mRNA_C-tenellus_contig9283.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9283.1.1
Unique NamemRNA_C-tenellus_contig9283.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig9283.1.1 vs. uniprot
Match: D7G3N1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3N1_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 1.040e-55
Identity = 113/300 (37.67%), Postives = 164/300 (54.67%), Query Frame = 1 
Query:    1 HVQLILDKSFTVSPSSCAGGVCRKELIGGGEVFGLGKYE-CTKRIQ--SVEPNRYLAAPT-ENLFELAYYCK----DADGVVLETAGECK--ATVCLDASTDPNLQDITYQLAFE--GLTEEVEVVVKLYFNYMDVEESLSP-----IVTCPLQENCHRKCTAGEALFETVLTDEVGDGWNSGALGRYDHFSLDAKVAGGEIIESV----------------------YLNSLLGGKNRTVPLCLADGQYLFSTDFLSP-------RYD--GGTPYESNWFFCGSQGILSEYVYVNILDG 756
            H QL+++++F +  SSC G  CRKE+IG  E  G+G  E C+        + ++ L APT + LFEL Y C+    D + VVL +  EC   A  C+DA T+P + ++TYQ+AFE    + +V V VKLYFNY+   +          V C L E CHR+C +GE  F   L D +GDGWN+G +  +DHF L+++      + ++                      YLN++LGG  RTVPLCL++G+YLFST F +P        +D  G    ES W FCG +G L++Y +V + +G
Sbjct:   12 HSQLVMEQTFYMETSSCEGVSCRKEIIGANETLGVGAVEECSHNTTYWHEDLDQRLPAPTGKQLFELVYSCRKHGPDGEEVVLTSLEECGMVAEPCVDAGTNPGISEVTYQVAFEFEAQSYDVSVDVKLYFNYLKAGDKFHAKRSENAVRCLLSETCHRRCESGEWGFPAELRDSMGDGWNAGGINLFDHFRLESRSELTAEVSAMMSSDXXXXXXXXXXXXXXRRTSYLNTMLGGSARTVPLCLSEGEYLFSTQFHTPGPGDPSHAFDVAGRLFSESTWTFCGHEGTLADYTHVRVNNG 311
[Close]
BLAST of mRNA_C-tenellus_contig9283.1.1 vs. uniprot
Match: A0A6H5KHK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHK1_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 2.070e-51
Identity = 111/296 (37.50%), Postives = 158/296 (53.38%), Query Frame = 1 
Query:    1 HVQLILDKSFTVSPSSCAGGVCRKELIGGGEVFGLGKYE-CTKRIQSVEPNRYLAAPT-ENLFELAYYCK----DADGVVLETAGECK--ATVCLDASTDPNLQDITYQLAFEGLTE--EVEVVVKLYFNYMDVEESLSP-----IVTCPLQENCHRKCTAGEALFETVLTDEVGDGWNSGALGRYDHFSLDAKVAGGEIIESV--------------------YLNSLLGGKNRTVPLCLADGQYLFSTDFLSPRYD---------GGTPYESNWFFCGSQGILSEYVYVNILDG 756
            H QL+++++F +  SSC G  CRKE+IG  E  G+G  E C+        +  L AP  + LFEL Y C+    D + VVL +  EC   A  C+DA T+P + ++TYQ+AFE   +  +V V VKL+FNY+   +          V C L E CHR+  +GE  F   L D +GDGWN+G +  +DHF L+++      + ++                    YLN++LGG  RTVPLCL+DG+YLFST F +P  D         G    ES W FCG +G L++Y +V +  G
Sbjct:   27 HSQLVMEQTFYMETSSCEGVSCRKEIIGANETLGVGAVEECSHNTAYWHED--LEAPNGKQLFELVYSCRKHGPDGEEVVLTSLEECGMVAEPCVDAGTNPGISEVTYQVAFEFEAQPYDVSVDVKLFFNYLKAGDKFHAKRSENAVRCLLSETCHRR-RSGEWSFPAELRDSMGDGWNAGGINLFDHFRLESRSELTAEVSAMMSSDEANTAAAPSPAARRTSYLNTMLGGSARTVPLCLSDGEYLFSTQFHTPGPDDSSHAFDVAGRLFSESTWTFCGHKGTLADYTHVRVAGG 319
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9283.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3N1_ECTSI1.040e-5537.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHK1_9PHAE2.070e-5137.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9283contigC-tenellus_contig9283:4247..5497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size756
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_000970.1
Cds size756
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790167.84525-CDS-C-tenellus_contig9283:4246..48681680790167.84525-CDS-C-tenellus_contig9283:4246..4868Choristocarpus tenellus KU2346CDSC-tenellus_contig9283 4247..4868 -
1680790167.8594234-CDS-C-tenellus_contig9283:5363..54971680790167.8594234-CDS-C-tenellus_contig9283:5363..5497Choristocarpus tenellus KU2346CDSC-tenellus_contig9283 5364..5497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9283.1.1prot_C-tenellus_contig9283.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9283 4247..5497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9283.1.1

>prot_C-tenellus_contig9283.1.1 ID=prot_C-tenellus_contig9283.1.1|Name=mRNA_C-tenellus_contig9283.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=252bp
HVQLILDKSFTVSPSSCAGGVCRKELIGGGEVFGLGKYECTKRIQSVEPN
RYLAAPTENLFELAYYCKDADGVVLETAGECKATVCLDASTDPNLQDITY
QLAFEGLTEEVEVVVKLYFNYMDVEESLSPIVTCPLQENCHRKCTAGEAL
FETVLTDEVGDGWNSGALGRYDHFSLDAKVAGGEIIESVYLNSLLGGKNR
TVPLCLADGQYLFSTDFLSPRYDGGTPYESNWFFCGSQGILSEYVYVNIL
DG
back to top

mRNA from alignment at C-tenellus_contig9283:4247..5497-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9283.1.1 ID=mRNA_C-tenellus_contig9283.1.1|Name=mRNA_C-tenellus_contig9283.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1251bp|location=Sequence derived from alignment at C-tenellus_contig9283:4247..5497- (Choristocarpus tenellus KU2346)
CACGTTCAGCTCATCCTAGACAAGAGTTTCACCGTATCTCCATCGTCATG
TGCGGGAGGTGTATGTCGTAAGGAGCTGATTGGAGGGGGAGAGGTATTCG
GATTGGGCAAATACGAGTGCACCAAACGAATCCAGTACGGAGCTGGCATC
GGAGGTGAGCCCCATTTTCCGACTGTGGGAAGGTTCTTGTTAGGCAGTTC
GAAGGTCGCACGATTACCTCGAAGTCGGATACGATCTACTCTCGCGACCG
CAAGAGACTTGGAATACCGTTGGATGTAACCCAGGGCTGTCCAGACTAGC
ATGGAGAGCAAAAAGACCTACAAGGCCACCATCGAAGCTTTTCTCGGCAG
GTCTCGGTAGATGAGCCGTAACAGCAACCCTTCGTCTCTCGTCGACATCT
ATACCGCAAAACCTCTGTTCTAACTTATCCAATTTTTCGCATCGTCTATA
CATCATATCCCTCAATAGGTGCAAGCTCTCACCTTCTCGAAATGCTTCTT
CGCCGCTTTCTTTATCATCTGGTATATTTAATACTAAACAGTATTGGTCA
ATGTAGTGGTCAGCTCTCAGGTTCACGAAAAACTTCAACGCCCTGTCCAT
TTCGACCCTGTCCATTCAACCCACCATAGATCCGTTGAACCTAACCGCTA
TCTTGCAGCTCCAACGGAGAATTTATTTGAGCTTGCGTACTATTGCAAGG
ATGCAGACGGGGTTGTCCTGGAGACGGCTGGCGAGTGCAAGGCGACCGTG
TGCCTTGATGCAAGCACAGACCCAAACCTCCAGGACATAACCTACCAGCT
CGCCTTTGAGGGCCTCACGGAGGAAGTAGAGGTAGTGGTGAAGCTGTACT
TCAATTACATGGACGTCGAGGAATCTCTTTCCCCAATAGTTACCTGTCCC
CTTCAGGAGAACTGTCACCGGAAATGTACTGCAGGGGAAGCCCTCTTTGA
GACAGTTCTTACGGATGAAGTGGGAGATGGCTGGAATTCTGGTGCTCTGG
GACGTTACGATCACTTTTCACTCGATGCCAAGGTGGCGGGGGGTGAAATA
ATTGAAAGCGTTTACCTGAACTCGCTCCTTGGAGGTAAGAACCGAACTGT
ACCTCTCTGTCTGGCAGATGGCCAGTACCTTTTCAGCACTGACTTCCTTT
CCCCTAGATATGACGGGGGAACCCCCTACGAATCTAACTGGTTCTTCTGT
GGGAGTCAAGGCATTCTAAGCGAATATGTTTATGTCAACATTTTAGATGG
G
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9283:4247..5497-

>mRNA_C-tenellus_contig9283.1.1 ID=mRNA_C-tenellus_contig9283.1.1|Name=mRNA_C-tenellus_contig9283.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=756bp|location=Sequence derived from alignment at C-tenellus_contig9283:4247..5497- (Choristocarpus tenellus KU2346)
CACGTTCAGCTCATCCTAGACAAGAGTTTCACCGTATCTCCATCGTCATG
TGCGGGAGGTGTATGTCGTAAGGAGCTGATTGGAGGGGGAGAGGTATTCG
GATTGGGCAAATACGAGTGCACCAAACGAATCCAATCCGTTGAACCTAAC
CGCTATCTTGCAGCTCCAACGGAGAATTTATTTGAGCTTGCGTACTATTG
CAAGGATGCAGACGGGGTTGTCCTGGAGACGGCTGGCGAGTGCAAGGCGA
CCGTGTGCCTTGATGCAAGCACAGACCCAAACCTCCAGGACATAACCTAC
CAGCTCGCCTTTGAGGGCCTCACGGAGGAAGTAGAGGTAGTGGTGAAGCT
GTACTTCAATTACATGGACGTCGAGGAATCTCTTTCCCCAATAGTTACCT
GTCCCCTTCAGGAGAACTGTCACCGGAAATGTACTGCAGGGGAAGCCCTC
TTTGAGACAGTTCTTACGGATGAAGTGGGAGATGGCTGGAATTCTGGTGC
TCTGGGACGTTACGATCACTTTTCACTCGATGCCAAGGTGGCGGGGGGTG
AAATAATTGAAAGCGTTTACCTGAACTCGCTCCTTGGAGGTAAGAACCGA
ACTGTACCTCTCTGTCTGGCAGATGGCCAGTACCTTTTCAGCACTGACTT
CCTTTCCCCTAGATATGACGGGGGAACCCCCTACGAATCTAACTGGTTCT
TCTGTGGGAGTCAAGGCATTCTAAGCGAATATGTTTATGTCAACATTTTA
GATGGG
back to top