mRNA_C-tenellus_contig9299.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9299.1.1
Unique NamemRNA_C-tenellus_contig9299.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Match: D7G384_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G384_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.320e-30
Identity = 49/70 (70.00%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 QGKKFLRGVIDEGFEVHEGTPGDFNLYIFAMSWKAEWCYHSSSPGCKAPREFWKDHLTIHGLWPDYGDGT 210
            +GK   RG+ +    V  GTPGDFNLYIFAMSWKAEWCYH + PGCK PR FW+ +LTIHGLWPDYGDGT
Sbjct:   65 EGKSDGRGIQELWRVVTGGTPGDFNLYIFAMSWKAEWCYHQNFPGCKKPRSFWEKNLTIHGLWPDYGDGT 134
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BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Match: A0A835YUF6_9STRA (Ribonuclease T2-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUF6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.420e-16
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   91 MSWKAEWCYHSSSPGCKAPREFWKDHLTIHGLWPDYGDGT 210
            MSWK +WCYH+  PGC  PR +W+ H+T+HG+WPDYGDGT
Sbjct:    1 MSWKPQWCYHTDEPGCFKPRPYWRTHMTMHGVWPDYGDGT 40
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BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Match: A0A5D6XQJ0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQJ0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.290e-13
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   58 TPGDFNLYIFAMSWKAEWCYHSSS--PGCKAPREFWKDHLTIHGLWPDYGDGT 210
             P  F LY+ A SW+  +C H  +  PGC+APREFW+ H T+HGLWP++  G+
Sbjct:   28 APAPFELYVLAQSWQPAFCLHRETEFPGCRAPREFWRTHFTLHGLWPEHEAGS 80
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BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Match: F0WIG3_9STRA (Uncharacterized protein AlNc14C110G6363 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WIG3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.350e-12
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   46 VHEGTPGDFNLYIFAMSWKAEWC--YHSSSPGCKAPREFWKDHLTIHGLWPDYGDG 207
            +   T  D++LYIF+ SW+ E+C  + +  PGC  P+ +WK H+T+HGLWP+Y +G
Sbjct:   52 IQNDTKKDYDLYIFSQSWQPEFCAGFQNVYPGCHDPQPYWKTHMTLHGLWPEYQNG 107
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BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Match: A0A024GFJ3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GFJ3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.400e-12
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   55 GTPGDFNLYIFAMSWKAEWC--YHSSSPGCKAPREFWKDHLTIHGLWPDYGDG 207
            G   DF+LYIF+ SW+ E+C  + +  PGC  P+ +WK H+T+HGLWP+Y +G
Sbjct:   59 GEKKDFDLYIFSQSWQPEFCAGFQTVYPGCHDPQPYWKTHMTLHGLWPEYQNG 111
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BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Match: A0A7S1G0H8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G0H8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.050e-10
Identity = 28/62 (45.16%), Postives = 36/62 (58.06%), Query Frame = 1 
Query:   58 TPGDFNLYIFAMSWKAEWCYHSSS-----------PGCKAPREFWKDHLTIHGLWPDYGDGT 210
            +P DF+ YI++MS++ E+C H S            PGC  P   W+  LTIHGLWP Y DGT
Sbjct:   48 SPPDFDYYIYSMSFQPEFCRHHSGCSFDKESSEVYPGCMDPDPIWRYSLTIHGLWPQYTDGT 109
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BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Match: A0A7S2V600_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V600_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 8.560e-10
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:   55 GTPGDFNLYIFAMSWKAEWCY--HSSSPGCKAPREFWKDHLTIHGLWPDYGDG 207
            G   D   Y+ A SW+ E+C   +   PGC+ P  FW++ LTIHGLWP Y DG
Sbjct:   59 GGADDQEFYLLATSWQPEFCAGNYQHYPGCQDPLPFWRESLTIHGLWPQYEDG 111
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BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Match: A0A7S0C0W1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0W1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.920e-9
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   73 NLYIFAMSWKAEWCYHSSS---PGCKAPREFWKDHLTIHGLWPDYGDGT 210
            N+++F+MS++ E+CY       PGC  P   WK  LTIHGLWP++ DG+
Sbjct:   41 NMFVFSMSYQPEFCYQHRKDGYPGCLNPNPIWKSSLTIHGLWPEFTDGS 89
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BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Match: A0A2D4BZI7_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZI7_PYTIN)

HSP 1 Score: 61.2 bits (147), Expect = 2.000e-9
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   70 FNLYIFAMSWKAEWCYHSSS--PGCKAPREFWKDHLTIHGLWPD 195
            F+ Y+ A+SW+ E+C+      PGC  PR+FW+ H T+HGLWP+
Sbjct:   64 FDFYVLAVSWQPEFCHGKEQEYPGCVKPRDFWRSHFTLHGLWPE 107
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BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Match: A0A8J4S6D1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A8J4S6D1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.520e-9
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   61 PGDFNLYIFAMSWKAEWCYHSSS--PGCKAPREFWKDHLTIHGLWPD 195
            P  F++Y+ A SW+  +C+      PGC  P++FW+ HLT+HGLWP+
Sbjct:   42 PKAFDMYVLAQSWQPAFCHGKERQYPGCTKPQDFWRSHLTLHGLWPE 88
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9299.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7G384_ECTSI1.320e-3070.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUF6_9STRA1.420e-1665.00Ribonuclease T2-like protein n=1 Tax=Tribonema min... [more]
A0A5D6XQJ0_9STRA2.290e-1349.06Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
F0WIG3_9STRA1.350e-1244.64Uncharacterized protein AlNc14C110G6363 n=1 Tax=Al... [more]
A0A024GFJ3_9STRA1.400e-1249.06Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7S1G0H8_9STRA3.050e-1045.16Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2V600_9STRA8.560e-1047.17Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S0C0W1_9STRA1.920e-946.94Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A2D4BZI7_PYTIN2.000e-947.73Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A8J4S6D1_9STRA3.520e-944.68Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9299contigC-tenellus_contig9299:3476..5764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G384
Preferred nameRNY1
PFAMsRibonuclease_T2
Model size213
Max annot lvl2759|Eukaryota
KEGG koko:K01166,ko:K07870,ko:K14430
KEGG TC2.A.47.2
KEGG Pathwayko04137,ko04214,map04137,map04214
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000902,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005775,GO:0005829,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0006915,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009653,GO:0009987,GO:0012501,GO:0016043,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0031974,GO:0032502,GO:0032989,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048856,GO:0048869,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575
Exons2
Evalue2.17e-31
EggNOG OGsKOG1642@1|root,KOG1642@2759|Eukaryota
Ec32 ortholog descriptionRibonuclease T2-like
Ec32 orthologEc-03_004910.1
EC3.1.27.1
Descriptionribonuclease T2 activity
Cds size213
COG categoryS
BRITEko00000,ko00001,ko01000,ko02000,ko03016,ko03029,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790168.9793363-CDS-C-tenellus_contig9299:3475..35851680790168.9793363-CDS-C-tenellus_contig9299:3475..3585Choristocarpus tenellus KU2346CDSC-tenellus_contig9299 3476..3585 +
1680790168.997665-CDS-C-tenellus_contig9299:5661..57641680790168.997665-CDS-C-tenellus_contig9299:5661..5764Choristocarpus tenellus KU2346CDSC-tenellus_contig9299 5662..5764 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9299.1.1prot_C-tenellus_contig9299.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9299 3476..5764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9299.1.1

>prot_C-tenellus_contig9299.1.1 ID=prot_C-tenellus_contig9299.1.1|Name=mRNA_C-tenellus_contig9299.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=71bp
QGKKFLRGVIDEGFEVHEGTPGDFNLYIFAMSWKAEWCYHSSSPGCKAPR
EFWKDHLTIHGLWPDYGDGT*
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mRNA from alignment at C-tenellus_contig9299:3476..5764+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9299.1.1 ID=mRNA_C-tenellus_contig9299.1.1|Name=mRNA_C-tenellus_contig9299.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2289bp|location=Sequence derived from alignment at C-tenellus_contig9299:3476..5764+ (Choristocarpus tenellus KU2346)
CAGGGGAAGAAATTTCTGAGGGGAGTTATTGATGAAGGATTCGAGGTTCA
CGAAGGCACTCCAGGAGACTTCAACCTGTACATATTTGCCATGAGTTGGA
AGGCGGAATGGTGAGATTTTTTCTTCGTTCGCACGCGCGGGGCGGGGGGC
GGGAGGGGGTTGTCAAGATATCTGTTTGAACACCCATGTAGTGTTTACTA
GTTTAGCTGTTAATGTGACGCGTTAAGGTGAGTAGTATATTGATCGCGCT
CGTATACAATCATGTACCTAGGATCTAGGGTTATTGACGAAAATGGAATA
CAGAGATCGATTACTGAAAGGATAGAGTGACTCCGACCTGGACTGCTTCC
CCATTGTTGATGGAGATCACAACTTCCCAATGTTTAGATATAGATATTAG
GACTCGAAGTAGATTCTATTTGCAATAATGACAAGCCAGGGCGTTGAGAG
GTCTGCCTACATTATTGTACCAGTTAATCTCGGACATGTAAACCGCAGTT
ACTGGCTACGATATTGTTGTAGAGTTTATTCCTTACTTCCAGTATATTTA
TCGTTTGTGATTCACATACCTCCAGATCTCGACATTTCCGCTAATATTTT
TGATCAAAAACTACGTCGTTTGTGCAACACACTTTTCCAAGTGTGCCATT
CATGCTGCAGTAGATCAAGCCACCCATCGTTACCAACATCAATGTGAAAG
GTGCAAATGCCTTCCCTATTCAGAAGGAGGAGTAGCCAAGGTCAAAGGAA
CAGTATTCAGCTTGTAGAAAAATCCCAAAACACCCCACCTCACCAAAGTG
GGATATCACCTCCAGGCTTTCTGGACGTTGTGATTCCTTTTGCGTGATAG
GAGTGGATGCTGATATTATTGAATCCATGAGGCGTTGCTATTGGTGAAAG
CATGTGCATGGGTTTCAAATACGGTCATACTGGTGCGCATCCCAAACTAT
GAAACCCACGTTAAAGTTCTGTAACATTGGATTGGTCAAATTCGAATTCT
GTGCAGGAGAAATCGACAATCCCTACTCCCCTGATATTGATTGCACGGGC
TGAATCTCTACCGTACCTTCATTTGTCACACTTATAATGTACACTTTACC
GCTATACCCTGTCATGCACACTACCAAAGTACGTACTACGTAGTACCACC
TTTTTTTTTCCAAGATTCTTTTTTGCTGTAGGGTTAGGGTTGAAATTCAT
TCATTACCTTCACCTCTGCAACAGCATAGTGGCCGATCTCCTTGGCTTCA
ACTGGACCCGATGACTGTTCATGCAGTTGCTTGGGACCTATTGCTCCCAC
TGCGGTGTAGAGACTGAAAAATGGGTGTAACGTGTAACTGCTGTAACTGC
CATCAGAAAAAAAAGAAAGAAGACAACAGATCTCCTTCACCGTAGTCTCG
CTGCGATGTTGAAAAGAATAAAAAAAATTGACGTTACAACAATCTCGGCT
CACGACATTGAAATGTAGAACCTTAACTCTTTTTAACTCTTTTTTTTTTA
GACAAGTTGATGTGTGTGTGTGTTTGTTTTTTTTTAATAATGCCGTAACA
AAGTCAGCTGCGCGTGTCGGATTACAATTACAGAAAGGTTGCGATGATAC
TGCCATGTTTCACGTGATACTGTTCTAATATTCACAGTGATACTGTTCTG
ATAACATGCGAACACGCTAGTTCCTGCCACATCATGCGCCTACGATGCAA
CAACGATTTGATCTCTCCAATACACAATCGCTCGGGAGAGAAAAAAAAAA
AATTGAATGCAGAAGAGGGTATTCATATTCTCACCGTTGAAAATAACGCC
TCCGTATCGCTCTGTAGAGATTTTTTTCTTGAGCTCGACCAATCCGATGC
ACCGGCTACGTTAATGTTAATGTTGTTTTGTTTTGTTTTGTTTTTTTCAT
AGTACTTTCGGAGACTGATCGTCGCGCCTGCTCGCCATTTTTATGTTCTG
AAACTGAACCGAACGGTGTTTTTTTTTTAATTAACTACTTCTTCTCACTT
CTGCAACCGTAATATCACGGTGGAAAAAAAAGAAGAGTGGTTCGTGATTA
CTCTGTAGCGCTACGGAGCGATACAAGGGAAGGACGTCAATGCTACGGTG
GTGCTACGGTAGTGCGACAAGGTCTCTAAAAAATGTCTGATTTTTTTTGT
TTGTTTTTAACACGAAATGGGAACGAACACGCTCAGGTGCTACCACTCAT
CGTCCCCCGGATGCAAGGCGCCTAGAGAGTTTTGGAAGGATCATCTTACC
ATCCATGGACTGTGGCCTGACTACGGAGATGGAACGTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig9299:3476..5764+

>mRNA_C-tenellus_contig9299.1.1 ID=mRNA_C-tenellus_contig9299.1.1|Name=mRNA_C-tenellus_contig9299.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=213bp|location=Sequence derived from alignment at C-tenellus_contig9299:3476..5764+ (Choristocarpus tenellus KU2346)
CAGGGGAAGAAATTTCTGAGGGGAGTTATTGATGAAGGATTCGAGGTTCA
CGAAGGCACTCCAGGAGACTTCAACCTGTACATATTTGCCATGAGTTGGA
AGGCGGAATGGTGCTACCACTCATCGTCCCCCGGATGCAAGGCGCCTAGA
GAGTTTTGGAAGGATCATCTTACCATCCATGGACTGTGGCCTGACTACGG
AGATGGAACGTGA
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