mRNA_C-tenellus_contig9192.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9192.1.2
Unique NamemRNA_C-tenellus_contig9192.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Match: D8LF20_ECTSI (Non-specific serine/threonine protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF20_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 2.240e-68
Identity = 119/171 (69.59%), Postives = 144/171 (84.21%), Query Frame = 3
Query:  678 QEVRCMVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERME-ADPDVALKLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRR-LVAIDFGLASSQPLPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKLAEVRKRGRKRDMFG 1184
            QE RCM+KA+KAGV TPCL+ +DSANTKI ME+VDGIT KQFL + ++  D   ALK+AG+IG+ +AKMHDAQVVHGDLTTSNFMVRSGP    +VAIDFGLASS+PLPEDKAVDLYVLERAF+STH  ++PL+ E +R Y+AAS  +K  AT+ KL+EVR+RGRKR+MFG
Sbjct:   48 QEARCMLKARKAGVRTPCLYQLDSANTKITMEKVDGITAKQFLLDCLQKGDSAAALKVAGEIGKMVAKMHDAQVVHGDLTTSNFMVRSGPGEGDVVAIDFGLASSKPLPEDKAVDLYVLERAFISTHENADPLVNEVMRAYKAAS--RKADATLHKLSEVRRRGRKREMFG 216          
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Match: A0A2D4BFR4_PYTIN (Non-specific serine/threonine protein kinase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFR4_PYTIN)

HSP 1 Score: 182 bits (462), Expect = 6.290e-50
Identity = 96/172 (55.81%), Postives = 124/172 (72.09%), Query Frame = 3
Query:  678 QEVRCMVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERMEADP---DVALKLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRRLVAIDFGLASSQPLPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKLAEVRKRGRKRDMFG 1184
            QE RC++K +KAGV TPC++++D  + ++  E++ G +VK++L    + DP   D ALKLA  IG AIAKMHDA +VHGDLTTSN M+ S     +  IDFGLA+SQPLPEDKAVDLYV+ERAF STH  SE L++E +R Y+A S  ++  AT +KLA VR RGRKR M G
Sbjct:   54 QEARCIMKCRKAGVITPCIYLIDEDHGRLXTEKIQGGSVKEYLXTAYKKDPNYGDNALKLAYQIGAAIAKMHDADIVHGDLTTSNMMLSSPDAVNVTIIDFGLANSQPLPEDKAVDLYVMERAFNSTHINSEILVDEVLRAYKACS--RRSDATFQKLAAVRLRGRKRTMVG 223          
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Match: A0A8K1CI69_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CI69_PYTOL)

HSP 1 Score: 181 bits (460), Expect = 1.180e-49
Identity = 95/172 (55.23%), Postives = 122/172 (70.93%), Query Frame = 3
Query:  678 QEVRCMVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERMEADPDV---ALKLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRRLVAIDFGLASSQPLPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKLAEVRKRGRKRDMFG 1184
            QE RC++K +KAGV TPC++++D  N +I  E++ G +VK++LR   + DP     A +LA  IG AIAKMHDA +VHGDLTTSN M+ S     +  IDFGLA+SQPLPEDKAVDLYV+ERAF STH  SE L+ E +R Y+A S  ++  +T +KLA VR RGRKR M G
Sbjct:   53 QEARCIMKCRKAGVLTPCIYLIDEDNGRIYTEKIQGGSVKEYLRAAYKKDPKYGPEATRLAYSIGAAIAKMHDADIVHGDLTTSNMMLSSAEATEVTVIDFGLANSQPLPEDKAVDLYVMERAFDSTHINSELLVAEVLRAYKACS--RRADSTFQKLAAVRLRGRKRTMVG 222          
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Match: A0A6G0XQZ6_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQZ6_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.200e-48
Identity = 93/174 (53.45%), Postives = 123/174 (70.69%), Query Frame = 3
Query:  678 QEVRCMVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERMEA-----DPDVALKLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRRLVAIDFGLASSQPLPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKLAEVRKRGRKRDMFG 1184
            QE RC +K +KAGV+TPC+F++D  + ++ MER+ G +VKQFL +   A     DP  AL++   +G AIA+MHDA +VHGDLTTSN M +      +  IDFGLA+SQPLPEDKAVDLYV+ERAF STH  S+PL+ E +R Y+A S  ++  AT  +L +VR RGRKR+M G
Sbjct:   52 QEARCNMKCRKAGVDTPCIFVIDEKHGRLCMERILGKSVKQFLYDSYNAETKQYDP-AALEVCYQVGVAIARMHDADIVHGDLTTSNLMKKDASTSSITVIDFGLANSQPLPEDKAVDLYVMERAFQSTHVNSDPLVAEILRAYKAKS--RRSDATFHRLYQVRSRGRKRNMVG 222          
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Match: H3GJN2_PHYRM (Non-specific serine/threonine protein kinase n=17 Tax=Phytophthora TaxID=4783 RepID=H3GJN2_PHYRM)

HSP 1 Score: 178 bits (452), Expect = 1.670e-48
Identity = 94/172 (54.65%), Postives = 122/172 (70.93%), Query Frame = 3
Query:  678 QEVRCMVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERMEADPD---VALKLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRRLVAIDFGLASSQPLPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKLAEVRKRGRKRDMFG 1184
            QE RC++K ++AGV TP +F+VD   +++ +E+V G ++K +LR   + DP    +ALK A  IG AIAKMHDA +VHGDLTTSN M+ S     +  IDFGLA+SQPLPEDKAVDLYV+ERAF STH  SE L+EE +R Y A S  ++  A  +KL++VR RGRKR M G
Sbjct:   53 QEARCILKCRRAGVLTPAIFLVDEDKSRLYLEKVPGGSLKDYLRRAYKLDPKYGPMALKKAYQIGEAIAKMHDADIVHGDLTTSNMMLSSDDATDVTMIDFGLANSQPLPEDKAVDLYVMERAFASTHVNSELLVEEVLRAYRAKS--RRSDAIFQKLSQVRLRGRKRTMVG 222          
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Match: W4FZ43_9STRA (Non-specific serine/threonine protein kinase n=3 Tax=Aphanomyces TaxID=100860 RepID=W4FZ43_9STRA)

HSP 1 Score: 177 bits (450), Expect = 3.650e-48
Identity = 94/173 (54.34%), Postives = 119/173 (68.79%), Query Frame = 3
Query:  678 QEVRCMVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERMEADPDV----ALKLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRRLVAIDFGLASSQPLPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKLAEVRKRGRKRDMFG 1184
            QE RC  K +KAGV+TPC+F++D A  ++ MER+ G++ KQ+L +   A        AL +   IG AIA+MHDA +VHGDLTTSN M +   L  +  IDFGLA+SQPLPEDKAVDLYV+ERAF STH  SEPL+ E +R Y+A S  ++  AT  KL +VR RGRKR M G
Sbjct:   57 QEARCNFKCRKAGVDTPCIFLIDEAKGRLYMERIQGMSAKQYLYDSYNATTQQYATDALAVCYQIGVAIARMHDADIVHGDLTTSNLMKKDS-LSTITVIDFGLANSQPLPEDKAVDLYVMERAFQSTHVHSEPLVAEILRAYKAKS--RRSDATFHKLYQVRSRGRKRTMVG 226          
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Match: A0A0P1B2T3_PLAHL (Non-specific serine/threonine protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B2T3_PLAHL)

HSP 1 Score: 176 bits (447), Expect = 8.690e-48
Identity = 94/172 (54.65%), Postives = 121/172 (70.35%), Query Frame = 3
Query:  678 QEVRCMVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERMEADPDV---ALKLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRRLVAIDFGLASSQPLPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKLAEVRKRGRKRDMFG 1184
            QEVRC++K ++AG+ TP ++MVD   +++ ME+V G ++K +LR   + DP     A + A  IG AIAKMHDA +VHGDLTTSN M+ S     +  IDFGLASSQPLPEDKAVDLYV+ERAF STH  SE L+EE +R Y A S  ++  A  +KL++VR RGRKR M G
Sbjct:   53 QEVRCILKCRRAGILTPVIYMVDEDKSRLYMEKVLGGSLKDYLRRAYKLDPTYGAQATQKAYHIGEAIAKMHDADIVHGDLTTSNMMLSSDDATNVTLIDFGLASSQPLPEDKAVDLYVMERAFASTHVNSELLVEEVLRAYRAKS--RRSDAIFQKLSQVRLRGRKRTMVG 222          
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Match: A0A024TKU5_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TKU5_9STRA)

HSP 1 Score: 176 bits (447), Expect = 9.810e-48
Identity = 92/173 (53.18%), Postives = 120/173 (69.36%), Query Frame = 3
Query:  678 QEVRCMVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERMEADPD----VALKLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRRLVAIDFGLASSQPLPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKLAEVRKRGRKRDMFG 1184
            QE RC  K +K+GV+TPC+F++D A  ++ MER+ G+++KQFL +  +        VAL++   IG AIA+MHDA +VHGDLTTSN M +      +  IDFGLA+SQPLPEDKAVDLYV+ERAF STH  SEPL+ E +R Y+A S  ++  A   KL +VR RGRKR M G
Sbjct:   57 QEARCNFKCRKSGVDTPCIFLIDEAKGRLYMERIHGLSIKQFLFDTYDESSGTYSAVALEVCYQIGVAIARMHDADIVHGDLTTSNLM-KKADTTSITVIDFGLANSQPLPEDKAVDLYVMERAFQSTHVHSEPLVAEILRAYKAKS--RRSDAIFHKLYQVRSRGRKRTMVG 226          
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Match: G4ZHC3_PHYSP (Non-specific serine/threonine protein kinase n=2 Tax=Peronosporaceae TaxID=4777 RepID=G4ZHC3_PHYSP)

HSP 1 Score: 176 bits (445), Expect = 1.730e-47
Identity = 95/173 (54.91%), Postives = 123/173 (71.10%), Query Frame = 3
Query:  678 QEVRCMVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERME-ADPD---VALKLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRRLVAIDFGLASSQPLPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKLAEVRKRGRKRDMFG 1184
            QE RC++K ++AGV TP +F+VD   +++ +E+V G ++K +LR   + ADP    +ALK A  IG AIAKMHDA +VHGDLTTSN M+ S     +  IDFGLA+SQPLPEDKAVDLYV+ERAF STH  SE L+EE +R Y A S  ++  A  +KL++VR RGRKR M G
Sbjct:   53 QEARCILKCRRAGVLTPAIFLVDEDKSRLYLEKVQGGSLKDYLRRAYKLADPKYGPMALKKAYQIGAAIAKMHDADIVHGDLTTSNMMLSSDDATDVTMIDFGLANSQPLPEDKAVDLYVMERAFASTHVNSELLVEEVLRAYRAKS--RRSDAIFQKLSQVRLRGRKRTMVG 223          
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Match: A0A3R7W2Z6_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7W2Z6_9STRA)

HSP 1 Score: 175 bits (443), Expect = 3.250e-47
Identity = 93/172 (54.07%), Postives = 121/172 (70.35%), Query Frame = 3
Query:  678 QEVRCMVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERMEADPD---VALKLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRRLVAIDFGLASSQPLPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKLAEVRKRGRKRDMFG 1184
            QEVRC++K ++AGV TP +F+VD   +++ +E+V G ++K +LR   + D     +ALK A  IG AIAKMHDA +VHGDLTTSN M  S     +  IDFGLA+SQPLPEDKAVDLYV+ERAF STH  SE L+EE +R Y A S  ++  +  +KL++VR RGRKR M G
Sbjct:   53 QEVRCILKCRRAGVFTPIIFLVDENMSRLYLEKVQGGSLKDYLRRAHKIDAKYGPLALKKAYQIGEAIAKMHDADIVHGDLTTSNMMQSSDDATNVTMIDFGLANSQPLPEDKAVDLYVMERAFASTHVNSELLVEEVLRAYRATS--RRSDSIFQKLSQVRMRGRKRTMVG 222          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9192.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF20_ECTSI2.240e-6869.59Non-specific serine/threonine protein kinase n=2 T... [more]
A0A2D4BFR4_PYTIN6.290e-5055.81Non-specific serine/threonine protein kinase n=1 T... [more]
A0A8K1CI69_PYTOL1.180e-4955.23Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XQZ6_9STRA1.200e-4853.45Non-specific serine/threonine protein kinase n=1 T... [more]
H3GJN2_PHYRM1.670e-4854.65Non-specific serine/threonine protein kinase n=17 ... [more]
W4FZ43_9STRA3.650e-4854.34Non-specific serine/threonine protein kinase n=3 T... [more]
A0A0P1B2T3_PLAHL8.690e-4854.65Non-specific serine/threonine protein kinase n=1 T... [more]
A0A024TKU5_9STRA9.810e-4853.18Non-specific serine/threonine protein kinase n=1 T... [more]
G4ZHC3_PHYSP1.730e-4754.91Non-specific serine/threonine protein kinase n=2 T... [more]
A0A3R7W2Z6_9STRA3.250e-4754.07Non-specific serine/threonine protein kinase n=1 T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9192contigC-tenellus_contig9192:163..4536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4787.PITG_01271T0
PFAMsPkinase
Model size1889
Max annot lvl4776|Peronosporales
KEGG koko:K08851
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.75e-52
EggNOG OGsCOG3642@1|root,KOG3087@2759|Eukaryota,3QAIG@4776|Peronosporales
EC2.7.11.1
DescriptionLipopolysaccharide kinase (Kdo/WaaP) family
Cds size495
COG categoryT
BRITEko00000,ko01000,ko01001,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790153.5075932-UTR-C-tenellus_contig9192:162..8541680790153.5075932-UTR-C-tenellus_contig9192:162..854Choristocarpus tenellus KU2346UTRC-tenellus_contig9192 163..854 +
1680790153.5554721-UTR-C-tenellus_contig9192:3834..45361680790153.5554721-UTR-C-tenellus_contig9192:3834..4536Choristocarpus tenellus KU2346UTRC-tenellus_contig9192 3835..4536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790153.5200088-CDS-C-tenellus_contig9192:854..9841680790153.5200088-CDS-C-tenellus_contig9192:854..984Choristocarpus tenellus KU2346CDSC-tenellus_contig9192 855..984 +
1680790153.5298398-CDS-C-tenellus_contig9192:1427..16121680790153.5298398-CDS-C-tenellus_contig9192:1427..1612Choristocarpus tenellus KU2346CDSC-tenellus_contig9192 1428..1612 +
1680790153.5452669-CDS-C-tenellus_contig9192:3654..38341680790153.5452669-CDS-C-tenellus_contig9192:3654..3834Choristocarpus tenellus KU2346CDSC-tenellus_contig9192 3655..3834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9192.1.2prot_C-tenellus_contig9192.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9192 855..3834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9192.1.2

>prot_C-tenellus_contig9192.1.2 ID=prot_C-tenellus_contig9192.1.2|Name=mRNA_C-tenellus_contig9192.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=165bp
MVKAKKAGVETPCLFMVDSANTKIIMERVDGITVKQFLRERMEADPDVAL
KLAGDIGRAIAKMHDAQVVHGDLTTSNFMVRSGPLRRLVAIDFGLASSQP
LPEDKAVDLYVLERAFLSTHACSEPLIEEAIRCYEAASDAKKGAATMRKL
AEVRKRGRKRDMFG*
back to top

mRNA from alignment at C-tenellus_contig9192:163..4536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9192.1.2 ID=mRNA_C-tenellus_contig9192.1.2|Name=mRNA_C-tenellus_contig9192.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4374bp|location=Sequence derived from alignment at C-tenellus_contig9192:163..4536+ (Choristocarpus tenellus KU2346)
GTTTACTTCACAAGATCGACATGGAGAGTTCCACTCCAATGGAGATGCTA AGTCAGGGGGCGGAAGCGGTGAGCGAAGATAAAGTGATTAGACTAGGACA TCAAGGTAGCCAGTTTGTATTCGCGTTGTGCTAGGTACCCCTCCCAAGAT ATCGAAGTAATGCAAAGTCTCTTTTGTTTAGGGATTGTTTTGGTTAAGCC CTTAGTATAGAGGCCAACTTGTGGGAAGGGAGAGTCTAGACGAGATTTTG ACTATTCCTCTACGACTGAAAATATACTATAATCGATCACCTGCAACTAT TGATGACCAGCGCGTCTATGCCACGAGTTTTTGTGGTCGACCTGCGGTCA TCAAGGAACGCTTCCCCAAGAGTTATCGTCATCCTTTGCTGGATGAGAAG CTCACCACAAGGCGGACACTGCAGGCAAGACCTGCATTACTTTCGTTGCC TTATAACCCAGCCAGAATCAGTCTGCCAAGGTACAGAGATTAGCTTCTAG CAAGCAACAAAAACAATTTTTTACATCCAACCTAATACTAGCGTGACCCT TTGATTATCACTATGAAGGCCGAAAGGCACCATTTCTTGTGAGCGTAATG GGAGCTGCGAGAAGAGCGCTTTTCATAATTTACTTGTAGTTGGCTGATTT TCCTTATAATATTTCACCACCGTTCCGCAGGAGGTGCGGTGTATGGTGAA GGCTAAGAAGGCCGGGGTAGAGACCCCGTGCCTATTTATGGTAGACAGTG CTAATACGAAGATCATTATGGAAAGGGTGGATGGGATAACTGTCAAGCAG TTCCTGAGGGAGCGCATGGAAGGTGAGATAGCTCGGTGGAAATATAAGAA TGATGATGAAGGGTGGGAGCATTAGCAACCTTGCGTCATGCGAACACAAG GAACTTTCATTAGCTAGGATTGCATGCATACAGGTAGTGTGGGAATCTTG CCGCAAATCTGTACAACACGGTTGAGGGATAGATGTTAAGGAACTTGCAT CTTTTATATTCCAGGCACACATGTTCGAGCTGCACGAAACTGTATTCAGT TCAACAATGTTTTGCGCAAACCACTACACACTCAACTATATTCATAGTGC CACTTGCTTTTATCTCTCACCCTTTTCTTTTCAATGGCAGTGGCCCACTG TTTAATCTGTTTTCTGAGGCAGAGGGGTGAGGACTTAGGCACTTCTCCTT TCCCCTATGCCGCCAACACTGCTATTCTGGTCACCGTCCTCTGATCTGCC CTCCGTCAACGGCAGCTGATCCTGATGTGGCACTGAAGTTAGCAGGAGAC ATCGGGAGGGCTATTGCCAAAATGCATGATGCTCAGGTGGTTCACGGAGA TCTCACCACGTCTAACTTCATGGTTCGCAGTGGACCATTGCGGCGTTTAG TTGCCATCGACTTTGGATTGGCCTCGAGTCAACCTCTACCTGAGGACAAG GTGGGGGCAGAAAATGATATTGTGGTAGGTTGTTGGCAAGGCATTGGAGA GGGCGATGTTAATTGGCAAGGAGGAGGTTAACTTCTCGGAAAAGAGTTAT TTGAACATGGATAGTTGTTATGCCTCTTCTTTTTAGCTTAAGACCTACTT GTAATTTAGGAGTCTGAAGTGTTTAGGCTTTGTTTTGCTTTTTCCTGAGT TGCTGTTGAGAAGTGCTGATAATGAGGAAAAAGCGCTGATAATGAGGAAA AAGGAGAAGCATTCACGAGCAGGGGTGTGGATTGTGCGAAGTATGGTGGA CTCTAGGCTAGATGACTGGGTCACAAACACAAGAGACATTTGATTTTTTA GTCAGAACATTTCGTTTTTGTGTAGAGCAACTTCGTGGTGTGTTTTCTTG AGCAGTTTGATGGCAGGGATGCAACAGGATGCCCTGGCTGATGAGGGTTT GAGCTTACTATGTTTCGCCATGGACAGATACACCATGGACAGATGTTTAT ACCTTCTTCAAAGTTTCTTCAAAGTTTCTTCAAAGTACATTCTGATGCCA CAAGAGTAGGCGATTTTCCAGTGTTGTAGATAAGATAGAATCCTGAATCA GTGCTGGAGAGAACAAGTCGAGAGACATGGACTTTGAAGCTCACAGTACC TGATGCATTGCTTAGCTGTCTCAAGCTCCAAGACCTGGCTTAGGGTTAGG GTTAGGGTTGTTTACGTTTTGCCTTGGAAGGCGCCCTCATCATTATTGGC ACGTTTAGTAGTGCTGATCTCTTGACCCGAAATTGTAAACAGCGATCTCT GGCAATATCTCACCCAATTCACTTTTACATGGTTGCCATTCTTCAATCAT GGTAGCTCCAATTGATTAGTCTAGTCCACGCCATAGACTGCTGCAATCTT TTTTCACCCATCATTTTCCTAGTGCCTCAATTGCAAATGGCCGTGTCACC TCATGAGAATGTTGTTCTCCCACGAGTCCTCTTCTCCAAGAAATCTCAAC TGTCACAACAGCAGGGAACATCTCTCTGTCCTCTTGTCCCCTATCAAATT TTACCTTCAGGGACTTCAAGTACTTTGGAGTATACTATCCCACTCTGAGA TATTTCCTAACGGGCTCGTTGCCCCCCCTCCCCAGACCTACACCTTGGCC TTTGTTTTACATCTTCTTAGTACTTGTATTGCTTGGTGTGCTGAGAGTAG GTTGGAGTCATGGTGCATATTTTAAGAGGGTCGAGGAGGTTGCAGTGTTT TTGTGTGGAACCATTGTAACAGGTGTGCCACCGGTCAATCCAGTGATTTC CTACTCTCCACTGTTTTGAAGACTGGCAGTCAACAAATCGGTATGATGCT ATGCACTTATACCCTGAATGGCAAAAGTGATTCTACATATACCCTCAACA CGTTAAAAAAATATGTATCACCGACTATTGTGTAAATGCTGTTTAAAAAA TTCGGGTGAAAGGATCCTTTTGACTGCTTTTGTAGGACGAGGATTTTTCT AATGGTCTGCACGCACTTGTATGCATTTATCATATGTATTGTATGTAACG TATGTATCTTATGTATTATATGTATTATATGTATTGTATGTATCATATGT ATCATATGTATCGTATGTATCATACGTATCGTATATGTATCATATGTATA ATATTCAACTGGGAAGTGATTGTACAAGTGATAGGGGCCTCTTTGGAGAG GTCTGACTGTGAAAAAAACTAATGGCGATATGAAGAAAATAACATACACC GTTCAGCACTGAATAAGTATATTGGTGGTATACCTTGTGATGTCATACTG ATTTGCAAATTCCCCCTAGTATCTGGTCAGCAGATATCTACATTTGTTCT CAATACTGTCTTGCCACCGATTTTGTTGCCATGTTAATTTCCCTAATCGG TGTAGTTTGTAGTTCAGGTCTGTGCAACGATACTATTTGCACTCCTCTGC CTTCCCCTGAACTTTTCTTGACCTTGCCGCTGCTGACATCTGGTTTCCCT CCTACTGTGCCTTGTGCTTCTTGCCCTGCACATTGCCACCAGGCTGTCGA TCTCTATGTCCTTGAACGAGCATTTTTATCAACGCATGCCTGCTCTGAAC CGCTCATCGAAGAGGCAATACGGTGCTATGAGGCTGCCTCAGATGCCAAG AAAGGGGCTGCCACCATGCGAAAGCTGGCTGAAGTTAGAAAGAGGGGCAG GAAACGCGACATGTTTGGGTAGCGCTCGATGAGATTAGTATTGTGGAATG CTGCATAGTGTGTTTAACGCTTGCTTTCTACGATTTGGTATTGTGGAGTG CGATGCAGAACGTTCTAGGGCAATTACTGTATCGTTCTAGGGCAATTACT TTTTTGTTGTTGATTTTGAAGGAGGGGACAGTCGCAAAGAGATGTGTGTG GACAAGTTGTTCATGTGTTTTGATCTTCCCTGTTCCGGTCTGGAGTTGTG CCACACTTTGCTGTAGTGTGGATGGTGTGGTGTGAATGTAGTAGGACGAG TTACCTCATGCAAGGACAAATATGTGACTCTTTGCCTTTAATAAAAACCG TTACACATCAAAGTGGCTCATAGCAGGCAGTAGGTGGTTTTGTTCGATAA CTTTCAACTCGAGATTTAGGTCTTTTGGGACTTGGTGTTGGAGCATTTAG ATCCCTGGAGGGAGGCACTGACAGTTTGCTGTTGATCCGGATGCAGCACT TTAAATAGAAGAATTTATTTTCATGGACTGGTTGCATAGCAGTCCAGAAA TTCCCGTTATCTGTGGTCATGAAAATCGGCAGTTGACGGAGCAGTATTGT GGTACGTATATACCTCAAACGATAACAGTATTTCTGCATATGTCGTCAAC AGTTTTTCTTCATCATGCGTAACTGCCTACGAACTGAAACATCAGTTAAG ACACTATTCAGATATTTTACCCAC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9192:163..4536+

>mRNA_C-tenellus_contig9192.1.2 ID=mRNA_C-tenellus_contig9192.1.2|Name=mRNA_C-tenellus_contig9192.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=495bp|location=Sequence derived from alignment at C-tenellus_contig9192:163..4536+ (Choristocarpus tenellus KU2346)
ATGGTGAAGGCTAAGAAGGCCGGGGTAGAGACCCCGTGCCTATTTATGGT
AGACAGTGCTAATACGAAGATCATTATGGAAAGGGTGGATGGGATAACTG
TCAAGCAGTTCCTGAGGGAGCGCATGGAAGCTGATCCTGATGTGGCACTG
AAGTTAGCAGGAGACATCGGGAGGGCTATTGCCAAAATGCATGATGCTCA
GGTGGTTCACGGAGATCTCACCACGTCTAACTTCATGGTTCGCAGTGGAC
CATTGCGGCGTTTAGTTGCCATCGACTTTGGATTGGCCTCGAGTCAACCT
CTACCTGAGGACAAGGCTGTCGATCTCTATGTCCTTGAACGAGCATTTTT
ATCAACGCATGCCTGCTCTGAACCGCTCATCGAAGAGGCAATACGGTGCT
ATGAGGCTGCCTCAGATGCCAAGAAAGGGGCTGCCACCATGCGAAAGCTG
GCTGAAGTTAGAAAGAGGGGCAGGAAACGCGACATGTTTGGGTAG
back to top