mRNA_C-tenellus_contig9318.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9318.1.1
Unique NamemRNA_C-tenellus_contig9318.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9318.1.1 vs. uniprot
Match: A0A6H5KN32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN32_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 6.190e-16
Identity = 41/91 (45.05%), Postives = 56/91 (61.54%), Query Frame = 1
Query:    4 SPLMTCRQEGGWRVITRGQATCVLRRMVKGLKLRREEYAVHSDRIGGVTRLANMGVTELVIQREGRWKSRAFMGYVRDNRRDPVLMSKGLA 276
            +PLM   ++G W V++R +AT VLR M + +      +A+HS RIGG T+LA  G + + IQR GRWKS AFM YVR        +S+ LA
Sbjct:   25 APLMQSVKQGRWAVVSRSEATTVLRDMARRVGEDPTHFALHSGRIGGATQLAKQGASVVQIQRAGRWKSGAFMTYVRAGGDGANCVSRALA 115          
BLAST of mRNA_C-tenellus_contig9318.1.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.310e-15
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 DSPLMTCRQEGGWRVITRGQATCVLRRMVKGLKLRREEYAVHSDRIGGVTRLANMGVTELVIQREGRWKSRAFMGYVRD 237
            ++PL+T +   GWRVITR +    LR MV+ + L    +A+HS RIG  T++A  G++ L IQ  GRWKS+AFM YVRD
Sbjct:  244 NAPLLTRQTPSGWRVITRTEGVAALRVMVESIGLNPAHFALHSGRIGAATQMAAQGLSALQIQHAGRWKSQAFMVYVRD 322          
BLAST of mRNA_C-tenellus_contig9318.1.1 vs. uniprot
Match: A0A6H5K8A0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.400e-14
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 1
Query:    4 SPLMTCRQEGGWRVITRGQATCVLRRMVKGLKLRREEYAVHSDRIGGVTRLANMGVTELVIQREGRWKSRAFMGYVRDNRRDPVLMSKGLAE 279
            +PL     +  W+VI+R +A+  LR +V       ++YA+HS RIGG T LA+MG + + IQR GRWKS AFM YVR        +S+ L E
Sbjct:  112 APLTQSWAQDRWKVISRAEASRHLRLLVSAAGRDPQKYALHSGRIGGATHLASMGASVIQIQRAGRWKSSAFMVYVRAGGEGAKFVSQALTE 203          
BLAST of mRNA_C-tenellus_contig9318.1.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.350e-13
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = 1
Query:   37 WRVITRGQATCVLRRMVKGLKLRREEYAVHSDRIGGVTRLANMGVTELVIQREGRWKSRAFMGYVRDNRRDPVLMSKGLA 276
            W+V T  Q++  LR +V G  L+ EEYA HS RIGG TRL  MG++   IQ++GRWKS AF  Y+R N  D    S  LA
Sbjct:  277 WKVWTCAQSSSALRDLVAGQGLKPEEYAPHSGRIGGATRLGAMGLSSWAIQQQGRWKSSAFQSYLRANLDDVQKASFALA 356          
BLAST of mRNA_C-tenellus_contig9318.1.1 vs. uniprot
Match: A0A6H5JRM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRM8_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 3.550e-13
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    4 SPLMTCRQEGGWRVITRGQATCVLRRMVKGLKLRREEYAVHSDRIGGVTRLANMGVTELVIQREGRWKSRAFMGYVRDNRRDPVLMSKGLAE 279
            +PLM    +  W+VI+R + +  LR +V       ++YA+HS RIGG T LA MG + + IQR GRWKS AFM YVR        +S+ L E
Sbjct:  156 APLMQSWAQDRWKVISRAETSRHLRLLVSAAGRDPQKYALHSGRIGGGTHLAIMGASVIQIQRAGRWKSSAFMVYVRAGGEGAKFVSQALTE 247          
BLAST of mRNA_C-tenellus_contig9318.1.1 vs. uniprot
Match: A0A1S3I286_LINUN (uncharacterized protein LOC106160349 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I286_LINUN)

HSP 1 Score: 60.1 bits (144), Expect = 1.610e-8
Identity = 29/63 (46.03%), Postives = 41/63 (65.08%), Query Frame = 1
Query:   46 ITRGQATCVLRRMVKGLKLRREEYAVHSDRIGGVTRLANMGVTELVIQREGRWKSRAFMGYVR 234
            +TR Q TC LR++   ++L    Y  HS RIGG T  A++G+   +I++ GRWKS AFM Y+R
Sbjct:  326 VTRHQFTCALRQLFTAIQLNDTRYKSHSFRIGGATLAASLGLPSDLIRQLGRWKSNAFMKYIR 388          
BLAST of mRNA_C-tenellus_contig9318.1.1 vs. uniprot
Match: A0A822H4P3_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822H4P3_9NEOB)

HSP 1 Score: 54.7 bits (130), Expect = 1.290e-6
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   46 ITRGQATCVLRRMVKGLKLRREEYAVHSDRIGGVTRLANMGVTELVIQREGRWKSRAFMGYVR 234
            +T+ Q   + R+ ++ L +  +EY  HS RIG  T  A  GV+E+ +QR GRWKS  F  Y+R
Sbjct:  348 LTKYQFQAIFRQCLEALGVAPKEYGTHSFRIGAATEAARAGVSEVEVQRMGRWKSACFARYIR 410          
BLAST of mRNA_C-tenellus_contig9318.1.1 vs. uniprot
Match: A0A821G0U1_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A821G0U1_9NEOB)

HSP 1 Score: 54.7 bits (130), Expect = 1.320e-6
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   46 ITRGQATCVLRRMVKGLKLRREEYAVHSDRIGGVTRLANMGVTELVIQREGRWKSRAFMGYVR 234
            +T+ Q   + R+ ++ L +  +EY  HS RIG  T  A  GV+E+ +QR GRWKS  F  Y+R
Sbjct:  429 LTKYQFQAIFRQCLEALGVAPKEYGTHSFRIGAATEAARAGVSEVEVQRMGRWKSACFARYIR 491          
BLAST of mRNA_C-tenellus_contig9318.1.1 vs. uniprot
Match: A0A8B6FXM2_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6FXM2_MYTGA)

HSP 1 Score: 50.8 bits (120), Expect = 2.170e-5
Identity = 22/56 (39.29%), Postives = 40/56 (71.43%), Query Frame = 1
Query:  109 EEYAVHSDRIGGVTRLANMGVTELVIQREGRWKSR-AFMGYVRDNRRDPVLMSKGL 273
            ++Y +HS R GG T  AN+G+++ + +R GRW+S  A  GY++D+ +D +++S+ L
Sbjct:  176 KKYGLHSLRSGGATTCANLGISDRLFKRHGRWRSETAKDGYIKDSLKDRLIVSENL 231          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9318.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KN32_9PHAE6.190e-1645.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDK3_9PHAE1.310e-1549.37Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8A0_9PHAE3.400e-1443.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDR9_9PHAE1.350e-1350.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRM8_9PHAE3.550e-1343.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1S3I286_LINUN1.610e-846.03uncharacterized protein LOC106160349 n=1 Tax=Lingu... [more]
A0A822H4P3_9NEOB1.290e-641.27(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A821G0U1_9NEOB1.320e-641.27(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A8B6FXM2_MYTGA2.170e-539.29Uncharacterized protein n=1 Tax=Mytilus galloprovi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9318contigC-tenellus_contig9318:119..397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog400682.PAC_15706084
PFAMsPhage_integrase
Model size279
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.00015
EggNOG OGs2D0ES@1|root,2SDY1@2759|Eukaryota,3A87V@33154|Opisthokonta,3BV0X@33208|Metazoa
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790170.223552-UTR-C-tenellus_contig9318:118..1301680790170.223552-UTR-C-tenellus_contig9318:118..130Choristocarpus tenellus KU2346UTRC-tenellus_contig9318 119..130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790170.2340858-CDS-C-tenellus_contig9318:130..3971680790170.2340858-CDS-C-tenellus_contig9318:130..397Choristocarpus tenellus KU2346CDSC-tenellus_contig9318 131..397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9318.1.1prot_C-tenellus_contig9318.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9318 131..397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9318.1.1

>prot_C-tenellus_contig9318.1.1 ID=prot_C-tenellus_contig9318.1.1|Name=mRNA_C-tenellus_contig9318.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=89bp
MTCRQEGGWRVITRGQATCVLRRMVKGLKLRREEYAVHSDRIGGVTRLAN
MGVTELVIQREGRWKSRAFMGYVRDNRRDPVLMSKGLAE
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mRNA from alignment at C-tenellus_contig9318:119..397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9318.1.1 ID=mRNA_C-tenellus_contig9318.1.1|Name=mRNA_C-tenellus_contig9318.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=279bp|location=Sequence derived from alignment at C-tenellus_contig9318:119..397+ (Choristocarpus tenellus KU2346)
GACTCTCCCCTGATGACATGTAGGCAAGAAGGGGGATGGAGGGTGATCAC GAGGGGCCAAGCGACATGTGTCCTGAGGAGAATGGTAAAGGGACTTAAGT TAAGACGAGAAGAGTATGCCGTGCACTCAGATAGGATAGGGGGAGTCACC AGATTGGCGAACATGGGGGTAACAGAATTGGTAATACAGAGGGAGGGAAG ATGGAAGTCGAGGGCATTTATGGGATATGTAAGGGATAACCGGAGGGACC CAGTGTTAATGTCAAAGGGCCTGGCAGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9318:119..397+

>mRNA_C-tenellus_contig9318.1.1 ID=mRNA_C-tenellus_contig9318.1.1|Name=mRNA_C-tenellus_contig9318.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=267bp|location=Sequence derived from alignment at C-tenellus_contig9318:119..397+ (Choristocarpus tenellus KU2346)
ATGACATGTAGGCAAGAAGGGGGATGGAGGGTGATCACGAGGGGCCAAGC
GACATGTGTCCTGAGGAGAATGGTAAAGGGACTTAAGTTAAGACGAGAAG
AGTATGCCGTGCACTCAGATAGGATAGGGGGAGTCACCAGATTGGCGAAC
ATGGGGGTAACAGAATTGGTAATACAGAGGGAGGGAAGATGGAAGTCGAG
GGCATTTATGGGATATGTAAGGGATAACCGGAGGGACCCAGTGTTAATGT
CAAAGGGCCTGGCAGAG
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