mRNA_C-tenellus_contig93.3.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig93.3.2
Unique NamemRNA_C-tenellus_contig93.3.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Match: A0A1Y2HQR5_9FUNG (Autophagy-related protein (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2HQR5_9FUNG)

HSP 1 Score: 159 bits (403), Expect = 7.680e-42
Identity = 75/113 (66.37%), Postives = 92/113 (81.42%), Query Frame = 2
Query: 3341 FKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPIDKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSEMYDAHRDEDGFLYINYSGENTFG 3679
            FKD+H  DKR+ EA+RIR+KYPDRIPVICE+   S I  IDKKKYLVP+DL++GQF++VIRKRI + P+K L +FV   T+  ++ALMS +YD HRDEDGFLYI YSGENTFG
Sbjct:    5 FKDEHQFDKRKQEADRIRLKYPDRIPVICEKAEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKALFIFVNNGTLPPSAALMSLIYDQHRDEDGFLYITYSGENTFG 117          
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Match: D7G2U5_ECTSI (Autophagy-related protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2U5_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 8.370e-42
Identity = 77/115 (66.96%), Postives = 94/115 (81.74%), Query Frame = 2
Query: 3335 IMFKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPIDKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSEMYDAHRDEDGFLYINYSGENTFG 3679
            + FK +H  DKR++EAERIR KYPDRIPVICE+   S I  IDKKKYLVP+DLS GQF++VIRKRI +DP+K + +FV  DT+ QTSALMS++Y+  +DEDGFLYI YSGENTFG
Sbjct:    2 VSFKQEHSADKRKSEAERIRAKYPDRIPVICEKADRSDIPDIDKKKYLVPADLSTGQFIYVIRKRIKLDPEKAIFIFVN-DTIPQTSALMSQVYEHQKDEDGFLYITYSGENTFG 115          
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Match: A0A316TWW6_9BASI (Autophagy-related protein n=3 Tax=Exobasidiomycetes TaxID=452283 RepID=A0A316TWW6_9BASI)

HSP 1 Score: 158 bits (399), Expect = 2.490e-41
Identity = 74/113 (65.49%), Postives = 95/113 (84.07%), Query Frame = 2
Query: 3341 FKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPIDKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSEMYDAHRDEDGFLYINYSGENTFG 3679
            FKD+HP +KR+AEAERIRVKYPDRIPVICE+   + I  IDKKKYLVPSDL++GQF++VIRKRI + P+K + +FV  + +  T+ALMS +Y+ H+DEDGFLY++YSGENTFG
Sbjct:    5 FKDEHPFEKRKAEAERIRVKYPDRIPVICEKADRTDIPTIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFVD-EVLPATAALMSAIYEEHKDEDGFLYVSYSGENTFG 116          
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Match: A0A420I8P5_9PEZI (Autophagy-related protein n=3 Tax=Golovinomyces TaxID=184027 RepID=A0A420I8P5_9PEZI)

HSP 1 Score: 157 bits (398), Expect = 3.620e-41
Identity = 75/113 (66.37%), Postives = 94/113 (83.19%), Query Frame = 2
Query: 3341 FKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPIDKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSEMYDAHRDEDGFLYINYSGENTFG 3679
            FKD+HP +KR+AEAERIR KY DRIPVICE+   S I PIDKKKYLVP+DLS+GQF++VIRKRI + P+K + +FV  + +  T+ALMS +Y+ H+DEDGFLYI+YSGENTFG
Sbjct:    5 FKDEHPFEKRKAEAERIRQKYVDRIPVICEKVEKSDIAPIDKKKYLVPADLSVGQFVYVIRKRIKLSPEKAIFIFVD-EVLPPTAALMSSIYEEHKDEDGFLYISYSGENTFG 116          
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Match: ATG8_MAGO7 (Autophagy-related protein 8 n=5 Tax=Pyricularia TaxID=48558 RepID=ATG8_MAGO7)

HSP 1 Score: 157 bits (398), Expect = 3.740e-41
Identity = 75/113 (66.37%), Postives = 94/113 (83.19%), Query Frame = 2
Query: 3341 FKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPIDKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSEMYDAHRDEDGFLYINYSGENTFG 3679
            FKD+HP +KR+AEAERIR KY DRIPVICE+   S I  IDKKKYLVP+DL++GQF++VIRKRI + P+K + +FV+ DT+  T+ALMS +Y+ H+DEDGFLYI YSGENTFG
Sbjct:    5 FKDEHPFEKRKAEAERIRQKYTDRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVQ-DTLPPTAALMSSIYELHKDEDGFLYITYSGENTFG 116          
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Match: J3NST1_GAET3 (Autophagy-related protein n=3 Tax=Magnaporthales TaxID=639021 RepID=J3NST1_GAET3)

HSP 1 Score: 157 bits (398), Expect = 3.740e-41
Identity = 75/113 (66.37%), Postives = 94/113 (83.19%), Query Frame = 2
Query: 3341 FKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPIDKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSEMYDAHRDEDGFLYINYSGENTFG 3679
            FKD+HP +KR+AEAERIR KY DRIPVICE+   S I  IDKKKYLVP+DL++GQF++VIRKRI + P+K + +FV+ DT+  T+ALMS +Y+ H+DEDGFLYI YSGENTFG
Sbjct:    5 FKDEHPFEKRKAEAERIRQKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVQ-DTLPPTAALMSSIYELHKDEDGFLYITYSGENTFG 116          
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Match: A0A0B7MQK1_9FUNG (Autophagy-related protein n=15 Tax=Eukaryota TaxID=2759 RepID=A0A0B7MQK1_9FUNG)

HSP 1 Score: 157 bits (397), Expect = 4.210e-41
Identity = 75/113 (66.37%), Postives = 93/113 (82.30%), Query Frame = 2
Query: 3341 FKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPIDKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSEMYDAHRDEDGFLYINYSGENTFG 3679
            FKD+HP DKR+AEAERIR KYP+RIPVICE+   S I  IDKKKYLVP+DL++GQF++VIRKRI + P+K + +FV  + +  T+ALMS +YD H+DEDGFLYI YSGENTFG
Sbjct:    5 FKDEHPFDKRKAEAERIRQKYPERIPVICEKVEKSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVN-EILPPTAALMSAIYDEHKDEDGFLYITYSGENTFG 116          
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Match: A0A7S1J899_9EUGL (Autophagy-related protein n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J899_9EUGL)

HSP 1 Score: 157 bits (398), Expect = 4.250e-41
Identity = 76/113 (67.26%), Postives = 95/113 (84.07%), Query Frame = 2
Query: 3341 FKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPIDKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSEMYDAHRDEDGFLYINYSGENTFG 3679
            FK+++ LDKR+AE+ERIR KYPDRIPVICE+  GS I  IDKKKYLVPSDLS+GQF++VIRKRI + P+K + LFV  + +  T+ALM+ +YD+H+DEDGFLYI YSGENTFG
Sbjct:   15 FKEENSLDKRKAESERIRQKYPDRIPVICEKAEGSDIPDIDKKKYLVPSDLSVGQFVYVIRKRIKLPPEKAVFLFVN-NALPPTAALMAHLYDSHKDEDGFLYIKYSGENTFG 126          
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Match: A0A0L0T956_ALLM3 (Autophagy-related protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0T956_ALLM3)

HSP 1 Score: 157 bits (398), Expect = 4.390e-41
Identity = 74/113 (65.49%), Postives = 91/113 (80.53%), Query Frame = 2
Query: 3341 FKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPIDKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSEMYDAHRDEDGFLYINYSGENTFG 3679
            FKD+HP +KR+ EA RIR KYPDRIPVICE+   S I  IDKKKYLVP+DL++GQF++VIRKRI + P+K L +FV   T+  ++ALMS +YD H+DEDGFLYI YSGENTFG
Sbjct:    5 FKDEHPFEKRKDEANRIRQKYPDRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIRLSPEKALFIFVNNGTLPPSAALMSLIYDQHKDEDGFLYITYSGENTFG 117          
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Match: A0A4U0WH85_9PEZI (Autophagy-related protein n=5 Tax=Dothideomycetes TaxID=147541 RepID=A0A4U0WH85_9PEZI)

HSP 1 Score: 157 bits (396), Expect = 6.120e-41
Identity = 75/116 (64.66%), Postives = 94/116 (81.03%), Query Frame = 2
Query: 3341 FKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPIDKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSEMYDAHRDEDGFLYINYSGENTFG*SC 3688
            FKD+HP +KR+AEAERIR KY DRIPVICE+   S I  IDKKKYLVP+DLS+GQF++VIRKRI + P+K + +FV  + +  T+ALMS +Y+ H+DEDGFLYI YSGENTFG +C
Sbjct:    5 FKDEHPFEKRKAEAERIRQKYSDRIPVICEKVEKSDIATIDKKKYLVPADLSVGQFVYVIRKRIKLSPEKAIFIFVD-EVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFGEAC 119          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig93.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y2HQR5_9FUNG7.680e-4266.37Autophagy-related protein (Fragment) n=1 Tax=Caten... [more]
D7G2U5_ECTSI8.370e-4266.96Autophagy-related protein n=2 Tax=Ectocarpus TaxID... [more]
A0A316TWW6_9BASI2.490e-4165.49Autophagy-related protein n=3 Tax=Exobasidiomycete... [more]
A0A420I8P5_9PEZI3.620e-4166.37Autophagy-related protein n=3 Tax=Golovinomyces Ta... [more]
ATG8_MAGO73.740e-4166.37Autophagy-related protein 8 n=5 Tax=Pyricularia Ta... [more]
J3NST1_GAET33.740e-4166.37Autophagy-related protein n=3 Tax=Magnaporthales T... [more]
A0A0B7MQK1_9FUNG4.210e-4166.37Autophagy-related protein n=15 Tax=Eukaryota TaxID... [more]
A0A7S1J899_9EUGL4.250e-4167.26Autophagy-related protein n=2 Tax=Eutreptiella gym... [more]
A0A0L0T956_ALLM34.390e-4165.49Autophagy-related protein n=2 Tax=Allomyces macrog... [more]
A0A4U0WH85_9PEZI6.120e-4164.66Autophagy-related protein n=5 Tax=Dothideomycetes ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig93contigC-tenellus_contig93:8089..15244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2U5
Preferred nameFMN1
PFAMsAtg8,FH2
Model size4663
Max annot lvl2759|Eukaryota
KEGG koko:K08341,ko:K10367,ko:K13335,ko:K16578
KEGG TC3.A.20.1,9.A.17.1
KEGG Pathwayko04068,ko04136,ko04137,ko04138,ko04139,ko04140,ko04146,ko04212,ko04371,ko04621,ko04727,ko05167,map04068,map04136,map04137,map04138,map04139,map04140,map04146,map04212,map04371,map04621,map04727,map05167
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000045,GO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000407,GO:0000421,GO:0000422,GO:0002790,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005776,GO:0005794,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006914,GO:0006950,GO:0006979,GO:0006995,GO:0006996,GO:0007005,GO:0007033,GO:0007034,GO:0007154,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008289,GO:0008429,GO:0009056,GO:0009267,GO:0009306,GO:0009405,GO:0009605,GO:0009653,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0012501,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016237,GO:0016239,GO:0016241,GO:0019222,GO:0019898,GO:0019899,GO:0019954,GO:0022411,GO:0022607,GO:0030154,GO:0030435,GO:0030436,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031386,GO:0031503,GO:0031667,GO:0031668,GO:0031669,GO:0031984,GO:0032258,GO:0032502,GO:0032781,GO:0032940,GO:0033036,GO:0033365,GO:0033554,GO:0034599,GO:0034613,GO:0034629,GO:0034727,GO:0042221,GO:0042594,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0043562,GO:0043934,GO:0043936,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0046903,GO:0046907,GO:0048102,GO:0048193,GO:0048518,GO:0048522,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051117,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0061024,GO:0061025,GO:0061709,GO:0061726,GO:0061912,GO:0061919,GO:0065007,GO:0065009,GO:0070727,GO:0070887,GO:0070925,GO:0071211,GO:0071496,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0098588,GO:0098791,GO:0098805,GO:0098852,GO:1903008,GO:1905037
Exons6
Evalue2.37e-49
EggNOG OGsKOG1654@1|root,KOG1654@2759|Eukaryota
Descriptioncellular response to nitrogen starvation
Cds size372
COG categoryS
BRITEko00000,ko00001,ko03029,ko03036,ko04121,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig93.3.2prot_C-tenellus_contig93.3.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig93 9070..10460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790169.2100432-UTR-C-tenellus_contig93:8088..90691680790169.2100432-UTR-C-tenellus_contig93:8088..9069Choristocarpus tenellus KU2346UTRC-tenellus_contig93 8089..9069 -
1680790169.2706695-UTR-C-tenellus_contig93:10460..116821680790169.2706695-UTR-C-tenellus_contig93:10460..11682Choristocarpus tenellus KU2346UTRC-tenellus_contig93 10461..11682 -
1680790169.2816648-UTR-C-tenellus_contig93:11950..120461680790169.2816648-UTR-C-tenellus_contig93:11950..12046Choristocarpus tenellus KU2346UTRC-tenellus_contig93 11951..12046 -
1680790169.2961376-UTR-C-tenellus_contig93:13252..152441680790169.2961376-UTR-C-tenellus_contig93:13252..15244Choristocarpus tenellus KU2346UTRC-tenellus_contig93 13253..15244 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790169.2228446-CDS-C-tenellus_contig93:9069..91581680790169.2228446-CDS-C-tenellus_contig93:9069..9158Choristocarpus tenellus KU2346CDSC-tenellus_contig93 9070..9158 -
1680790169.2328029-CDS-C-tenellus_contig93:9691..97841680790169.2328029-CDS-C-tenellus_contig93:9691..9784Choristocarpus tenellus KU2346CDSC-tenellus_contig93 9692..9784 -
1680790169.2428536-CDS-C-tenellus_contig93:10005..100871680790169.2428536-CDS-C-tenellus_contig93:10005..10087Choristocarpus tenellus KU2346CDSC-tenellus_contig93 10006..10087 -
1680790169.256668-CDS-C-tenellus_contig93:10352..104601680790169.256668-CDS-C-tenellus_contig93:10352..10460Choristocarpus tenellus KU2346CDSC-tenellus_contig93 10353..10460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig93.3.2

>prot_C-tenellus_contig93.3.2 ID=prot_C-tenellus_contig93.3.2|Name=mRNA_C-tenellus_contig93.3.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=124bp
MAPFQPTTIMFKDDHPLDKRRAEAERIRVKYPDRIPVICERTPGSYIYPI
DKKKYLVPSDLSMGQFMFVIRKRIAMDPDKGLHLFVKGDTMVQTSALMSE
MYDAHRDEDGFLYINYSGENTFG*
back to top

mRNA from alignment at C-tenellus_contig93:8089..15244-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig93.3.2 ID=mRNA_C-tenellus_contig93.3.2|Name=mRNA_C-tenellus_contig93.3.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=7156bp|location=Sequence derived from alignment at C-tenellus_contig93:8089..15244- (Choristocarpus tenellus KU2346)
ATCTGTCGCCTCCTTAGCAATGTCGAAATAGTAACATCAAGACTAGTAGA GGAACCAACATTGCTGTACGAGGCAGGCTCCAAGGTTGTAGATGAGACCC ATTGTTGTTGAAAATATGTTTTGTTCATGGTCAGGCGAGCTGAAAAGGTG GAATAGGCAAGAGTAGAGTGCAACTTTGACCAGTAACTGAAACCTTAGAT TTCTCTCCAATCTTGATGTTGTACTAGATTCTAGACTTGTCGAACAAGAT CGCCAAAGGTGCACTATCTGTGGCTAAACCTCGTGCACACTTACTTCAAA ACTTGACCAACACCCCTGCTTCCCCTTACAGAGGTTCCTTCGCTTGTCTA GCGGTGCTTCCGTCATAAATGCGGCGTATTGGACGATGTACACCACCATG ATCCAGAGTCATTTCCCTGGTACATACGCCTCCGAGCCGTGGGGGTAGGT ACTCTTTTGTCAAATGATGTATGTTGAGCTCAGTATCCAGCTATCTTTGA AGAGCCAGTTGCTTTCTATGGCTGGTTCCCATGCTGCCCTAAGCGTTTAT CATGATTTGCAGGACGACTGCGTGATACCTTATCCTGATTGAGGGGTAGT GGTTGCTAGAGCACTCCCCAGGGGTCCAGCCTCACTGGATTAAGCCACCT CCCCCGTTCACACTCACCCATAAAGTACTCACTAACTGAAGTGCCCCCGC ACCAGGTATGTAGGTCTCGCCGTGGCGGGTGTCACCTGCCTCGTCGCCAA GACTTTTGCGAATGTGGGTCTGTTTTGTGAGTTTAGGTGGTATATCCTTC TTGGCCGTAGATAGAAAGTTTATTAATGGAATCACTCAAGGAATCCACCG GACGTTACAGAATGTAGGTGTGATGAAAATGTTGTGGTTCAAAGCAATAT AGGGCATTTTCCTGTCTGAAGTTGGCTCTCTTAATTCGGGTTGGACACTT GCTTACTCTAAACCTTGAGTGTTTAACGTTGATCCCAACACTGTGCATGC TACCTGGAGAAGATTCGAGGGTCAACTTCAGAGGTAGAAAATAGGCATTT CCTTAGACATGTACACTTATGGAAACTGCCTAATGATGCCTACAGCATGA CATGCATCGTTTCACGTCTCTCCCCACCAACCTTGCCTATTCCCTCCTGA CGTTGTTGATGATGCAGCACTCGGTGGCTAAGATATCTTATATCCCGAAG CTTGATTCTCTAGCAATTTCCACTCATGCATTCTTTGGGGTGAGTCATCT CCACATCTGAGGCTATATAAATGCCGTCTGTGTGTGTGTAGACTTGTGAG GTTATCAGTTGTACAAACACGACAGAAGGACCTTCCAGGGATTGCCCGGG GATTGCCCAGGGATTGATGTGTTGCTCCCATTGAACTTGTGTATGGATCT TTGTCCATGTGTCCTCCACTCCTATTCCTGCATGATGACATGAAGGCGTA CATTGTATGGTGTACTAAATTATTTTCAGTTTTGCTTCCAAGAGATGTAG GTTGCATTCCTCCCCCCACTCAATGACTCCATTGGTTGATTAGTTCCGAG TATTTGTACCCCCCTGCCGGCAATTCAATGATGATACTATTGCACTGACA ATATTTTTGTGAAAGGGAGAGATGGATTCAACTAGGCGCAATGGATTTTG TTTTTTGTCCAATCTGGGTACACCGTCGTTGAGGTCTGTATGGTGAGGAG TAGAGAGTGGGTCAAGAGTGTGTGGCAATTAGAGCATCCCACTTCTCCCT GCTTGAAGTTGCACCACAACTTGTACTTCTGTGGGTGCTGTGGGTGCTGT ATGTAGGAAAGGGGGTACACCTAATATCCCTTTTCATTCCTTGTCCTAAA CTTATTTTATTGCCTCTCATTGATTGATCTGTATGCAATGTCATTGACCT TGAGACAGCAAGAGCAGGTGGCAAGGCTGGTAAAAATTGGAAGTACACAT CTTCCACCAACGAAAGAGGGGGCAATTTACATCCCTGTGAAGGCAAGAGT TTTTGTTTGGGGAAGGGAATAGAGATAGTGCATGTGGAGTGAGGTTTGGA GACTCTTGTCTTGGAAGAACTGTGGGATTCTTCCTAATTCTTTCTATTTG ATGCCGTTGCCCTTGCTATTGCCAGCTCTAAACTGGGGCGACTGTAGAGT GCAACCAAATTGACACTATTATGCTGTACACTCTGTTTATGTGTCTACTC CAGAGTGTTTCAGAGTGTAACATATTTGGTGGTGTAGCAGTTTTGGGAGG AATGTGCCAAATATGTGAGAACCCTGAGGAGTGACTTCATTATCCCTGCA CCAGTAGAAAGACTGCTCACTAGTGACTCTCCTATGTGGCCAATCAATGG GTGAAGTGTGGTACCAAGATGTCGCATGCCACAGAGTATTGATGTAATCA AATTGCCTCAAGTTTACTGCATTTCACCACCTAGTTTGTACGGTTAACAG TTGCAGAGAGTTGAAGGGACATGGATGTTGATGGGTGATTGAGTAAATGC AAGCGTGTATGCACAGTATTGCACTTGTCTCCAAGAAGAAGAGCATGGAA CATCCATGAGGTGTACTCCACTGTTTTATGTGCTCTGTGACCTCAAGTGG TATGCATATGTTTGATCCAGTGAACTGTGTTGACTGAAACACCAAATCAC TGTGAAGGTCACTGTGAAGGTCACTGTGAAGGTTAGCACACAATAGACGC CTTCCTCAGTACACGGGAACTCAGGACAACCATCCTCCACAATTTAGAAG AAATTGAAGCATGGGCAGGTAGTGAGTGACACCTAACTGTGCCGGCAGCA GTGCTGCTGTGGTGTGGGCTTGAATGGGGTTTGGCAAGATATCTTATCAT AGTCGTTTCAGTATCATTGTTGCTTTTTCAAGGGTATTGTAAACATCACA ATGCAGCATGGGCTAGAGTGTAAGTACAGTTTGTACTTCACCCCCTGTGC TGTCTGTTCAGAGTATGAATTTGTTGGGCTGGTCAGGTAGCTTGTGCATA CCTCTATACCCTTCTGGAGTATACCCTGTGATCCTTCCCACCGCAATATC CATCCCTCTCCCCTCATCCCTTCTGCGACCCTCCAAGCGTAAACGGCTCA CTTTCTCATGGTTCTGCTCAGTCGAGAATGGGATTTGTTCACTGGATTCT GCAGTCTGTGTTGTGCTCTAATTATCCCCCCTCCCCTCTTGCATTCAGGT GAAGGATGACCGGTGGTTCTCCCTGCTGGATAAGAACAACGGGACTTTCC ACAACCTAGATCTTCTCTTATCTCTTCTGTCAGGGGACAAGAATGTGAGC AATATACACAGGGGTTGCTGCACAAGCACCTAAGACTTTCTCGCACGCAT CAACCCCAACCAATACACCATGTGTCATAGAGACGTAGACACCTGGACAC ACCCATGTGTGTTCAGGCACCCATACCATCTACCTTTAGATTGTGAACTC ATTATACATATTTTGATTTGTTTTCGAGAACCATTGAGCCCCCTCCTCAC TCCTACAACGTCCAAGTGTGCCTCCTGACTAGCATGATCCATCTTTGTCC TACCCGTAACAGGCAGCAAGGGGGGAGGAAGCCACAGAAACGAAGACTGT TCAGAACCAAAAGGGGGGGAAAAGGAGGAGAGGAAGAGGAGGCAGGCCTG GGAATAGAAGTTGAATTCCGTATGATATTTTTGTCTCTGTTGTAGTAGTA TTCCTTAAATCAAATACAACCATGGACTAGAAACTCCCATGAGAGGAGCA TATACTTGCCTTTTTGCCTGATGGTGAAAGTCTTGTTCAGGACAGAAATC TTGACTTCTGGATTTGAGTCTGCTATTGTTTTGATTTGGTTGAATATGCT TGTCAGATCACATATTTCTGTGATTTTGACTCCGGTCCAGGAAGGTGGAG TGGACAAGGCCCTGCTGTCCTGGAGGTGAACATCAACTACAGAACTCCCA GTCTCAACTATTATTTGTGTAGTTGTAGGAGGTGTGGAACACGATTGCCC ATGACCTATTTCAGTCCAATAACCCGACCCAGATGCTCCAAGGAAGTAGC TACAAACCCTGCGTACTATGACTCCCCCATCTAAGAATAATAGTGCTGTA AGTGCATCATCTACTCCCAATGTTCATTTTTTTGTGATATGTTCTGTATA TGAGGATTTGGTGAAGTCGCATCTTGTCTATCACCAGTCGTTCATCTTTT GTTTGTAGGTTTCTATTTAACAGAACAGAGGAGAAGAGATGGGATGGTAG ACCTCCCAAGAATCGATCGCCTTGTTCATCACGTTTATTCCTCGTCGTAT ACATACATCATACATACCACGCACATGATGGATTATTTATTTAATCCATT GTGCAATTACTTGATCACTATCTCTCCCAAGCCCTCGACTCTGACCAAAC CTCTTCCTTGACAATGTTGGGTAGTGTGTGATTGGGGACTCGAGATTTTT TTTTTCTCCTACTCCCTTTTTGTTGCACAGTTCGATACTATTATTGTATA CATTATTATCAACACAATTATCTGATTGTCTCCTGTTCGTATGTTATTGT AATGAAGGATGGTGTTCTTCATACCCTTCCTACGTGTTTTGTGTAACAGA CAGTAGTATATTACCTGCAGTGGTATACCTTCGCACTTCTCCAACTCACC ATTCCTAACATATTTGTAGTGGTAAGAACATAGGAAACAAAAACCGTTTT ATGCGCGCGTTGTCCGTGCGGAAGGCGCGGTGAAGAGAGAGGGACCTACA CAGGTTGAAGATCACAAGCACTAGACAAGGGACAATGGCTCCATTCCAAC CCACTACAATCATGTTCAAAGATGATCATCCTCTTGATAAGAGAAGGGCT GAAGCGGAACGGATTCGGGTCAAATACCCTGATCGAATTCCCGTGAGTAC CAGCGAATCTTGACCCCCAACTTTTGTCTCTTGTCCTCACTAATCAACTA GACATACCTATCATCGATCCATCAGTTTCTGCATCATTGTCAATAAGCAC TCCATAATCCGGACACCTCAATGCCAACACTACACCTAGTTTTAACTTTC CGAAATATGCAATTTGTAAATGAAACCCACAACGAATCCAGTATGCAATG AAGTAAGACCCAAGATGCATAAACCTTTTCGCCCTACCAATTCCGGTGGC TGACCAGGTTATTTGCGAGCGAACACCAGGCAGCTATATATATCCAATAG ATAAGAAGAAATACCTTGTGCCATCCGACCTAAGCATGGGTGAGGAGTGA GAAGACGGGGGCAGGAGACGTTTTGTCCTTAGATGGAGTAGTCGCATCGC TGAATCGTACCAGATTCCTGGAAGACGTCTCCTATTTGACGAGGTTTCTG GTTGGTTAGTTCGGGATATTTATCTTCTTTTGACATGGGGTCTACTCATA CCTCCCATTGCACAACCAGCGGGAGATTAAACTTTTATCACGGTACTCTG TCACTTTCAGGTCAGTTTATGTTCGTCATACGAAAGCGCATCGCTATGGA CCCTGACAAGGGGCTCCATCTTTTCGTCAAAGGGGATACTATGGTGCAGA CATGTGAGTCAACCTGTTTTTCTCCAGAAATGTGATCCCTCGCCTTCGTT TCGAGTTGCTGTGCTGAGTATGTTGCACTGAACCGACTGGGGGTTGAAGG GTGCGGGGAGTTTGCGTTGACGGCTATGCACTGTTTGTCGAAGGTGGACT CAATGATAAATACCAAAAATGATTTTGAATCACTCAAGGTTGGTGGAGGT GCTCTTTGACTGAAGTCCTGGCTCCCCCTTACTTCCTGTCAGGGTCCTTG GTCAGGTGTAACACAAGCAAATAGGGCCCCTTTACTGCTCTGATATTTCT CTGATATATCACCAAATGATTTCTCTACATTCCCAAGTCCATATGAGTCT ATCACTTCCCCTGAAAATGTTGCCTTGAAGATTTCAATAATAAGTAGTTG TTAGCATGGTCTAGAACCCCTTTCTCTTGTGTTAAATGTTGGTTGATCGT CACCTCTTCCAGAGTGTAGTTCTGATCTTTTTCACCCACCCATCCTCTCT TGCTGCATGATAACGGGTTCATTTTATTGCGCTCAGCGGCTCTCATGTCA GAGATGTATGATGCCCACCGGGATGAGGACGGTTTCTTGTACATCAACTA TAGTGGGGAGAACACCTTCGGCTGAAGCTGTATATATAGTTTTCCATGTT CATATGTTAGTGGTTGGTACGATTTTGACTGTTGCTAATTTTATTTCTGC AAGCAGCTGTAGGATTGGGCTAGTATATTTGAAAATTTGGGAGCATGGAC ATAGTAACACTTCGATGAGAAGTGTTAAGAGGTACCTCCAAATCAGAGAG GCAACTGCCCAGAGTACGGGGGAAAGGGCATGACATCTTTTTAGTGGTAG ATATTGTGCAGACCCTAGATAAGCAGCAGGAATATGCCTGTGTATCGTGG AGGTGTTTTGTCCAACAAAGATATGATTGTGCTCAGCTTGGGTTCTTGTC CATGCCCTTATGTTAAGTGGGACATTTGCATCACCACAGAGAAGTTGGTA TTTTGTTGGTACTTGAGTTTGTGGGACGCCATTGATTCAGATGCTATGTT GGTACTTTTGTACATATTCAGGGCATTTTTTCTATGCCATTGACCTCAAG CAGGATTCTGTGAGTGTAGTAGAGTTTTGGGGGGACAGAAGGAAAGGTCA GGAGGGAAATAAGGGCAACAGCATATGTGTAGACACAACACCACTGACTT GTTATCAGTGCATGTTCTTGCCATTATCTCCCCCCACCCTTACCAGTTGG CTTAGGGAAGAAGGAAATATTATTGTGGACATTTGTACATTTTTATTTCT CTCCTTGAAACCAATGAGCAGAGCCTTGTGTTGCAGATAGCCTGAATCAG TGTGGGGCCTTGGGGCTTATTTTTGTGGCACTTTTTGCATTTTGGTAGAG ACATTGCAATGTCAACGCACCACTCTCTCAAACAGGTGAAATCATTGGCC ATATTAATTTTCAAGGATTTACGTAGTTGCAAGCACTAAAAAGAGAAGAA AAATTCAAAACGTTGCATACTCTGGCTGCCTGGAAGGCACCAGCAAATAA ATGCAGTGCGAATTCCACATAGGTTAGATATTCTAACTACCACTATGCAT CATGAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig93:8089..15244-

>mRNA_C-tenellus_contig93.3.2 ID=mRNA_C-tenellus_contig93.3.2|Name=mRNA_C-tenellus_contig93.3.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=372bp|location=Sequence derived from alignment at C-tenellus_contig93:8089..15244- (Choristocarpus tenellus KU2346)
ATGGCTCCATTCCAACCCACTACAATCATGTTCAAAGATGATCATCCTCT
TGATAAGAGAAGGGCTGAAGCGGAACGGATTCGGGTCAAATACCCTGATC
GAATTCCCGTTATTTGCGAGCGAACACCAGGCAGCTATATATATCCAATA
GATAAGAAGAAATACCTTGTGCCATCCGACCTAAGCATGGGTCAGTTTAT
GTTCGTCATACGAAAGCGCATCGCTATGGACCCTGACAAGGGGCTCCATC
TTTTCGTCAAAGGGGATACTATGGTGCAGACATCGGCTCTCATGTCAGAG
ATGTATGATGCCCACCGGGATGAGGACGGTTTCTTGTACATCAACTATAG
TGGGGAGAACACCTTCGGCTGA
back to top