mRNA_C-tenellus_contig9210.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9210.1.2
Unique NamemRNA_C-tenellus_contig9210.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9210.1.2 vs. uniprot
Match: A0A6H5KG81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG81_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 2.970e-56
Identity = 107/196 (54.59%), Postives = 128/196 (65.31%), Query Frame = 2 
Query:  206 MSITKEVLDQHLAELNSNSCRDKATLLLREGKAAEAAKWFSKAISRSPADSSLFSARSMAWETAGRGTLAVSDAAVGVCMRPRVAAGFIRLSSALESQGRYKEAVRACFLGMRCGDSRCNGILGSSMARVRELGSLPPVEWTPVSQRERWVWRLLSVRGLILRFLER-AGRWT--GLSIAARIAAGGDNFMHPPWP 784
            M  +KEV++  LA  + N CRDKA  LL+EGKA  + +WFSKAI   PAD+SL+  RS +WE AG    AV DA VGVC+RPRVAAGF RLS+  E+QGR+ + VRACFLGMRCGDS  NG LG  M+  RE G LPP++WTP  +RERW W  LS RG +LR     AGR    G  +A     GG     PPWP
Sbjct:    1 MVFSKEVVELQLATKDPNLCRDKAVKLLKEGKAELSVEWFSKAIRLRPADASLYWGRSQSWERAGNPRKAVVDAGVGVCLRPRVAAGFARLSATFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAGLALGACEGGQGLSSPPWP 196
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BLAST of mRNA_C-tenellus_contig9210.1.2 vs. uniprot
Match: D7G7K5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K5_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 6.740e-39
Identity = 76/133 (57.14%), Postives = 88/133 (66.17%), Query Frame = 2 
Query:  395 AGRGTLAVSDAAVGVCMRPRVAAGFIRLSSALESQGRYKEAVRACFLGMRCGDSRCNGILGSSMARVRELGSLPPVEWTPVSQRERWVWRLLSVRGLILRFLER-AGRWT--GLSIAARIAAGGDNFMHPPWP 784
            AG    AV DA VGVC+RPRVAAGF RLS++ E+QGR+ + VRACFLGMRCGDS  NG LG  M+  RE G LPP++WTP  +RERW W  LS RG +LR     AGR    G  +A    AGG  F  PPWP
Sbjct:    2 AGNPRKAVVDAGVGVCLRPRVAAGFARLSASFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAGLALAACAGGQGFSSPPWP 134
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9210.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG81_9PHAE2.970e-5654.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K5_ECTSI6.740e-3957.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9210contigC-tenellus_contig9210:374..4963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog77586.LPERR03G24400.1
PFAMsAnk_2,Ank_3,Ank_4,TPR_2,TPR_8
Model size2946
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000378
EggNOG OGsCOG0457@1|root,COG0666@1|root,KOG0504@2759|Eukaryota,KOG0548@2759|Eukaryota,37HF2@33090|Viridiplantae,3G8J9@35493|Streptophyta,3M296@4447|Liliopsida,3IDRJ@38820|Poales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_002070.1
DescriptionAnkyrin repeats (3 copies)
Cds size588
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9210.1.2prot_C-tenellus_contig9210.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9210 579..2810 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790154.8542125-UTR-C-tenellus_contig9210:373..5781680790154.8542125-UTR-C-tenellus_contig9210:373..578Choristocarpus tenellus KU2346UTRC-tenellus_contig9210 374..578 +
1680790156.7289004-UTR-C-tenellus_contig9210:2810..49631680790156.7289004-UTR-C-tenellus_contig9210:2810..4963Choristocarpus tenellus KU2346UTRC-tenellus_contig9210 2811..4963 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790156.5143943-CDS-C-tenellus_contig9210:578..6941680790156.5143943-CDS-C-tenellus_contig9210:578..694Choristocarpus tenellus KU2346CDSC-tenellus_contig9210 579..694 +
1680790156.685418-CDS-C-tenellus_contig9210:962..11761680790156.685418-CDS-C-tenellus_contig9210:962..1176Choristocarpus tenellus KU2346CDSC-tenellus_contig9210 963..1176 +
1680790156.7023225-CDS-C-tenellus_contig9210:2234..23501680790156.7023225-CDS-C-tenellus_contig9210:2234..2350Choristocarpus tenellus KU2346CDSC-tenellus_contig9210 2235..2350 +
1680790156.7172687-CDS-C-tenellus_contig9210:2668..28101680790156.7172687-CDS-C-tenellus_contig9210:2668..2810Choristocarpus tenellus KU2346CDSC-tenellus_contig9210 2669..2810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9210.1.2

>prot_C-tenellus_contig9210.1.2 ID=prot_C-tenellus_contig9210.1.2|Name=mRNA_C-tenellus_contig9210.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=196bp
MSITKEVLDQHLAELNSNSCRDKATLLLREGKAAEAAKWFSKAISRSPAD
SSLFSARSMAWETAGRGTLAVSDAAVGVCMRPRVAAGFIRLSSALESQGR
YKEAVRACFLGMRCGDSRCNGILGSSMARVRELGSLPPVEWTPVSQRERW
VWRLLSVRGLILRFLERAGRWTGLSIAARIAAGGDNFMHPPWPGA*
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mRNA from alignment at C-tenellus_contig9210:374..4963+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9210.1.2 ID=mRNA_C-tenellus_contig9210.1.2|Name=mRNA_C-tenellus_contig9210.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4590bp|location=Sequence derived from alignment at C-tenellus_contig9210:374..4963+ (Choristocarpus tenellus KU2346)
AGCTACCCTAACCCTAATTACTGCAAGAACGACATTGTACCACATCAATT
CTGTGCCGCTTTTTTCGGGCATGTGTGCACAAAATCGGGGTAGGTACTGT
GTAGAGATCACGTCTTTCGATGCACGTTGAACAACAGACCTGACTCTGTC
TTAGTGGTTCGACCAAATATAGTGCAGATATTGTTTGTGCATATTCCAGT
TGCACATGAGCATCACCAAGGAAGTCCTGGATCAGCATTTGGCGGAACTG
AACTCCAATTCCTGTCGGGATAAGGCAACCCTGCTTCTCCGAGAGGGAAA
GGCCGCTGAGGCCGCGAAATGGTGCTTACGCCATCGCCCTTTTAGCATGA
GTAGATCAGACATGAAAATTGCTTTCATGGAGTTCGACCTGTCATTGTAT
TTGTGGTTGTTCTTTTTGTTGACCCTACAGACTTCTTCCCGATCCATCCT
AGCATCGTTCTCAGGAACAAGTGTTTGATTGGGACAAAATCCTTCGTAAC
TCCTCCCTCCCTTTAGGCCAATTTAGTGAGAAGAAATCTATATTTCCCCC
AATACCATTATGTTGAACCCTCTTCAAAAAAAATGAAAGGTTTAGCAAGG
CAATTTCCAGATCCCCAGCAGACTCATCCTTGTTTTCAGCCCGCTCCATG
GCCTGGGAGACTGCAGGTCGGGGTACTCTGGCTGTCTCGGATGCTGCAGT
CGGTGTGTGCATGCGCCCGAGGGTTGCTGCAGGGTTCATCCGTTTGTCTT
CCGCTCTTGAGTCGCAAGGGCGCTACAAGGAAGCTGTCCGTGCCTGTTTC
CTGGTGAGGCATACATGCCCATATTGACGAGATGGTGTTTGGGGGCAGCG
GTAGTTTTTCTCTTTTTGAAAGACGTTTATCTCAGTTGAACTTCTGGAAG
GCGTCAAGTGCATTCTTGACCTTTACAATTAGACTTGTCCTGATAGAAAA
TTTACTCGCGGTGGTAGAACCTAGAGACGGGCACGAGAGGCAACCAAAAC
GATAGTCAAACTGCTCTAGAATGACCACCCAGCATTATTAGTCGACGGTG
GAGCTTCTTTGTGTGCTGCGCAAGATGCAACATGTACATATGTCAGCGTC
GGCGGGATGGGCGACAGAGTCGCCGATCCACTCCCTGGTTGCTGGTCGCT
GACTACATAGCAACTCCAACCATGACTCGTCATTCCTGACTCCCAACGAT
TTCTGACAAGGAAGCAGAGAAAAGAATTGGGGCAAGTATTCGTATGTAGA
CAATATTGCCACCGAAGCCTCCAATTTCAGTGTGCAGAAATTCTGCCTCA
AAATCGGCTTCATTTCGTTCCTTGGTGCTGAGGGTGTGCTGTGCTTGGTA
CTACTTGGGCACACCCACAAACCAGGCAGGACCTTTGTTCATATGCTTAG
GGGCGAACATTTCACTGGGTGACAAGCAAATATCTCCATGTCAGAGGTAA
ACTCGGTAGGGGCTACTCAAACCCTCAAGGCATTTTGTGTCACATGAGAG
GTATCCTTTCCAGCGTGCTGGGCCTGCAAGCTGGTGTAGTGTATGCTCAA
GTGATCAAATGCTAATCCGCCCCCTGTACACACTCCCTATGTGTGGAATA
AATCTGAAGTTTTGCATGTGCCATCTCCTCTGAAGCCTGGGCACATTGGT
GCAAACCGCATGTGCAAAGTGTGCAATATGTGATGGTTTTATTTTCTTGA
TGGCTCAGTTGTATTGTGAATCTCCTTTGCTCCTCCAACTGCAAATTGTC
AAACCAGGGCTGCAATTTCTTGTTCCTCCCCCTCTCCCCTCCCCCCCGCC
AACACATTCCATGGCACCGTCTCGCTGTCTTCTGTTGTCCCTCATGTGCT
TTATGCAACAGGGTATGCGTTGTGGGGACTCCAGGTGCAATGGGATTCTT
GGAAGTTCCATGGCAAGGGTACGTGAGCTAGGCAGCCTCCCGCCCGTGGA
ATGGACACCGGTTAGCCAGCGTGAGAGGTAAAGATTATCAGTGTGCTTCT
TATGATCTTTCATACCTTGGCTTCCCATCCATCTCCTCATGCTGTCTTTA
CAGTATTGAACTCTGTGGGCGTACACCATGGAGTCTCTGCTCTTATTTGT
GTGAAGCACCACTTTGTGTTAGGGACAGTATCTATGTTGGAAGTTGTGCA
CCAGCCCGAGATAGGGTTTTGACACTGTTTAACATGTGATGCCTTGGACA
CTTGATGGTCCAGTACCCTTGAGCTCTGGTGTGGTGCTTTTTCTCACTAT
TTATTAATTTGATCCCTCTTGTTTTGTACCTCTCCTAATCAATAGGTGGG
TGTGGAGATTGCTTTCTGTAAGAGGGCTGATTCTAAGGTTTTTGGAAAGA
GCTGGGAGATGGACAGGCCTGAGCATTGCTGCAAGGATTGCTGCTGGGGG
TGATAACTTCATGCATCCGCCGTGGCCAGGGGCTTAAGCGACCCTCCTTT
AGGTCGTATGCAATTTTGATATGTGAAGAATAACAGTATTATAGTTGTTG
TTTGTGAAGTAGTCCTATGTATTACTTTCCTTTGGAGTACGCAAGTGAAA
CCTTTCAGCTATCCTGACTGTGACCTATTTGAGCAAGTAGAATCCGTCTT
TTTAAATTTATCTCAAGAGGTTTATTTTTATGTGGAGTGTAAGCGAAGGG
GGGGTCAAGCATCCTAGCACTCAACCGTGGGTGTATTTTGCAGGGGCCTG
CACATTTTTGTAGGACTCCATGCAGCAGCGAAACTACTGCCTAGAACGGA
AGACAAGACTGTGGAACAGGTGATCACTAATGTTGAGAAGTGGTGCAATC
AACTATCGTGTGTGTAGGTGAGTTGATATTCTGTACCTGATGGTATGGCA
CATTTTGAGGGGAGTTACTACAGTGCGTTTTATTATGGTATCCAGGTGGG
AAGGCACCCTCATAATTTGGGATGAGGTGTCTCTGTTGTGATCACTCGTT
CTTTTCTATGACACCTAGGAGTCCAACCGCGGTCCGTGAAGGGATGAGAC
CACTTCAATCATACCGTTCCTTATTGCATGATTTTTATTCTGTGATGACT
CTATCCCATCAACTGGCTGCCCCCTCCCCACTTATTGCCACTGTATGATT
TTAAGAGGGTGGGTTGGTCAAAGATATAAGTTAAGAGGATTGCCTCAATT
CATTGGATAAAATTACCTCCAGGTTATACTGCTTTTCACAGCGTCCTGTA
TCATACCTACCCTAGTGGATTTCTTTCTAGGATTGAATGTTCAAGGACTC
TTTCGATACCTTCTTCCAATACCTACCCTAGTGGATTTCCTACTTGTCAA
GCGTTCGGGCACTTCCTTGCATCCTTGGGTAGCGCCATACCTTGAGCAAT
AGTCTGCAGTCTGCAAATCTTGTGCAAGCAGCTTGAATCAAGGAACCAGG
CTCTCACTTCTTCGAAATATGATTGGTTTTGATTACTATTATTCTACTGT
GAAAGGACACCATTGTGACTGTCCCACCCATATGAGAACTAATGATGTGA
CTGTCATTGTTGTCTCATGCTCAAGAGAGTACCGCCTAATTAGAGGAAAA
ACCAGGTACAGTGGAGAAGTGTACAAGAAAAATCATGTCTGAAGTGATGC
TAAGAAAAGTACATGAACAGGCAGGTAATAATTTTCCTGGTAGTAGAACA
GGATAAGTTTAGATAAAGGATAAAAGAGCCCCTACGTTGCATTTTATAAA
GCGACGACAACTTGTGTCATGATGCAAAACCAGACGCATGTGATGATGGT
TGAGAAGGAGAACTGAATCGCATGCATCACAACAGTTTAGAGCAGGCAGT
ACATGATACAGTAGAGTAGAGTGTTCGGTTACCATTGCATGGTAGATCAT
GGATTCTGATGGTGTGGCGATCTGGATGTTTAAACTAGGTAACGGCTTAG
GTGAAGGTTATTTCCACGATGTGATTTTGGATACCATCGATGCAGAGCCT
TCCCACACATTAATTAGGCTAACTTAATGTGTATTTTGTATTTTTTCCAT
GTGAAAGGTGAACTGTACCTATGGTCTTCCTAGAAATCCTTGAATCGATT
GAACAATTTAGTGGGTGAGCGCTATAAATAGCTGTAGTTTTGTGAGGACA
TTCGGCAGTTGGACACTAGTCTCACCAAAGGAATGCGCAGCTCTTAACAC
CTGGTTCACATGGATGGCGAGTCATAGGAAGCACACCTCGAACTAGGGTC
TCCACTTATACCTGTTTAGGAGTGTGATACTTGTTGCAAGAAGAGACCAT
TTCTTTATTGGATGGTTCAGGAAGGGAAGCTATTCTTTGTGTATGTTTAT
AGGCATGATGTACTTCCCAGGCAATGGTTCCAATCATTCATCTCTAATTT
TTGCAGGGTCTCATATTTTTTGGTCCTGGGCTTCAGTCTGATAGGTTTTT
ATTTTTTGCTTACACGATTGGTGGTCACATACATGTTCGTTCCTCTCATA
GCACTTCAGAGTGAACTATACAGCCCCCATAACAGTTTATTCTACTGCAA
TACTATGTACTTTGTACAGAACAAGGACTTGTATATATGTGTGCATGGTT
TGTATGCCCAAAATATAGCACACACTACTTGAAGTGTGCA
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Coding sequence (CDS) from alignment at C-tenellus_contig9210:374..4963+

>mRNA_C-tenellus_contig9210.1.2 ID=mRNA_C-tenellus_contig9210.1.2|Name=mRNA_C-tenellus_contig9210.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=588bp|location=Sequence derived from alignment at C-tenellus_contig9210:374..4963+ (Choristocarpus tenellus KU2346)
ATGAGCATCACCAAGGAAGTCCTGGATCAGCATTTGGCGGAACTGAACTC
CAATTCCTGTCGGGATAAGGCAACCCTGCTTCTCCGAGAGGGAAAGGCCG
CTGAGGCCGCGAAATGGTTTAGCAAGGCAATTTCCAGATCCCCAGCAGAC
TCATCCTTGTTTTCAGCCCGCTCCATGGCCTGGGAGACTGCAGGTCGGGG
TACTCTGGCTGTCTCGGATGCTGCAGTCGGTGTGTGCATGCGCCCGAGGG
TTGCTGCAGGGTTCATCCGTTTGTCTTCCGCTCTTGAGTCGCAAGGGCGC
TACAAGGAAGCTGTCCGTGCCTGTTTCCTGGGTATGCGTTGTGGGGACTC
CAGGTGCAATGGGATTCTTGGAAGTTCCATGGCAAGGGTACGTGAGCTAG
GCAGCCTCCCGCCCGTGGAATGGACACCGGTTAGCCAGCGTGAGAGGTGG
GTGTGGAGATTGCTTTCTGTAAGAGGGCTGATTCTAAGGTTTTTGGAAAG
AGCTGGGAGATGGACAGGCCTGAGCATTGCTGCAAGGATTGCTGCTGGGG
GTGATAACTTCATGCATCCGCCGTGGCCAGGGGCTTAA
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