mRNA_C-tenellus_contig9190.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9190.1.1
Unique NamemRNA_C-tenellus_contig9190.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Match: A0A6H5KHV3_9PHAE (3-isopropylmalate dehydratase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV3_9PHAE)

HSP 1 Score: 441 bits (1135), Expect = 7.400e-152
Identity = 210/228 (92.11%), Postives = 219/228 (96.05%), Query Frame = 1 
Query:    1 LSQPMTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAKDMILQIIGDIGVAGATYRSMEFTGSSLGQLSMEERQTL 684
            +S+PMTLTEKIIA ACDR SV PNDNVWV TDVLMTHDVCGPGTIGNFYKEFGPKAKVWD +GVVIIPDHYIFTADPRANRNVDILRDFVNQQ IKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIK+PA+M+F L GEIPD+LLAKD+ILQIIGDIGVAGATYRSMEF GS+LGQLSMEERQTL
Sbjct:   70 VSEPMTLTEKIIAKACDRQSVAPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDPEGVVIIPDHYIFTADPRANRNVDILRDFVNQQDIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKSPASMQFALEGEIPDHLLAKDIILQIIGDIGVAGATYRSMEFAGSALGQLSMEERQTL 297
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BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Match: X2KY86_SCYLO (3-isopropylmalate dehydratase n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=X2KY86_SCYLO)

HSP 1 Score: 433 bits (1114), Expect = 2.140e-148
Identity = 206/228 (90.35%), Postives = 217/228 (95.18%), Query Frame = 1 
Query:    1 LSQPMTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAKDMILQIIGDIGVAGATYRSMEFTGSSLGQLSMEERQTL 684
            +S+PMT+TEKIIA AC RSSV PNDNVWV TDVLMTHDVCGPGTIGNFYKEFGPKAKVWD +GVVIIPD YIFTADPRANRNVDILRDFVNQQ IKYFYDITDRGNFK NPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIK+PA+M+F L GE+PD+LLAKD+ILQIIGDIGVAGATYRSMEF GS+LGQLSMEERQTL
Sbjct:   89 VSEPMTVTEKIIAKACGRSSVAPNDNVWVRTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDPEGVVIIPDQYIFTADPRANRNVDILRDFVNQQDIKYFYDITDRGNFKVNPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKSPASMQFALEGEMPDHLLAKDIILQIIGDIGVAGATYRSMEFAGSALGQLSMEERQTL 316
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BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Match: A0A835YVF1_9STRA (3-isopropylmalate dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF1_9STRA)

HSP 1 Score: 427 bits (1097), Expect = 6.450e-147
Identity = 203/228 (89.04%), Postives = 212/228 (92.98%), Query Frame = 1 
Query:    1 LSQPMTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAKDMILQIIGDIGVAGATYRSMEFTGSSLGQLSMEERQTL 684
            ++QPMTLTEKIIA ACD+S V PNDNVWV TDVLMTHDVCGPGTIGNFYKEFG  AKVWD +GVVIIPDHYIFTADPRANRNVDILR+F  QQ +KYFYDITDRGNFK NPDYKGVCHVALAQEGH RPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPA M+F LNGEIPDYLLAKD+ILQIIGDIGVAGATYRSMEF GS+L QLSMEERQTL
Sbjct:   18 IAQPMTLTEKIIAKACDKSVVRPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGADAKVWDNEGVVIIPDHYIFTADPRANRNVDILREFAAQQNLKYFYDITDRGNFKVNPDYKGVCHVALAQEGHCRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPATMRFALNGEIPDYLLAKDVILQIIGDIGVAGATYRSMEFAGSALSQLSMEERQTL 245
[Close]
BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Match: W7TZ20_9STRA (3-isopropylmalate dehydratase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ20_9STRA)

HSP 1 Score: 398 bits (1022), Expect = 5.880e-135
Identity = 189/225 (84.00%), Postives = 203/225 (90.22%), Query Frame = 1 
Query:   10 PMTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAKDMILQIIGDIGVAGATYRSMEFTGSSLGQLSMEERQTL 684
            PMTLTEKI+A A  + SV PNDNVWV  D LMTHDVCGPGT G F KEFG  AKVWD + V+IIPDHYIFT+DPRANRNVDILRDFV +Q IKYFYDITDRG FKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDA+FV+GTGKLL+K PA+MKF LNGEIPDYLLAKDMILQIIGDIGVAGATYR+MEF G+++ QLSMEERQTL
Sbjct:   55 PMTLTEKILARAAGKESVAPNDNVWVRADNLMTHDVCGPGTFGLFKKEFGANAKVWDRERVLIIPDHYIFTSDPRANRNVDILRDFVQEQNIKYFYDITDRGEFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFVLGTGKLLLKVPASMKFELNGEIPDYLLAKDMILQIIGDIGVAGATYRAMEFGGNAIRQLSMEERQTL 279
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BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Match: A0A7S2ZP08_9RHOD (3-isopropylmalate dehydratase (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZP08_9RHOD)

HSP 1 Score: 388 bits (996), Expect = 8.290e-132
Identity = 181/228 (79.39%), Postives = 204/228 (89.47%), Query Frame = 1 
Query:    1 LSQPMTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAKDMILQIIGDIGVAGATYRSMEFTGSSLGQLSMEERQTL 684
            + QPMT+TEKI+A A ++  V+P DNVWVN DVLMTHDVCGPGTIG F +EFG  AKV+D + VVIIPDHYIFTAD RANRNVDILRDFV +QGIKYFYDITDR +FKANPDYKGVCHVALAQEGHTRPGEV+FGTDSHTCNAGAFGQFATGIGNTDA F++GTGKLL+K PA M+F +NGE+PDYLLAKD+IL IIGDIGVAGATYR++EF+G  + QLSMEERQTL
Sbjct:   51 VQQPMTITEKILAKAAEKDFVLPGDNVWVNVDVLMTHDVCGPGTIGVFKREFGQDAKVFDKEKVVIIPDHYIFTADERANRNVDILRDFVQEQGIKYFYDITDRSDFKANPDYKGVCHVALAQEGHTRPGEVMFGTDSHTCNAGAFGQFATGIGNTDAGFILGTGKLLVKVPATMRFEMNGEMPDYLLAKDLILNIIGDIGVAGATYRTLEFSGEVIPQLSMEERQTL 278
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BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Match: A0A1X6NQJ8_PORUM (3-isopropylmalate dehydratase n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQJ8_PORUM)

HSP 1 Score: 388 bits (997), Expect = 3.940e-131
Identity = 182/228 (79.82%), Postives = 202/228 (88.60%), Query Frame = 1 
Query:    1 LSQPMTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAKDMILQIIGDIGVAGATYRSMEFTGSSLGQLSMEERQTL 684
            ++ PMTLTEKI+A A +R SV P DN+WVNTDVLMTHDVCGPGTIG F +EFG  AKVWDT+ VVIIPDHYIFT D RANRNVDILRDFVN+QGIKYFYDI DR ++K NPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGN+DA FVMGTGKLL+K PA M+F LNG +PDY++AKD+ILQIIGDIG AGATYR+MEF+G  +  LSMEERQTL
Sbjct:   65 IATPMTLTEKILAKAAERGSVRPGDNIWVNTDVLMTHDVCGPGTIGVFKREFGEDAKVWDTEKVVIIPDHYIFTEDVRANRNVDILRDFVNEQGIKYFYDIIDRSDYKVNPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNSDAGFVMGTGKLLLKVPATMRFVLNGVLPDYIMAKDLILQIIGDIGTAGATYRAMEFSGDVIDALSMEERQTL 292
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BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Match: K9W3H2_9CYAN (Homoaconitate hydratase family protein n=12 Tax=Cyanobacteria TaxID=1117 RepID=K9W3H2_9CYAN)

HSP 1 Score: 385 bits (989), Expect = 4.820e-131
Identity = 181/224 (80.80%), Postives = 199/224 (88.84%), Query Frame = 1 
Query:   13 MTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAKDMILQIIGDIGVAGATYRSMEFTGSSLGQLSMEERQTL 684
            MTLTEKI+A A  RS V P DN+WVN D+LMTHDVCGPGTIG F +EFG  AKVWDT+ +V+IPDHYIFTAD RANRNVDILRDF  +QGIKYFYDITDR +FKANPDYKGVCH+ALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDA F+MGTGKLLIK PA M+F LNGE+P YLLAKD+ILQIIGDIGVAGATYR+MEF GS++  LSME+R TL
Sbjct:    3 MTLTEKILARASGRSVVEPGDNIWVNVDLLMTHDVCGPGTIGVFKREFGADAKVWDTEKIVLIPDHYIFTADERANRNVDILRDFAKEQGIKYFYDITDRSDFKANPDYKGVCHIALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAGFIMGTGKLLIKVPATMRFLLNGEMPKYLLAKDLILQIIGDIGVAGATYRAMEFAGSTIQHLSMEDRMTL 226
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BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Match: UPI001FBA0E57 (3-isopropylmalate dehydratase large subunit n=1 Tax=Aetokthonos hydrillicola TaxID=1550245 RepID=UPI001FBA0E57)

HSP 1 Score: 383 bits (983), Expect = 3.680e-130
Identity = 179/224 (79.91%), Postives = 198/224 (88.39%), Query Frame = 1 
Query:   13 MTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAKDMILQIIGDIGVAGATYRSMEFTGSSLGQLSMEERQTL 684
            MTLTEKI+A A  RS V P +N+WV+ DVLMTHDVCGPGTIG F +EFG  AKVWD D +V+IPDHYIFTAD RANRNVDILRDF  QQGIKYFYDITDR NFKANPDYKGVCH+ALAQEGHTRPGEVLFGTDSHTCNAGAFG+FATGIGNTDA F+MGTGKLLIK PA M+F L+GE+P YLLAKD+ILQIIGDIGVAGATYR+MEF G S+ +++MEER TL
Sbjct:    1 MTLTEKILAKASGRSVVTPGENIWVDVDVLMTHDVCGPGTIGVFEREFGADAKVWDPDKIVLIPDHYIFTADERANRNVDILRDFAQQQGIKYFYDITDRSNFKANPDYKGVCHIALAQEGHTRPGEVLFGTDSHTCNAGAFGEFATGIGNTDAGFIMGTGKLLIKVPATMRFVLDGELPPYLLAKDLILQIIGDIGVAGATYRTMEFAGESIQRMTMEERMTL 224
[Close]
BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Match: A0A6M0CDJ2_9CYAN (3-isopropylmalate dehydratase (Fragment) n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0CDJ2_9CYAN)

HSP 1 Score: 375 bits (964), Expect = 5.730e-130
Identity = 174/224 (77.68%), Postives = 197/224 (87.95%), Query Frame = 1 
Query:   13 MTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAKDMILQIIGDIGVAGATYRSMEFTGSSLGQLSMEERQTL 684
            MTLTEKI+A A DR +V   +N+W+N DVLMTHDVCGPGTIG F +EFG  AKVW+ D +VIIPDHYIFTAD RANRNVDILR+F  +Q IKYFYDI DR +FKANPDYKGVCH+ALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDA+F+MGTGKLL+K PA M+F LNGE+PDYLLAKD+ILQIIGDIGVAGATYR+MEF G ++  ++MEER TL
Sbjct:    3 MTLTEKILAKAADRPTVEAGENIWINVDVLMTHDVCGPGTIGIFKREFGENAKVWEKDKIVIIPDHYIFTADERANRNVDILREFAAEQNIKYFYDIIDRADFKANPDYKGVCHIALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDAAFIMGTGKLLVKVPATMRFVLNGEMPDYLLAKDLILQIIGDIGVAGATYRTMEFAGGTVEAMTMEERMTL 226
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BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Match: D7G5X0_ECTSI (Putative homoaconitate hydratase, N-terminal part n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5X0_ECTSI)

HSP 1 Score: 375 bits (964), Expect = 1.240e-129
Identity = 175/190 (92.11%), Postives = 182/190 (95.79%), Query Frame = 1 
Query:    1 LSQPMTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAK 570
            +S+PMTLTEKIIA ACDR SV PNDNVWV TDVLMTHDVCGPGTIGNFYKEFGPKAKVWD +GVVIIPDHYIFTADPRANRNVDILRDFVNQQ IKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIK+PA+M+F L GEIPD+LLAK
Sbjct:   80 VSEPMTLTEKIIAKACDRQSVAPNDNVWVKTDVLMTHDVCGPGTIGNFYKEFGPKAKVWDPEGVVIIPDHYIFTADPRANRNVDILRDFVNQQDIKYFYDITDRGNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIGNTDASFVMGTGKLLIKSPASMQFALEGEIPDHLLAK 269
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9190.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHV3_9PHAE7.400e-15292.113-isopropylmalate dehydratase n=1 Tax=Ectocarpus s... [more]
X2KY86_SCYLO2.140e-14890.353-isopropylmalate dehydratase n=1 Tax=Scytosiphon ... [more]
A0A835YVF1_9STRA6.450e-14789.043-isopropylmalate dehydratase n=1 Tax=Tribonema mi... [more]
W7TZ20_9STRA5.880e-13584.003-isopropylmalate dehydratase n=2 Tax=Monodopsidac... [more]
A0A7S2ZP08_9RHOD8.290e-13279.393-isopropylmalate dehydratase (Fragment) n=2 Tax=R... [more]
A0A1X6NQJ8_PORUM3.940e-13179.823-isopropylmalate dehydratase n=1 Tax=Porphyra umb... [more]
K9W3H2_9CYAN4.820e-13180.80Homoaconitate hydratase family protein n=12 Tax=Cy... [more]
UPI001FBA0E573.680e-13079.913-isopropylmalate dehydratase large subunit n=1 Ta... [more]
A0A6M0CDJ2_9CYAN5.730e-13077.683-isopropylmalate dehydratase (Fragment) n=1 Tax=O... [more]
D7G5X0_ECTSI1.240e-12992.11Putative homoaconitate hydratase, N-terminal part ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9190contigC-tenellus_contig9190:12..5681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1173022.Cri9333_3477
PFAMsAconitase
Model size687
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00497,RC00976,RC00977,RC01041,RC01046,RC03072
KEGG koko:K01703
KEGG ReactionR03896,R03898,R03968,R04001,R08620,R08624,R08628,R08634,R08641,R08645,R10170
KEGG Pathwayko00290,ko00660,ko00966,ko01100,ko01110,ko01210,ko01230,map00290,map00660,map00966,map01100,map01110,map01210,map01230
KEGG ModuleM00432,M00535
Hectar predicted targeting categoryother localisation
Exons5
Evalue6.74e-132
EggNOG OGsCOG0065@1|root,COG0065@2|Bacteria,1G1J0@1117|Cyanobacteria,1H6XD@1150|Oscillatoriales
EC4.2.1.33,4.2.1.35
DescriptionBelongs to the aconitase IPM isomerase family
Cds size675
COG categoryE
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9190.1.1prot_C-tenellus_contig9190.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9190 24..5681 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790153.3056662-UTR-C-tenellus_contig9190:11..231680790153.3056662-UTR-C-tenellus_contig9190:11..23Choristocarpus tenellus KU2346UTRC-tenellus_contig9190 12..23 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790153.3191721-CDS-C-tenellus_contig9190:23..1821680790153.3191721-CDS-C-tenellus_contig9190:23..182Choristocarpus tenellus KU2346CDSC-tenellus_contig9190 24..182 +
1680790153.370048-CDS-C-tenellus_contig9190:1536..16441680790153.370048-CDS-C-tenellus_contig9190:1536..1644Choristocarpus tenellus KU2346CDSC-tenellus_contig9190 1537..1644 +
1680790153.3898823-CDS-C-tenellus_contig9190:2332..24461680790153.3898823-CDS-C-tenellus_contig9190:2332..2446Choristocarpus tenellus KU2346CDSC-tenellus_contig9190 2333..2446 +
1680790153.3999333-CDS-C-tenellus_contig9190:4293..44701680790153.3999333-CDS-C-tenellus_contig9190:4293..4470Choristocarpus tenellus KU2346CDSC-tenellus_contig9190 4294..4470 +
1680790153.412182-CDS-C-tenellus_contig9190:5564..56811680790153.412182-CDS-C-tenellus_contig9190:5564..5681Choristocarpus tenellus KU2346CDSC-tenellus_contig9190 5565..5681 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9190.1.1

>prot_C-tenellus_contig9190.1.1 ID=prot_C-tenellus_contig9190.1.1|Name=mRNA_C-tenellus_contig9190.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=225bp
MTLTEKIIANACDRSSVVPNDNVWVNTDVLMTHDVCGPGTIGNFYKEFGP
KAKVWDTDGVVIIPDHYIFTADPRANRNVDILRDFVNQQGIKYFYDITDR
GNFKANPDYKGVCHVALAQEGHTRPGEVLFGTDSHTCNAGAFGQFATGIG
NTDASFVMGTGKLLIKTPAAMKFGLNGEIPDYLLAKDMILQIIGDIGVAG
ATYRSMEFTGSSLGQLSMEERQTL*
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mRNA from alignment at C-tenellus_contig9190:12..5681+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9190.1.1 ID=mRNA_C-tenellus_contig9190.1.1|Name=mRNA_C-tenellus_contig9190.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5670bp|location=Sequence derived from alignment at C-tenellus_contig9190:12..5681+ (Choristocarpus tenellus KU2346)
CTGTCTCAGCCAATGACACTCACAGAGAAGATCATTGCCAATGCCTGCGA
TAGATCCTCAGTGGTCCCCAATGATAATGTCTGGGTGAACACTGATGTGC
TGATGACGCATGATGTGTGTGGGCCAGGGACGATCGGGAATTTCTACAAG
GAGTTTGGGCCCAAGGCAAAGGTGATACATACCTTCAGGCCCTGGTTTTG
AATACTTCATTGTAGGGTGGCTGTAAATGGTTTGTAAAGTCCGGAACAGC
GTTGTGTTGGTTTGTGGATGGCAAGTGTGAGGAAGTGGGTAGAGTAAATG
TAAATGTGGGTGGGACGATCAGCGTTGCATCTAGTTGACTTGTATGTTTT
AGGGAGGGATGGGTCCTATTGGGCACCCTGAAAAGTTGGTTCCCTTGATA
TTTTTGAGGAGGTCTTCTTCCCTGATTCTTTGAAGGTTAGGTTTTCAAAG
AATCAGGGTTAGGATTAGTTGTCACTGCGTGTGAAATTTTTTGCAGAGTT
CACAGTGTATGATGTTGGACCACAGTTATGTACCTGAGATGGTTTCACCA
TGGCCCTAAAAGTGGTTCTCCTGTGTGATAGGAAGGCGGATGCATAGGTC
TTGTCTTTGTCCTCTCTTTTGGCAATGGTCTTGTATCAGACCTTGAGCTC
TTTGTTTTTGTAGGCATTAGATTGGGTTAGGGTTAGGGTTAGTGTCTCTT
GAGGTGAACTAGAGTCACCTGCTTAATCTGTTTAGTAACTCTTTAAAAAT
TATTTTCTAGGAAGACTCTCGATACTCTTGATATGATGTTCCTGGAAAAT
TTGCAGTCGTGTACTTCGAGTCATTGTACTGAAGTGGGTTCATAGTACTC
TGTTGCACTGTGTAGGGACATGCATGCCCATGCAGAAGACGTTGTCGCCT
TGAAGGGATGTGTGCGGCTTGATCAGCTTTTTTTTTCTTTTCTTTTGAAT
CGATGCGTTAGGGTTAGGGTTAGGGTGTGCATTTGAAATGTCAAGATCGG
ATCGCTGTCCGTGGCCGTATCTGTTTTAGTAAGGGACTCCTTGTGTAAGG
GTCTTTTTTTAATTGTTTGGGTGAAAGATGATGTGAGTTCAACTGAACCC
TTACCCTATCTGATGTGCACCTTGTCAAAAAAAAATCCCATCTGATGCTC
CGTAGCACTGGAAATGCCTCCACATTTTTGGCACCATGAGACATCGTAGG
AAAACAAACATGTAACAGCTACAGTGTCAATGCCCTTCTCCACCTCAAGG
TCTGTACCGTCTTCTTCCTCAATGCACACCCTAACCCTAACCGATACAAT
CGATGCAATGCAATCAGTTTGAAGCAAACATTATGCACTTGTCCCTTAAT
GGTTGTCGAAAAAGGTATGCACTTGTCCCTTCCTGGCCCTCGTCCCTTAA
TGGTTGTCGAAAAAAGGTATGCACTTGTCCCTTCCTGGCCCTCGTCCCCT
AATGGTTGTCGAAAAAAGGTATGCACTTGTCCCTTCTTGAACCTCGTCCC
TTAATTATTGTTTAAAAAAAAAAAGGTATGGGATACTGATGGCGTTGTGA
TCATCCCAGATCACTACATCTTCACAGCTGATCCCAGAGCAAACAGAAAC
GTTGACATCCTTAGGGATTTCGTCAACCAGCAGGTGATTGAGCTAAGGGC
TTTTTGTGATTTTTGGGTTGTGTATGAGGATGCTGTGCCTCCGTTATTAA
TATCAAGGTTACCCTCTAAGTTACTCTGATATTGCTGTTTGTCCCCTGGC
CCCTGTATCTCATCACTGTATTTGGTAACTGTTTTGAAAAAAAAAAAAAA
CTGTCGTTTGATTACCATCACAACCCCCACCCCTCCCTCCAAACATGCCA
TGTTGTATATGAGATGCCTTTTTTCGAATTTTCAACATGGTGAAAGGGGA
ACTTGTCCAGGGGTGTTCCTGATTCCCCTGTACTATGTATTCTGGGTAGC
ACCTTGAGACTGAACTTGATGTACATGAAGTGGTGGGACGACATCATGAA
CAAGGAAGCAGCGAATTGTTTGCTGGACATGCTGAAACGAACACTTAACT
TAACTTAACTTAAGTGTTTTTTGACTTAACCGGTGCTGGATCTGTTGTTG
AATTTAGACCTACCTCATTCTTTCGAGTTGCCTGAAAATATTATTATTAT
TATTATTACACCATCCTCCGCTGAAAGCGCTTCCAGTTGAAACACACTTG
TGCTCCTTTTTTAAAAAGTGGGATACAGTGTGATTGAAATTGAACCATTG
AAACTGGCTCTTTAATGACACCTCTCGCTATATATATATATATATATATA
TATATATATTTATTATTGTAGGGGATCAAGTACTTCTACGACATCACAGA
CAGGGGCAACTTCAAGGCCAATCCGGACTACAAGGGTGTGTGTCATGTTG
CACTGGCACAGGAAGGACACACAAGACCAGGGGAGGTGAGTTCCTACTCC
TGTGCATTTTATTCAATGCATCCTTCTTGGTATGTTTTAAGGTATTATTC
AAAGGCTCAAAGTATCTGGGGGGGGGGGCAGCTGTCCATTCGGGGCCCAT
TTTTTACTCTGTGTACATTCATGGCTTATGCTCAAGCAAGTACCCATGCA
TCTTTTGACCTTTGTGTCACTGCTGAGTATTAGGTTAGAGAGGAAGTTGA
GTGACTCCAGATTTATGGGGGTGTTTGGTGTTAGGGTATATTGTTAGCTA
GGTGATTTGATATCAGGTCGCCTGTGCCTGTGCCACTGGCTCTATTGGGG
ATGGAACACCGTAGAGAGCGTGCTTCATCTCTTGAACTGTTTCTTATTTT
CTTATTTGTATCCAATGATATGAGTTTAAAGAAACAATATATTTTATCGG
GCATTGAATCTTTTTTACAGGGTTAGGGTTGGTGAGCACATTCTGATATT
TTGTTTATAGAGGCGTTGTTACACCACCAATGGGGACAGGGTGTATTGAC
CTAATGCAAAGAAAAAAAAAGAAGTGCTCCGGTACGAAGTCTTTTTTTTG
TTCATGGGTGGAACATACAGTGTGTATATAGGTGTTGCAGGAACATATAG
TGTGTTTGTGGGTGTTACAGGAACATGCAGTGTGTAGGCACTGAATACAT
TGGGCAGTCCTTTGGTTGATGAACATTTTAGGAACGACATGAAGCAGTCG
TTTTGTATAGCACTGTAGTGAATCTGTACTTGGCAGATTGCAGCTGCTGA
GAGGTCATACTTGGTGGATTTCTCAGTAGGAATTTGATCACCACAATGCC
GAACATTCATTCACCTTGGGGATTGATATTCACCTTAGGGAAGGAAGAAG
TCGCTGGAGGCAAACATGTATTAGTTTTCACTTTAATAGATTGTCGGGTT
AGGGTTAGGGTTATTGTAACTTTTGCGCAAGTCTCCTCTTTGCATTTCAT
TCGCGCTGAAGTTTTAACACGATTTACCTTAATGGGATAAATCTTAATGG
GATAAACCTTAATGGGATAAACCTTAATCGGATATACCTTACTCGGATAT
ACCTTAATCGGATATACCTTAATCGGATATACCTTAATGGGATAAACCTT
AATGGGATATACCTTAATGGGATATACCTTAATGGGATATACCTTAATGG
GGTATACCTTAATGGGATAAACCTTAATGGGATAAACCTTAATGGGATAT
ACCTTAATGGGATATACCTTAATGGGGGTATACCTTAATGGGGTATACCT
TGATGGGTGTCGAGGGTAGGCGGCCTGTGCATGGTGAAGTTCTGTTCATG
GACATGATGGACAAGGACTTGTGTGGGTCCATTCCACCTGACCTCTCTGA
CTGTTCTGACTGTAGAAGTGCTGTATGACTCATCTTTATCCTTGAATGGG
TGTGCAATCAAGGCCAAGACCGGGTTGCTGTTGCTAGGGTATCATTTTGT
GTCCATGTTCAAGAAACAGTCCATTGCGTGGCTGTGGATAGGGTCATGAG
ATGAGACGTGAGAAACACCTAGTAGTCCTGGTTCATTGATGATGACTACT
CCCTCTCCACCTGGCCTTGTTTGCAGGAGTAGGACTATATTTTATCAGTA
GGTCTGACAGATGCTTGGGGTTGTTAGGGTTAGGGTTAGGGTTATCGGCT
TAGTCCTTCGGTCAAGAATCTATTTTCCCTTATTTCCACGTTTTGTTTAG
GTCAAACACTATCTTTACAAGTCTACTCTACAAGTCTCTAAGTGTATCAC
ACGTCCCATCACATCACAAGTCCATCCGCAGTCAGTGTGCTCTAGAGATG
TTTGTACCTTCCCCAATCAATAATATGTGCAGGTTTTGTTTGGGACGGAC
TCCCATACGTGTAATGCTGGCGCCTTTGGGCAGTTTGCCACTGGTATTGG
GAACACTGACGCATCGTTTGTGATGGGAACTGGCAAGCTACTCATCAAGA
CCCCCGCAGCCATGAAGTTTGGGTTGAATGGCGAGATCCCTGACTATCTC
CTTGCCAAGGTTTGTAGTTCCTGGTTGGGAGGGAATGATGATGCTTGCAA
TGAATGAGGCAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGTT
GGTTGGTGTGGTGTGGTTGGGAGGTGGGGGGGTGTGTGGTGATGTTTTTG
TATATTGGTTGGGCTTGATGAACGTGTGGTGTTGCGATAAATTTGTATGT
GGAAGAGGAGGAGGGGGGGGGTTGAACTGATACCAGATGGGCTCCAGTTT
GTACAATACTAGGCTATTGTTATTTTGGGTTAGGGGGAAAGAGGGACAGA
CTTAGGGTTAGGTGCTATTTTGACGTATGAAATAAATGGACTTAGGGTTA
GGGTTAGGTTTAGGTTTAGGTACATTTTGGGGGTGTACATTGCGTAGTTA
TGTTTTTTTTAATAGCTATTTGGGTTAGGGTCAGGGTTTCTGAATTGTCA
TGGTTTGGCTTGACTGTGCTCCTGCTGAAGATTTTCTGATTGCATTCCGT
TTATTGCATTGCAGACAGATTACGACATGTGCCTTACATGTTGTGTGCAT
TAGTGTGGTGAAAAGTGCTGTCCCCCAAGGACTCACCATGACTCACCAAG
GGGTCTAATGAATGCATCAGCATTTTGTAGAACCTACCCCCCCTTCCTCC
CTCATTTCACCTCAAACCTGGAGTGACTCAGGTTGCTCTGTAGCACTAAA
CTACGATACTGTAGCCCTAACCCTAACCTTCTAACCTGGCTTGGGGCTAA
GGACCAGCACCACTTCCTCCTTTGCACAACCACCCTCGTGTCCTGCATGG
ACTCCCTTCAACTTGTTTTCAGTTACACACACACACACACACACACACAC
CATACTTCTTCACAGACTGCTAGAAGCACCCTCTTGAGAGTTCTCACATG
TAATTCGAGTGTAAGGTCCACCATGATGCCTTGACACTTACCATCCACAT
CAGGTAAAGCATACAGTGGCCAAGTAAGATCCCCCAACTGCTCCTTACAA
CACTCCTTACAACACATCTTACTATACTGCTGCTTCTTCTTCCCCCGATG
TGTTGTAACATTTGTGGGTTTGTTTGTTGGGTGTTTGCCTTTGTTGTTAT
CAGGATATGATCTTGCAGATAATTGGGGACATTGGCGTGGCTGGCGCAAC
CTACCGTTCTATGGAATTTACTGGCTCTTCCCTTGGGCAGCTCTCCATGG
AAGAACGCCAAACCCTGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig9190:12..5681+

>mRNA_C-tenellus_contig9190.1.1 ID=mRNA_C-tenellus_contig9190.1.1|Name=mRNA_C-tenellus_contig9190.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=675bp|location=Sequence derived from alignment at C-tenellus_contig9190:12..5681+ (Choristocarpus tenellus KU2346)
ATGACACTCACAGAGAAGATCATTGCCAATGCCTGCGATAGATCCTCAGT
GGTCCCCAATGATAATGTCTGGGTGAACACTGATGTGCTGATGACGCATG
ATGTGTGTGGGCCAGGGACGATCGGGAATTTCTACAAGGAGTTTGGGCCC
AAGGCAAAGGTATGGGATACTGATGGCGTTGTGATCATCCCAGATCACTA
CATCTTCACAGCTGATCCCAGAGCAAACAGAAACGTTGACATCCTTAGGG
ATTTCGTCAACCAGCAGGGGATCAAGTACTTCTACGACATCACAGACAGG
GGCAACTTCAAGGCCAATCCGGACTACAAGGGTGTGTGTCATGTTGCACT
GGCACAGGAAGGACACACAAGACCAGGGGAGGTTTTGTTTGGGACGGACT
CCCATACGTGTAATGCTGGCGCCTTTGGGCAGTTTGCCACTGGTATTGGG
AACACTGACGCATCGTTTGTGATGGGAACTGGCAAGCTACTCATCAAGAC
CCCCGCAGCCATGAAGTTTGGGTTGAATGGCGAGATCCCTGACTATCTCC
TTGCCAAGGATATGATCTTGCAGATAATTGGGGACATTGGCGTGGCTGGC
GCAACCTACCGTTCTATGGAATTTACTGGCTCTTCCCTTGGGCAGCTCTC
CATGGAAGAACGCCAAACCCTGTAA
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