mRNA_C-tenellus_contig9125.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9125.2.1
Unique NamemRNA_C-tenellus_contig9125.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9125.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9125contigC-tenellus_contig9125:3221..4114 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size896
Hectar predicted targeting categoryother localisation
Exons1
Cds size894
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790148.5383744-CDS-C-tenellus_contig9125:3220..41141680790148.5383744-CDS-C-tenellus_contig9125:3220..4114Choristocarpus tenellus KU2346CDSC-tenellus_contig9125 3221..4114 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9125.2.1prot_C-tenellus_contig9125.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9125 3221..4114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9125.2.1

>prot_C-tenellus_contig9125.2.1 ID=prot_C-tenellus_contig9125.2.1|Name=mRNA_C-tenellus_contig9125.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=298bp
VNENRSGAEEFARMHERSGGATSSNLRYNGSRTINAYNVDRTFRLRSKSL
PTPRYIDEEESDVSTPATPSMPPLTARKWAVKGLVQAKDEDKNLSASVKG
GESCNEGLGSGLGGEINGTGSIGVEKLGRQYEGPGEVTPSNLRNRTYYGS
EYTPNTTFGSGLRSPPIRGFGGEGMSDVGSLTDSNVPPLATRRWTAKNLI
RTRDEERLLRVGTSCNEGLGSEGRLMVNGSEEGPGGVVQSKIKDSIPDSA
SDYTIDSTFESGLRSLPTRGLGYEVLEGTKRGGWEGDSKGSEEAHFR*
back to top

mRNA from alignment at C-tenellus_contig9125:3221..4114+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9125.2.1 ID=mRNA_C-tenellus_contig9125.2.1|Name=mRNA_C-tenellus_contig9125.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=894bp|location=Sequence derived from alignment at C-tenellus_contig9125:3221..4114+ (Choristocarpus tenellus KU2346)
GTCAACGAGAATAGATCCGGCGCCGAGGAGTTCGCCAGAATGCACGAGAG
GTCTGGGGGAGCAACATCGTCAAACTTGAGATATAATGGATCCCGTACCA
TCAATGCCTACAACGTGGATCGGACCTTCAGGTTGAGGTCGAAGTCCTTA
CCAACACCACGTTATATTGACGAGGAGGAGTCAGATGTTTCCACACCAGC
GACTCCCAGCATGCCTCCTTTGACCGCCCGCAAATGGGCTGTGAAAGGTC
TTGTCCAGGCCAAGGATGAAGACAAGAATCTATCGGCCAGCGTGAAAGGT
GGGGAGTCATGTAACGAAGGATTAGGTTCTGGGCTGGGGGGGGAGATCAA
TGGAACCGGATCCATTGGCGTGGAGAAGCTAGGTCGACAGTACGAGGGAC
CTGGGGAGGTTACACCGTCCAATTTGAGAAACAGAACATATTATGGCAGT
GAATACACTCCGAATACGACCTTCGGGTCAGGTTTGAGGTCACCTCCAAT
ACGAGGGTTCGGAGGTGAGGGCATGTCAGATGTTGGCTCACTTACAGATT
CCAATGTACCTCCGTTGGCTACCCGTCGTTGGACGGCGAAGAACCTTATA
CGGACGAGGGATGAGGAGAGACTTTTGCGTGTGGGGACATCATGCAATGA
AGGGCTGGGTTCTGAGGGGAGGTTGATGGTCAATGGAAGTGAAGAGGGAC
CTGGCGGGGTAGTACAGTCGAAGATAAAAGACAGCATACCTGATAGTGCT
AGTGACTACACCATAGATTCGACCTTTGAGTCAGGGTTGAGATCACTGCC
AACACGAGGTCTTGGATATGAGGTCTTGGAAGGGACCAAACGGGGAGGTT
GGGAGGGGGATTCCAAGGGGAGTGAAGAGGCTCATTTCCGGTAG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9125:3221..4114+

>mRNA_C-tenellus_contig9125.2.1 ID=mRNA_C-tenellus_contig9125.2.1|Name=mRNA_C-tenellus_contig9125.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=894bp|location=Sequence derived from alignment at C-tenellus_contig9125:3221..4114+ (Choristocarpus tenellus KU2346)
GTCAACGAGAATAGATCCGGCGCCGAGGAGTTCGCCAGAATGCACGAGAG
GTCTGGGGGAGCAACATCGTCAAACTTGAGATATAATGGATCCCGTACCA
TCAATGCCTACAACGTGGATCGGACCTTCAGGTTGAGGTCGAAGTCCTTA
CCAACACCACGTTATATTGACGAGGAGGAGTCAGATGTTTCCACACCAGC
GACTCCCAGCATGCCTCCTTTGACCGCCCGCAAATGGGCTGTGAAAGGTC
TTGTCCAGGCCAAGGATGAAGACAAGAATCTATCGGCCAGCGTGAAAGGT
GGGGAGTCATGTAACGAAGGATTAGGTTCTGGGCTGGGGGGGGAGATCAA
TGGAACCGGATCCATTGGCGTGGAGAAGCTAGGTCGACAGTACGAGGGAC
CTGGGGAGGTTACACCGTCCAATTTGAGAAACAGAACATATTATGGCAGT
GAATACACTCCGAATACGACCTTCGGGTCAGGTTTGAGGTCACCTCCAAT
ACGAGGGTTCGGAGGTGAGGGCATGTCAGATGTTGGCTCACTTACAGATT
CCAATGTACCTCCGTTGGCTACCCGTCGTTGGACGGCGAAGAACCTTATA
CGGACGAGGGATGAGGAGAGACTTTTGCGTGTGGGGACATCATGCAATGA
AGGGCTGGGTTCTGAGGGGAGGTTGATGGTCAATGGAAGTGAAGAGGGAC
CTGGCGGGGTAGTACAGTCGAAGATAAAAGACAGCATACCTGATAGTGCT
AGTGACTACACCATAGATTCGACCTTTGAGTCAGGGTTGAGATCACTGCC
AACACGAGGTCTTGGATATGAGGTCTTGGAAGGGACCAAACGGGGAGGTT
GGGAGGGGGATTCCAAGGGGAGTGAAGAGGCTCATTTCCGGTAG
back to top