATAGCAT GATACACCTGTTGCACGACAAGTATAGCATAGACTGTATCTCTGCGTAGG AGATGTCTATTCCCCTTCGTATATTCTGATCCATTCATGCTTATGTCATA GTGATCATAGGCGGTTAAGTGTCACTCTCTCATATTCTTGAATCTTCTGT ATCGACGACGACATGTTCCTCTAAGGTATTGACACTTTTGTGTTATCTCG CAACTGGTCACACCCAACGCTCTTCACGTTGATGGCGCAGATTGTCGTCG ACTAGGATTCATAAGATTGAGTGGTCTGATAATCCTATGCAGGGGTTCCT AGCAAGTCATTTTCATAGGGTCAAGTGAGGTACGTACTTCAACCTCGATG TCAGAAGATGTCAACATGAGCTTCGATGATACATCCCAAATATGTGACCA TTGAGGCACGAGGTGTCATCTGTCGGCAACCTAATATTGTCAGCCCCAAA CACCCTTGTCGTTGAGGAAACACAGCTTGGGTCTTTAAAAGGTGCCAAAT TTCCCATCTACAAACCTAGTTTCGTTAAGTAGCAAATGCCCATGTCAAAG TCCCTATCCCTGTTGATAGTCTTGTCATTAGTTCCGCGATATTTGATATG CAACAACGGCAATGACTTACTGTCAGGTGAACGGACGGTCGATGTAATTG CAACCATTCTATCCCCCCTTCCCAGATGATTCGGGAACACACGCGCCTAC TGTGCCTCTATGCTCTCCGCGCTCACGCAACGACTGAGCAGCAAAATATA TATGTGCGCCTTGCTCGACGGGGAGACATCGGTGCAATCACAAAACTAAA CCTCAAAACTCTTCCCGAGAACTACACCCACCAGGTGACTATATTATGTG GTCAGCGCAGGTTGGATGGATTTTTTCCAGCGCTGGATTGACTCTTTCCT GTAGTATGAGGATGAATTTTGTCTGATAGAGAGCTCGAGTGTTAGAGCAA TGGCTTCGTTATAATAATAATAATAACTTCCTGACTTTCTGACTGTCGTT ATTTGCGCAGGGCAACACCCATGGTATTTCCTTCTGCTCGGTACTGGGAG CAACAGAACTTATTTTGTAGGTTATCAGGAAGTGCATGTTTTGTAGGTAC TGTGTAACGTACTGTGTAACGTACTCTATTACGTACGCTTGTTGTACATG GTGTGCATTTGGTGTATCCCACAGGAATAGTGTGCGGGATGGAAATGATT ATGAAAAGCAAACTGGGTCAGCAATCCTGACCCAGTCTTCCTGCGTCACA CTCTACCTTTTTGTTTCTCGACATTTGTGTGAGATACATGCAACACACGC CTTAGTTGTGTTAGGGCTTACTGAATCGTTGGTCGCAAAATGATGCGAAT TGCAGTTACTGAAGTTATTCAATTCAGTTAAACTGAATGAAAACTAGTTG ACAAAAAAAGAGTTGAGCGGCCAGATGCGATCGTTTTTAAAATTTTCACT TGTACACTTGCTGCGCTCTCTGGTGGAAATTTCCTTGTGGAGGGGCAATG GCGGTGAGTGCCTTGTATGCCTTACTTCCTGTACTATACGCATGTTTCAA CCCACAACGCTGATTTGAGGTTGCTCTTGGGCAGTGTTGATTCCTTAAGC ACTCCAATGGTTTTACCATTTTGTGGGAGGCATTACACATCCTAGCCCCA GTCAATATGGTTACTTCTATGAGCAAAAACCTACCCAAACCCTTCAATCT ACCCAAATCACACGAGCAATCAATGCGTACATAGGTCGTGTCAACGCAAT TCATCTACCAAACTGAACAGGTGAGGAGGATACCTACGGTGAGGACTGCC CCTACTATGCCCTGCGATGAAATGTCGACAAAATGGTCATCCTAAAATAT ACCATGCATAAATGTATCTATATATATATATACATATTGTAAAGACCACA ATATGTTTAAAAAAAATAAAAACATAAAGCCCCCCCCCCCCTCCCCCCCC CCCCCCCCCTTTTTTTTTTTTTGTTTGTGTGTTTCTTTTCTTCTGCTTTT TTTTNNNNNNNNNNAAGAAGCAGCATTTTTCAGGAAAAAAAAAAAAAGAA ATTGCCCCCCCCCCCCCCCCGTGACCTCTTAACTTGATGTTGTTGGATGT CTTCCCCATGGCCTCTCGTCATTGTTGACTGGGAAAATATAATTCATCTG CTGTGGATGCTGGACACTCTGCTGTTATGCTTGCTGTTACGCTTGTTGCG GTGACGGATGGGACTGACTGACTCCCTTTCACCTTCGATGGCGGTGAATA CACGAAAAGTTCTACGAGAATCACTTGGCTAATTGGCCGCAGCTGGCTTT GGTAGCTGAACACACGATCGACGATGTGAGAATGTTATTTTTATTTTTAT TCTTATTATTTTTATTATTTTTATTAATATTTTTGTTTTATTTTTATTTT ATTTGTTCATTTTTTTTTATCGTTGAGAACTGCGACGGCGCCATTGCCTT CTCAGTACGATTGAAAAAATGGGAATAAAAAAAATTTTTAAATATATATA TATATATATATATATATATCTGAGCTGAAAAAGTTCTGGGATTTTTTTTT CAAGTGAAAGAGAAAAAATAATCACAAAGAGAAGAGTAGTGCCCCGATAT TGCTGAATATGTCAGAGGTCACATATTGCGCATTTGTGATAAAGTCAAGG GTATCACTATTAAAACCACAGCTCTCTATATACTTCTCTGTTCATGGATT CGGATCTGCCTGACGAGACCTGTGGAGGCCTTGGAGTTTTTTCCCCTCCA GGCTCCCTGTGCGGCTCGGTGATCTGCACGTGCGTTACGCACGCCTCCTC ATGCCCTGATAGTTGAATAATAATAATAAATAAGAACGAATCGAAATTTC TCGAGCCGGTTTATCTTTGACCAAAAAAATGATTTTTTGGTTCACAACGC TATTTCTTTTGTTGCTATTATTATTATTTGTATCTTATTATTTGTATCTT ATACGTTCTTTTATGTAAATAATTTGTGTGTTTGTGTGTGTTTGTGTGTG TTGGCGCTTGTGACAGGACGAGGATAACTCGGGGGCAGTCCATTTTAGTT TTTTATTTTGAGAGAATCGTTTTTTGTTTTGACACTGACTTCAATTTTTT TGTTTGTTTGTTTGTTTGTTTGTTTGAAAATGATGTGTTTTTCATTTTGA GGGATAACGCCTTCCCGGGGCGATGTCTTCTGTTGTTCTTTGATCTGATT TTCCCATTACTTCGATGCCCTGATGAGAAGGAAGTATGTACCTATCAATT CCTAATGCAACCATACCTAATAATGCAACCATGTATGTCATGAAGGGATG TAATAACTTTCTGGCAGTGTTCAAAACAGTAGTGGCAGTAGAGATGGTAT GAACCTCCTGCCTTAACTTAGAGGCAACAACTCCAATATTTTTATTATTT GGTATGTATGCTATGGGGGTCGCATGTGAAGTACTTCTCAACAGTGAAGC CTTAATGGTAGTCAAATGATAATATTATTACCATAAAACTATAAACACGA TTTATGCCCTGTGGGGGTATTTTTTGTACGATTTGCAGCGTTTGAGACTT AAAAAAAATGAAAATTGTTGCATTGGATTGGCCTCAAGTCATGTCCACAC CCATCAGGCAGTGCTATGAGATGATGGTACATTTGCGAAAGGCATGTCCA CACCCATCAGGCAGTGCTATGAGATGTTGGTACGTTTTTGAAAGGCATGT CCACACCCATCAGGCAGTGCTATGAGATGATGGTACGTTTTTGAAAGGCA TGTCCACACCCATCAGGCAGTGCCATGAGACGATGGTACGTTTTTGAAAG GTGTACTGCTTGTTTTGAGTGCGCTGGTGAGACTCCTCACCAATGATGTT TATGGATGGGACCATGCCCTCCGAGGAACAAAAAAAAAGAAAGTCCTCCA GATAGTGCAGGTGAAGAGGAAGAGTATGACAGATTGTGCACATGCAGGCG GTCTTTGTTGAGGTGTAAAGGGGGTTGGTTAAGGGTGAGCTTTCTTGCTT GTGGCAACTATGAGCGCGCCCATGGTATGTTGAGCAACTCATGGTATGTT GAGCAACTCATGGTATGTTGAGGAACTATGTGGAGACAGCCGCAAAGCTT TTTTGGAGGATCTTTTATCCTTTATGATTGGAGGTTAATTTCAAATGGTG TTGTACGCATGGACATCTATGTTGGAGAGGAATTTCTGCCCACAAGGGCC TCAACGTTGAAGTTTTTTTTTTTGAGAGGTGTGTTGAGATGTTGCATACA TTTTTAGGACAGAGTTATTTAGTTGTCATTGTTGTCATTGTGCTCTGGTG GTATCACTGCTGGTGAGGGCTCTATGCGTTTCTATAGAGTTGAATAACAT AGCTACCCCTTGGAGTGTATGGCAGCATCTAGGGAGTGTATGGTTTCGAA GTACTACTACTGTCAATAATAATAATATTAATAATAATAATAATAATAAT AGTGTTCATAATAGTGTTAGTCCTGCACAGAGTTTTTAATAGTACGCAGT ACTTTGTGGTAGAAATAATAATAAATAATAATAATATGATAATAATAAGA TGGCATCACCATGCTACATGAATGTAGGACGAAAATACTTGAGGTGTCAA CTGGTGCGCATGTGAATGCTCTGCCCCCTGAAAATGTTTAAGAAAATGTT TAAGAAAATGTTTAAGAAAATGTTTAAGAAAATGTTTAAGAAAATGTTTA AGAATTGTTTAAAAAGGTTGGGCAGCTCCCTGGCTTCGACTCTGGGGCTG CTTGAGGGTCTACTTAGGGTTAGGTTTAGCTTTGGGTTATATTTAGGTTT AGGGTGAAGATAAAGAGGTAGGGATGTTTGAAAAGAGTATATTTATTGCT GGGAGCTGCTTGTACAGCACAAGTTGATGTGTGGATGAATTATTTTCTGA TGGGGTCATAGATCTGACAGTTACGTCTCTTGTTCTTGTTTGGGTACAAG GGGAGAGTACTGTTAGGATTCCACCAGTATTGTCGTTGCCTCCACTGCCT GGCTGAGTCAGGTTTGGGTTAGGCCTGTGCCTAATTTGACAAAAGTCTTG TGCTAAATTTTTCTAATTTTTTCAAGGATTTTTTCAAGGATTTTGTAGAA CAAAAGATAAACAGGTTTCAAAAATATACTACTGGGAAACTAAAGAGTAA GGGTATGATATCCTATTGTGTTCACTCACAACTCCAACCCTAACCCTTAC CCTTACCCTATCCCTAACCCAAGATGAATGTCTTATTCCTCCACTTGAAC ACTGACTCAATCATACAAAAATTCCCAGCCCACAGGAGAGTCCAAGGTAG TGGGGTATGTCCTGGGGAGCATGGAGAAAACTGCTCCTAGCTCAAGGTCA AGTATAGCAGGTGGCAGTGCTGGTGGGGGTGGGACAATAACCTCCATGGG GCATGTGACTTCCTTGGCAGTACTGCCAGAGTGGCGCAGGGGAGGCATAG CCCGAGAGCTGATGGCTAACCTTCATGACCAGGTGGAGGGTGGTGTTTAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9328:21..5670-

>mRNA_C-tenellus_contig9328.1.1 ID=mRNA_C-tenellus_contig9328.1.1|Name=mRNA_C-tenellus_contig9328.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=447bp|location=Sequence derived from alignment at C-tenellus_contig9328:21..5670- (Choristocarpus tenellus KU2346)
ATGATTCGGGAACACACGCGCCTACTGTGCCTCTATGCTCTCCGCGCTCA
CGCAACGACTGAGCAGCAAAATATATATGTGCGCCTTGCTCGACGGGGAG
ACATCGGTGCAATCACAAAACTAAACCTCAAAACTCTTCCCGAGAACTAC
ACCCACCAGTTCTACGAGAATCACTTGGCTAATTGGCCGCAGCTGGCTTT
GGTAGCTGAACACACGATCGACGATCCCACAGGAGAGTCCAAGGTAGTGG
GGTATGTCCTGGGGAGCATGGAGAAAACTGCTCCTAGCTCAAGGTCAAGT
ATAGCAGGTGGCAGTGCTGGTGGGGGTGGGACAATAACCTCCATGGGGCA
TGTGACTTCCTTGGCAGTACTGCCAGAGTGGCGCAGGGGAGGCATAGCCC
GAGAGCTGATGGCTAACCTTCATGACCAGGTGGAGGGTGGTGTTTAG
back to top