mRNA_C-tenellus_contig929.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig929.1.1
Unique NamemRNA_C-tenellus_contig929.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Match: A0A4Q5ZUK8_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Myxococcaceae bacterium TaxID=2484252 RepID=A0A4Q5ZUK8_9DELT)

HSP 1 Score: 124 bits (310), Expect = 3.120e-31
Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAGMQAMAVSAGLWHTCALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLGSDSTGAAHSA 315
            C+G ND GQLG+GD  SRG     +GDALP+VD GAG++A AV+AG WHTCALLE G  +CWG N +G LG GD V  G  P +MGD L  +DLG+ +T  A SA
Sbjct:   61 CWGQNDRGQLGLGDTISRGDKTGQMGDALPAVDLGAGIEATAVAAGFWHTCALLEGGKARCWGENIYGTLGTGDNVSHGAKPGEMGDALPFVDLGTGATIKALSA 165
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BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Match: A0A6I3AX41_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A6I3AX41_9ACTN)

HSP 1 Score: 122 bits (306), Expect = 3.230e-30
Identity = 57/112 (50.89%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:    1 CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAGMQAMAVSAGLWHTCALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLGSD------STGAAHSAV 318
            C+G N+ G+LG GD  +RG +   +GD LP+VD G G  A A++AG+WHTCA+L+  TVKCWG+N+HGELG GDT  RG +  +MGDNL  +DLG+       S+   HS V
Sbjct:  227 CWGLNEIGELGYGDTDNRGDNASEMGDNLPTVDLGTGRTAKAINAGMWHTCAILDNDTVKCWGKNDHGELGLGDTSHRGDNASEMGDNLPTVDLGTGRIAKVMSSAGVHSCV 338
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BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Match: A0A3M1N8Z3_9BACT (T9SS C-terminal target domain-containing protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1N8Z3_9BACT)

HSP 1 Score: 120 bits (300), Expect = 3.890e-30
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:    1 CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAGMQAMAVSAGLWHTCALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLGS 288
            C+G  D+GQLG GD + RG     +GD LP +D GAG  A+A++AG +H CALL+ G+VKCWG N++G+LGQGDT  RG  P +MGDNL PIDLG+
Sbjct:  115 CWGEGDYGQLGQGDTAHRGDDPGEMGDNLPPIDLGAGRTAIAIAAGSFHACALLDDGSVKCWGANDYGQLGQGDTNYRGDDPGEMGDNLPPIDLGA 210
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BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Match: A0A835T094_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T094_9CHLO)

HSP 1 Score: 122 bits (305), Expect = 6.360e-30
Identity = 58/105 (55.24%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAGMQAMAVSAGLWHTCALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLGSDSTGAAHSA 315
            C+G ND+G LG+GD S RG+ +  +GD LP+V  G G  A A+SAG WHTCALL+ G+VKCWG N+ G+LG GDT PRG  P +MGD L  + LG+  T  A SA
Sbjct: 1590 CWGYNDYGYLGLGDTSRRGNELGEMGDRLPAVALGTGRTATAISAGGWHTCALLDNGSVKCWGWNQFGQLGLGDTSPRGDGPGEMGDTLPAVALGTGRTATAISA 1694
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BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Match: D7FZ17_ECTSI (Domain repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ17_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.290e-28
Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAGMQAMAVSAGLWHTCALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLGSDSTG 300
            CFG N  G+LG+GD  +RG     +GD LP VD G G  A+AVSAG  HTCALLE G+VKCWGRN+ G+LG+GD + RG  P  MG+NLT +DLG+  +G
Sbjct:   50 CFGYNKNGELGLGDAETRGDESGEMGDLLPDVDLGTGAVAIAVSAGWQHTCALLEGGSVKCWGRNDWGQLGKGDFLDRGDDPATMGNNLTAVDLGTAPSG 149
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BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Match: A0A6H5L5B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B3_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.860e-28
Identity = 57/100 (57.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAGMQAMAVSAGLWHTCALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLGSDSTG 300
            CFG N  G+LG+GD  +RG     +GD LP VD G G  A+AVSAG  HTCALLE G VKCWGRN+ G+LG+GD + RG  P  MG+NLT +DLG+  +G
Sbjct:   88 CFGYNKNGELGLGDTETRGDESGEMGDLLPEVDLGTGAVAIAVSAGWQHTCALLEGGIVKCWGRNDWGQLGKGDFLDRGDDPATMGNNLTAVDLGTAPSG 187
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BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Match: A0A7S0U564_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U564_HEMAN)

HSP 1 Score: 109 bits (273), Expect = 5.200e-28
Identity = 58/113 (51.33%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAG-MQAMAVSAGLWHTCALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLGSD------STGAAHSAV 318
            C+G+N +GQLGVGD   RG S + +GDALP VD G G M  ++VS+G  H+CALLE+G VKCWG+N+ G+LG GD V RG +   MGD L  +D G D        G +HS V
Sbjct:    1 CWGDNSYGQLGVGDADQRGGSSDGMGDALPFVDLGGGGMGVLSVSSGHQHSCALLESGGVKCWGQNDLGQLGLGDVVGRGQTGQTMGDALPFVDFGGDRRVLWLDAGHSHSCV 113
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BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Match: A0A840I6P4_9ACTN (Alpha-tubulin suppressor-like RCC1 family protein/outer membrane protein OmpA-like peptidoglycan-associated protein n=1 Tax=Conexibacter arvalis TaxID=912552 RepID=A0A840I6P4_9ACTN)

HSP 1 Score: 116 bits (290), Expect = 6.620e-28
Identity = 59/105 (56.19%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAGMQAMAVSAGLWHTCALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLGSDSTGAAHSA 315
            C+G N  GQLG GD ++RG     LGDALP VD G+G  A A++ G  H+CALL  GTVKCWG N  G+LG GDT PRG  P ++GD L P+DLGS  T  A SA
Sbjct:  601 CWGANASGQLGQGDRAARGGQPGELGDALPPVDLGSGATATAIATGSHHSCALLADGTVKCWGDNGSGQLGLGDTEPRGDQPGELGDALPPVDLGSRRTAVAVSA 705
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BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Match: A0A0K1EHQ6_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EHQ6_CHOCO)

HSP 1 Score: 106 bits (265), Expect = 9.700e-28
Identity = 53/97 (54.64%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    1 CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAGMQAMAVSAGLWHTCALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLGSD 291
            C+G ND+GQLG+GD   RG     +GD+LP+V+ G G  A+A+ AG  HTCA L  GTVKCWG N+H +LG GDT  RG S   MGDNL  + L SD
Sbjct:   10 CWGYNDYGQLGLGDMEWRGDRPGEMGDSLPAVNLGTGKTAVALMAGGSHTCASLNDGTVKCWGSNDHDQLGLGDTDARGTSASHMGDNLPTVKLYSD 106
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BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Match: A0A7S0Z2W9_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2W9_9CRYP)

HSP 1 Score: 115 bits (287), Expect = 1.280e-27
Identity = 56/109 (51.38%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    1 CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAGMQAMAVSAGLWHTCALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLG-----SDSTGAAHS 312
            C+G+N +GQLG+GD++ RGS    +GDALP+VD GAG  A++VS G +H+C +L+  +VKCWG N HG+LG GD V RG    +MGD+L  +DLG     S STG  H+
Sbjct:   63 CWGDNRYGQLGLGDSTGRGSHPSDMGDALPAVDLGAGRTAVSVSCGYYHSCVVLDDASVKCWGDNAHGQLGLGDAVGRGDGSSEMGDDLPGVDLGGRTAVSVSTGERHT 171
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig929.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Q5ZUK8_9DELT3.120e-3157.14Uncharacterized protein (Fragment) n=1 Tax=Myxococ... [more]
A0A6I3AX41_9ACTN3.230e-3050.89Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A3M1N8Z3_9BACT3.890e-3057.29T9SS C-terminal target domain-containing protein (... [more]
A0A835T094_9CHLO6.360e-3055.24Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
D7FZ17_ECTSI1.290e-2857.00Domain repeat protein n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5L5B3_9PHAE1.860e-2857.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0U564_HEMAN5.200e-2851.33Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A840I6P4_9ACTN6.620e-2856.19Alpha-tubulin suppressor-like RCC1 family protein/... [more]
A0A0K1EHQ6_CHOCO9.700e-2854.64Uncharacterized protein n=1 Tax=Chondromyces croca... [more]
A0A7S0Z2W9_9CRYP1.280e-2751.38Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig929contigC-tenellus_contig929:2015..4326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FZ17
Preferred nameRCCD1
PFAMsRCC1,RCC1_2
Model size335
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Exons2
Evalue2.12e-29
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Descriptionguanyl-nucleotide exchange factor activity
Cds size333
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790168.3615835-CDS-C-tenellus_contig929:2014..22011680790168.3615835-CDS-C-tenellus_contig929:2014..2201Choristocarpus tenellus KU2346CDSC-tenellus_contig929 2015..2201 +
1680790168.3740523-CDS-C-tenellus_contig929:4179..43251680790168.3740523-CDS-C-tenellus_contig929:4179..4325Choristocarpus tenellus KU2346CDSC-tenellus_contig929 4180..4325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig929.1.1prot_C-tenellus_contig929.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig929 2015..4325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig929.1.1

>prot_C-tenellus_contig929.1.1 ID=prot_C-tenellus_contig929.1.1|Name=mRNA_C-tenellus_contig929.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=111bp
CFGNNDWGQLGVGDNSSRGSSIELLGDALPSVDFGAGMQAMAVSAGLWHT
CALLETGTVKCWGRNEHGELGQGDTVPRGLSPLDMGDNLTPIDLGSDSTG
AAHSAVQVVAG
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mRNA from alignment at C-tenellus_contig929:2015..4326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig929.1.1 ID=mRNA_C-tenellus_contig929.1.1|Name=mRNA_C-tenellus_contig929.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2312bp|location=Sequence derived from alignment at C-tenellus_contig929:2015..4326+ (Choristocarpus tenellus KU2346)
TGTTTTGGCAATAATGACTGGGGCCAACTTGGAGTTGGGGACAATTCATC
TCGGGGCAGTAGCATCGAACTATTGGGAGATGCCCTCCCGAGCGTGGACT
TCGGGGCTGGGATGCAGGCAATGGCAGTATCAGCTGGGCTATGGCATACG
TGTGCTTTGCTGGAAACTGGGACAGTTAAATGTTGGGGTGAGCACAACTC
CCTCTCACTACTGTTGATGTTATAGACAAGAGCCTGGGCTGAGGATTGCA
CGCTGAAAATCAGGATCTACATTCATGGGATGGCTTAGATCTGTTACATA
GAGCCAATAGTATTGTGCAGTTTTAGGGTGACAATACTCTGATAAAGTAA
TAGCAAAAGTCAAAGGTACAGCTAAGAGGTAATGTGAAGGAGCATGGTGC
CATGATATGACAGGGAGAATATTTCATTTAGCACCAGTAGAATGTTGGTT
GGAGAGGGGGTGCCTCAATGTAGAGGATTAGGGATTTATTTAGCACGTTT
GTCTAATGGTATATTATTGGTTGTCCTGTGGTGGTAGATTTACTTAAGAA
TGAAAAGACGACAAGAGGGAAGTTGGGTTAAGGTCTCATTGAACCTTGTG
CAAAATATATACTGTGCTCATGCTTGACATGCACCCAACCTCCGTTAGGA
GGGTAAGGTTGTAATGGAGAAGCTCAGTTGTCAATGTTGGGAAAAAGTGG
CCTTCACAGTGGTTAAAGAGACATTTACCACAAGGTATTCATAGCAATAC
CTAACACCGAACAGCAACCCCCTCTTAGATGATATCATTCTTGACCCATA
GGATGGAGAGGGTGAAGACAGCAGCTCTTCTATGCATGTTTTGGTGGTAC
TGTGGCTCTGAATAGTACGCTTTCCTTGCAGCAGTCTTAAAATTAGCTTG
AAAATCTTGATTTCCAATGAAACAGTATGTGCGCTGAACACTACCTGTAC
TAAGGAGTGTTCCACTGGAGGGGTTGTGACATATTTCTTACCATGCCAAT
TATGGTGTCAATATTTGATGTTTATTTTCATCAAACCCCTTTGCGTAAAT
GTTGAAATCAGAGTTCTTACCATTTTCCCTGTTGTCGGGGCTAAATGAAA
GGCACATGTATTAAATCCTTCATCGCATTCCATGCATAACAGGCGGTACT
GGAAGGCACTTCTACCCACATTGATAGTTTTGATCACCTCTAGTGGACTT
CATATAATATCACATAGTGCTTTCAAAGTCATACAGCCACTATTTACTTT
TCCCATGGGGTTGGGATTCTGGAAAGAACTTTCTGAATACTGATCCCTAA
CCAAAAACCCTAACCCTATTAACATTCGCTCGACTCCCATTTCTTGTTAG
TCCAAGCTGCCATACTCCCACCAATTTGTAACCTCTGTTTCCTTTTTTTT
TCCTATATCAGTCACACTCTCCTTTCATACTGCCTTTACTATATTCTGGG
ACTAACCTGATCCGTGGTCAGAGGCACTGCACACACAAACACAAATTCTT
CTACTAACCTGTTGCCCTAGGACTAATTGCACTGACTTCATTTATGCCCT
GCTTTTTGTGCAATGACTTGAGCCAGTCCAGCAATTGTTAAGGGGATTTC
TACTTTCTCCAATCCCGTGCCGGACTGATTCCAGTGGTCATGTCAGTTGC
CATGAAGCCTCCTTGCTACCTCATTTTCATCGTATTGTTATTATTGTTTT
TTGTCACTAGGCAACAGGTAGCATAATACTGGTGTACAGTACATCATGCT
CACCATGTTGAGTTTGGACAATCAAAACTAGATTTCCACAAAAATAGGTG
TAATATCCAAGAGGTTCAAACCCCAAATTCATGCAGGGAACAGTCTCCGT
TAGGCACTGAACCATGAAGACCTTTCCTGAAAATATGTACCAAGAGTTGA
TAGCTCCTACAAAATATATTGTATAGAGCTGCATCAGTCTCCCCCCTTCC
ACAGCTCAATCCTAACTCCATCGGTGTTATGCCAAGATATATTATGTACC
AATATTTATGGGGCAGTGGACATTGCTTGAAAAGCAGCATTTGCAGTAAC
AGACTCATGTAATATCCAGTCAATAAGGTGTAATAATGCCATTATATCTT
CAATGCAGCAAGAACTCAGCCCTTAACTTTCACGACCTTGACCACAACCC
TAAACCTAATCTAAGGTCGTAATGAACATGGGGAGCTTGGACAGGGGGAC
ACTGTGCCACGGGGCTTGTCGCCTCTTGACATGGGAGACAATCTCACCCC
CATTGACTTGGGCTCAGACTCTACTGGGGCAGCACATAGTGCTGTTCAGG
TTGTGGCTGGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig929:2015..4326+

>mRNA_C-tenellus_contig929.1.1 ID=mRNA_C-tenellus_contig929.1.1|Name=mRNA_C-tenellus_contig929.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=333bp|location=Sequence derived from alignment at C-tenellus_contig929:2015..4326+ (Choristocarpus tenellus KU2346)
TGTTTTGGCAATAATGACTGGGGCCAACTTGGAGTTGGGGACAATTCATC
TCGGGGCAGTAGCATCGAACTATTGGGAGATGCCCTCCCGAGCGTGGACT
TCGGGGCTGGGATGCAGGCAATGGCAGTATCAGCTGGGCTATGGCATACG
TGTGCTTTGCTGGAAACTGGGACAGTTAAATGTTGGGGTCGTAATGAACA
TGGGGAGCTTGGACAGGGGGACACTGTGCCACGGGGCTTGTCGCCTCTTG
ACATGGGAGACAATCTCACCCCCATTGACTTGGGCTCAGACTCTACTGGG
GCAGCACATAGTGCTGTTCAGGTTGTGGCTGGA
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