mRNA_C-tenellus_contig9320.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9320.1.1
Unique NamemRNA_C-tenellus_contig9320.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9320.1.1 vs. uniprot
Match: A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 7.260e-60
Identity = 122/211 (57.82%), Postives = 138/211 (65.40%), Query Frame = 1 
Query:    1 MTDRTAEFQGVVKVFRRSIPVDE------LARPPPS---RDTSDFFRTAASIALGFEGTSKLIDRVKKLVGRKGFSNNPAAEINVVMNLFESDMADLQRDIEILSLQIHASTNLNVKGTSLSLSLASTTSRYTDGNSKGGPRPNSQHQKHCLHIVTTLRNAAKEHTKAFRDALLLRAAVEKQQNDRQRIFSHSRGVAPMAQLDYPLFGGGG 606
            MTDRT EF G V  FR ++          L R       R TS+F + AAS+A+GFEGTS+LI R+KKLVGRKGFSNNPAAEI+ VM LFE DMA LQ+DI   SLQ                       RY DG ++G P  NSQ Q HC  IVTTLR +A+EHTKAFRDAL+LRAAVEKQQN+RQR FSHSRGVAP  QLDYPLFG  G
Sbjct:    3 MTDRTKEFHGAVSAFRPTVTAVNNSGEAALIRAQTDLGYRKTSEFLQLAASVAVGFEGTSRLIGRLKKLVGRKGFSNNPAAEISDVMKLFEGDMAGLQKDIS--SLQ-----------------------RYADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALMLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGSSG 188
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BLAST of mRNA_C-tenellus_contig9320.1.1 vs. uniprot
Match: A0A835Z5V3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.790e-27
Identity = 69/200 (34.50%), Postives = 107/200 (53.50%), Query Frame = 1 
Query:    1 MTDRTAEFQGVVKVFRRSIPVDELARPPPSRDTSDFFRTAASIALGFEGTSKLIDRVKKLVGRKGFSNNPAAEINVVMNLFESDMADLQRDIEILSLQIHASTNLNVKGTSLSLSLASTTSRYTDGNS--KGGPRPNSQHQKHCLHIVTTLRNAAKEHTKAFRDALLLRAAVEKQQNDRQRIFSHSRGVAPMAQLDYPLF 594
            M DRTAEFQG ++V  +     +      +   +DF +  +++AL  EGT+KLI+++ +LVGRKG SN+P  EI  V  LF+ DM  +Q+++  L                           + DG S  +G P P SQ  KH L+++  L+  A+E   AF+ AL  R AV ++ NDR++++S +R V    Q++ PLF
Sbjct:    1 MIDRTAEFQGCIRVLHQHDGRPDQRPQYEAPQPTDFTKAVSALALSLEGTAKLIEQLMRLVGRKGTSNDPTMEITDVSRLFKGDMDAVQQELSALQA-------------------------FIDGRSGKRGAPAPGSQRHKHSLYMLDALKQLAQEQVAAFQAALKQRNAVMRELNDRRKVYSTTRSVGLSVQMNSPLF 175
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BLAST of mRNA_C-tenellus_contig9320.1.1 vs. uniprot
Match: A0A4D9CWV4_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV4_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.280e-24
Identity = 81/211 (38.39%), Postives = 111/211 (52.61%), Query Frame = 1 
Query:    1 MTDRTAEFQGVVKVFR-RSIPVDE-------------LARPPPSRDTSDFFRTAASIALGFEGTSKLIDRVKKLVGRKGFSNNPAAEINVVMNLFESDMADLQRDIEILSLQIHASTNLNVKGTSLSLSLASTTSRYTDGNSKGGPRPNSQHQKHCLHIVTTLRNAAKEHTKAFRDALLLRAAVEKQQNDRQRIFSHSRGVAPMAQLDYPL 591
            M DR+ EFQG++K+F    +P +E                PPPS  TSDF   AA IA G+ GT +L+ R+++LV RKG  N+P AEI  V  +F+ D+A LQ DIE  SL  HA  +  + G                G+ KGG     +H +HC  +V TLR  A EH +AF+ AL  R  + ++Q DR++ F+HS    P    D PL
Sbjct:    1 MMDRSREFQGLLKLFGITDLPPEEDESDPFEPFPSPTSTAPPPS--TSDFGLAAARIAQGYSGTWRLVQRLQRLVTRKGMHNDPTAEIEDVTAVFKKDLAGLQGDIE--SLLRHAGRHYRLAGVD-----GGRKDNVDRGHEKGGCHDQQRH-RHCTCVVDTLRTRAGEHARAFQAALQTRQHILQEQADRRKRFTHSA-PGPRLAYDSPL 200
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9320.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KU27_9PHAE7.260e-6057.82t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835Z5V3_9STRA2.790e-2734.50Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A4D9CWV4_9STRA1.280e-2438.39t-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9320contigC-tenellus_contig9320:2309..4324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LR19
Preferred nameSTX5
PFAMsSNARE,Syntaxin-5_N
Model size1159
Max annot lvl2759|Eukaryota
KEGG koko:K08490
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000149,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0001505,GO:0002164,GO:0002376,GO:0002520,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006836,GO:0006873,GO:0006875,GO:0006878,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008104,GO:0008150,GO:0008283,GO:0008361,GO:0009306,GO:0009653,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019222,GO:0019725,GO:0019953,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030097,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033206,GO:0034498,GO:0034613,GO:0035166,GO:0035167,GO:0042147,GO:0042175,GO:0042176,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045732,GO:0045786,GO:0045930,GO:0046903,GO:0046907,GO:0046916,GO:0046983,GO:0047485,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048278,GO:0048280,GO:0048284,GO:0048285,GO:0048308,GO:0048313,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051726,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060305,GO:0061024,GO:0061025,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0090166,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140013,GO:0140029,GO:0140056,GO:1903008,GO:1903046,GO:1903047,GO:1903358
Exons4
Evalue1.09e-61
EggNOG OGsKOG0812@1|root,KOG0812@2759|Eukaryota
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-06_004720.1
Descriptionvesicle docking
Cds size1158
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790170.4501314-CDS-C-tenellus_contig9320:2308..24671680790170.4501314-CDS-C-tenellus_contig9320:2308..2467Choristocarpus tenellus KU2346CDSC-tenellus_contig9320 2309..2467 +
1680790170.4612129-CDS-C-tenellus_contig9320:2635..27571680790170.4612129-CDS-C-tenellus_contig9320:2635..2757Choristocarpus tenellus KU2346CDSC-tenellus_contig9320 2636..2757 +
1680790170.473909-CDS-C-tenellus_contig9320:3011..32371680790170.473909-CDS-C-tenellus_contig9320:3011..3237Choristocarpus tenellus KU2346CDSC-tenellus_contig9320 3012..3237 +
1680790170.4850867-CDS-C-tenellus_contig9320:3673..43241680790170.4850867-CDS-C-tenellus_contig9320:3673..4324Choristocarpus tenellus KU2346CDSC-tenellus_contig9320 3674..4324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9320.1.1prot_C-tenellus_contig9320.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9320 2309..4324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9320.1.1

>prot_C-tenellus_contig9320.1.1 ID=prot_C-tenellus_contig9320.1.1|Name=mRNA_C-tenellus_contig9320.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=386bp
MTDRTAEFQGVVKVFRRSIPVDELARPPPSRDTSDFFRTAASIALGFEGT
SKLIDRVKKLVGRKGFSNNPAAEINVVMNLFESDMADLQRDIEILSLQIH
ASTNLNVKGTSLSLSLASTTSRYTDGNSKGGPRPNSQHQKHCLHIVTTLR
NAAKEHTKAFRDALLLRAAVEKQQNDRQRIFSHSRGVAPMAQLDYPLFGG
GGGGNSGLKRRDRYKSRVGEHSTKGASSGVAEGGLGNDQQLRRPPEQLKA
TTIPKLEQGQGPENTPLPFPGANTDVGKTGTNGFDPNGHVELFSTAHPAM
DRETRRTGIATVGETGERITAPRLPGVLAPPAQPSSRNNLSLDSGATYGS
AWSNGGGNSGVAGKGRSHSGSTQGVGGSFGLRKRGG
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mRNA from alignment at C-tenellus_contig9320:2309..4324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9320.1.1 ID=mRNA_C-tenellus_contig9320.1.1|Name=mRNA_C-tenellus_contig9320.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2016bp|location=Sequence derived from alignment at C-tenellus_contig9320:2309..4324+ (Choristocarpus tenellus KU2346)
ATGACTGACAGGACAGCTGAGTTTCAGGGTGTCGTTAAGGTTTTCCGTCG
GTCCATCCCAGTGGATGAACTAGCACGACCGCCTCCATCACGGGACACGT
CTGACTTCTTTCGCACTGCAGCGAGTATTGCCCTCGGATTCGAGGGCACC
TCCAAGCTAGTACGTGTCCAAGGAAGGTTGTTAGGGGCCCTAGATGTCTA
ACAAAGTAGTAGACTGTAAAATTTTGCAATACTTTATGTCCCCCATAAGG
TTCAAGTATCCCTCTCTCAACTTGCGAAGTATTGGCACGGTGATGTATCA
CCCACCAAACGCCAACTTCTCGAACAGATCGACAGAGTCAAGAAGCTTGT
AGGGCGGAAAGGCTTCAGCAACAACCCAGCAGCCGAGATCAATGTCGTTA
TGAACCTTTTTGAAAGTGATATGGCGGATCTTCAGAGAGACATTGAGATG
TTGCAAAGGTGAATCGACCTGTATCCTCACGATGTGACGTGTTGTCGATC
CTAAGTTGGTGAGCATTACCTGCAAAAGGCACAACTTAATTTCACGTCCA
TACCAATGGCAATTGGTATCTAAAATTGGATGAGGAGACCTGCTTTACCT
CGTTGTGGTAGTCTATTTTTGCCTCAGACATCAACAGATTCGACTACACA
TTGATCAGGAATAGTGGAAACACTAATGCCCTGAAAATGCGAACAACCAG
AAGACTCTCACTTCAAATCCATGCTTCCACAAATTTAAATGTTAAAGGCA
CTAGCTTGTCCTTGTCCCTCGCCTCTACCACCTCCAGGTACACCGACGGG
AATAGTAAGGGAGGCCCTCGACCTAACAGTCAGCACCAGAAGCACTGCCT
TCACATAGTCACCACGCTGCGCAATGCTGCCAAGGAACACACCAAGGCCT
TTAGGGATGCGTTGCTACTACGAGCAGCGGTGAGGGAGCTCAGTAGCAAA
CGGTTTGTCGATGTTTTGGGGGCAAAGGGTTGACGCTGCTTCTGAACCTT
GAAGTTTTCAGAGTGTGGAACAAAGTTCGAAAGCACATCTTCTGTTTGTT
TTTGAGAGATTGGCGGGGGAATGCACACCTTGAAAGAGAGGGAATGTGTG
TGTAGGCCTTGCATCTCCATCAATCCACTCTACGGGCAGCTATTGCTTCT
TCAATTGCTTGCAACTTCCACTGAAGCGCACCATCCGTGCCGACGTATAT
AGCAGGATTTAGTTATCTAGATTAGGTATGCCGTGCCACCTGCTGCTATC
CTTTGTACACAGTGGGCTAAGGGTTGTTTCTAGAACAATTCCCTTTTCCT
TCAACAGCAGTAAAAATCAAGAGATGTAAACACACTTCACTTTTTTTAAT
GTACATTTTGCACAGGTTGAAAAACAGCAAAACGACCGACAACGCATATT
CTCGCACTCAAGGGGTGTTGCACCCATGGCACAGCTCGATTACCCCCTCT
TTGGTGGCGGCGGCGGTGGAAACAGTGGCCTCAAGCGCAGAGACAGGTAC
AAAAGCAGAGTCGGTGAGCACAGCACAAAAGGGGCATCCAGTGGGGTTGC
AGAGGGGGGACTAGGTAATGACCAACAATTGAGGAGACCTCCGGAACAGC
TGAAGGCTACAACAATACCAAAGCTGGAGCAAGGCCAAGGACCTGAGAAC
ACCCCTTTGCCATTCCCTGGAGCAAATACTGATGTTGGTAAGACAGGAAC
AAATGGTTTTGATCCAAATGGCCATGTGGAGTTGTTCAGCACTGCACATC
CTGCCATGGACAGGGAGACCAGGCGGACAGGTATAGCTACAGTAGGTGAG
ACTGGGGAAAGAATCACAGCTCCAAGGCTGCCAGGTGTCCTGGCCCCACC
AGCTCAGCCATCAAGCAGGAACAATTTAAGCTTAGATTCAGGAGCAACTT
ATGGGAGTGCTTGGAGCAATGGAGGGGGGAACAGTGGGGTGGCTGGCAAG
GGCAGATCTCATTCTGGGTCTACTCAGGGTGTTGGGGGGAGCTTTGGCCT
GCGGAAGAGGGGAGGT
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Coding sequence (CDS) from alignment at C-tenellus_contig9320:2309..4324+

>mRNA_C-tenellus_contig9320.1.1 ID=mRNA_C-tenellus_contig9320.1.1|Name=mRNA_C-tenellus_contig9320.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1158bp|location=Sequence derived from alignment at C-tenellus_contig9320:2309..4324+ (Choristocarpus tenellus KU2346)
ATGACTGACAGGACAGCTGAGTTTCAGGGTGTCGTTAAGGTTTTCCGTCG
GTCCATCCCAGTGGATGAACTAGCACGACCGCCTCCATCACGGGACACGT
CTGACTTCTTTCGCACTGCAGCGAGTATTGCCCTCGGATTCGAGGGCACC
TCCAAGCTAATCGACAGAGTCAAGAAGCTTGTAGGGCGGAAAGGCTTCAG
CAACAACCCAGCAGCCGAGATCAATGTCGTTATGAACCTTTTTGAAAGTG
ATATGGCGGATCTTCAGAGAGACATTGAGATACTCTCACTTCAAATCCAT
GCTTCCACAAATTTAAATGTTAAAGGCACTAGCTTGTCCTTGTCCCTCGC
CTCTACCACCTCCAGGTACACCGACGGGAATAGTAAGGGAGGCCCTCGAC
CTAACAGTCAGCACCAGAAGCACTGCCTTCACATAGTCACCACGCTGCGC
AATGCTGCCAAGGAACACACCAAGGCCTTTAGGGATGCGTTGCTACTACG
AGCAGCGGTTGAAAAACAGCAAAACGACCGACAACGCATATTCTCGCACT
CAAGGGGTGTTGCACCCATGGCACAGCTCGATTACCCCCTCTTTGGTGGC
GGCGGCGGTGGAAACAGTGGCCTCAAGCGCAGAGACAGGTACAAAAGCAG
AGTCGGTGAGCACAGCACAAAAGGGGCATCCAGTGGGGTTGCAGAGGGGG
GACTAGGTAATGACCAACAATTGAGGAGACCTCCGGAACAGCTGAAGGCT
ACAACAATACCAAAGCTGGAGCAAGGCCAAGGACCTGAGAACACCCCTTT
GCCATTCCCTGGAGCAAATACTGATGTTGGTAAGACAGGAACAAATGGTT
TTGATCCAAATGGCCATGTGGAGTTGTTCAGCACTGCACATCCTGCCATG
GACAGGGAGACCAGGCGGACAGGTATAGCTACAGTAGGTGAGACTGGGGA
AAGAATCACAGCTCCAAGGCTGCCAGGTGTCCTGGCCCCACCAGCTCAGC
CATCAAGCAGGAACAATTTAAGCTTAGATTCAGGAGCAACTTATGGGAGT
GCTTGGAGCAATGGAGGGGGGAACAGTGGGGTGGCTGGCAAGGGCAGATC
TCATTCTGGGTCTACTCAGGGTGTTGGGGGGAGCTTTGGCCTGCGGAAGA
GGGGAGGT
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