mRNA_C-tenellus_contig8977.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8977.1.1
Unique NamemRNA_C-tenellus_contig8977.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8977.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8977contigC-tenellus_contig8977:375..3448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1599
Hectar predicted targeting categoryother localisation
Exons3
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790140.3624117-UTR-C-tenellus_contig8977:374..15361680790140.3624117-UTR-C-tenellus_contig8977:374..1536Choristocarpus tenellus KU2346UTRC-tenellus_contig8977 375..1536 -
1680790140.4000356-UTR-C-tenellus_contig8977:2950..30681680790140.4000356-UTR-C-tenellus_contig8977:2950..3068Choristocarpus tenellus KU2346UTRC-tenellus_contig8977 2951..3068 -
1680790140.411564-UTR-C-tenellus_contig8977:3399..34481680790140.411564-UTR-C-tenellus_contig8977:3399..3448Choristocarpus tenellus KU2346UTRC-tenellus_contig8977 3400..3448 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790140.3773017-CDS-C-tenellus_contig8977:1536..15821680790140.3773017-CDS-C-tenellus_contig8977:1536..1582Choristocarpus tenellus KU2346CDSC-tenellus_contig8977 1537..1582 -
1680790140.386986-CDS-C-tenellus_contig8977:2726..29501680790140.386986-CDS-C-tenellus_contig8977:2726..2950Choristocarpus tenellus KU2346CDSC-tenellus_contig8977 2727..2950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8977.1.1prot_C-tenellus_contig8977.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8977 1537..2950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8977.1.1

>prot_C-tenellus_contig8977.1.1 ID=prot_C-tenellus_contig8977.1.1|Name=mRNA_C-tenellus_contig8977.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=90bp
MTSRISAQDGTVASGTGWGTSYTKSTPVSNSRDKRWLKSVKDADKVEFFG
DERFDATEYAQEFFIKHNASRATERCEQLEGMRHQTGEM*
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mRNA from alignment at C-tenellus_contig8977:375..3448-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8977.1.1 ID=mRNA_C-tenellus_contig8977.1.1|Name=mRNA_C-tenellus_contig8977.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3074bp|location=Sequence derived from alignment at C-tenellus_contig8977:375..3448- (Choristocarpus tenellus KU2346)
GGAGCGTTCGATAGCAGGTGTTTGTCCAGGAAGAAGAGAGTGGACTGAAG
TGAGTCTATTCCAATATGCTGACGTGTCCTCTATCAATAAACAAGGCAAT
GACTCTTGGTGTGCAGTCACGGATGCCGCATAGTGTTCTTCCCCCATTAG
TAGATGCTGGATGCCATTTCCTCTTCGCCATGCACGGTCGTACTTTCCAG
ATTTCATCAAATGTAACTGTGTCGACAATGCGTAGATGGACCAACATAGG
GAATGCACTCCATTGCTCTTTGCCGACATGTCGTGCGAGTACTGACATGT
AAATGTGGGTGTGTCAGGGTGTACCAGTTGCACTGTGCTCACTACCGCCC
TATCACTACCTGTTTTCGTTGCCTGACAAGTCCTTAGGATTAACTGCGGC
TGTGAAATTGGGGAAAGAGACTACCGGGTCATTCATCTTTCATTCGAAGG
CAGATAGTCTATTTTCCCTATCGTTACCCACAAGTCTATAGCTGTGCAAT
GACATCAAGGATATCGGCGCAAGATGGAACCGTGGCAAGCGGGACTGGTT
GGGGAACGTCCTACACGAAGTCCACACCAGTTAGTAACTCAAGAGACAAG
CGTTGGCTCAAATCAGTCAAAGACGCGGACAAGGTGGAGTTCTTCGGGGA
TGAGCGCTTCGATGCAACGGAGTACGCCCAGGAATTCTTCATCAAGCACA
ACGCGAGCCGAGCGACTGAAAGGTGATTTTATATCACCCTCCAACCCCAC
CTTGATGTTTAAGGGGGCGTCCTTGTGGTTCGATTATTATCCATGCCCAA
GGTTGATAGCTCCTCTCGAAATCCGTGCAACTTGCCGAATGTAGAGGAGA
GAGGGTTGAGGAAACATATAGTGACACCCCCCCCTAAACGCTGTGCTCAA
ATCAATTGTACAAAAGGAACTAAACCCAAGTCCAGTGCAGCAACTAAGCT
TGCAATCATGAATTGAAGTGATGAATCATGTGGGTGGACATAGATACCTG
TATATTTCCTTGACATTCATCTGTTTCCCTTCAGCTGGTGCAGAAACAAC
TCCAATCTTATTTCTTCAATGTAGTCTTTCTTGAGATTCAATGCTTTCTG
TTTCTAAATTTCTCAAAAACATCGATTGCCCCCTTCCCTTCAAGCCTTAA
CCATGCGTTAGTATCCCTAAAAGCCTTCCACTGCACAGTTCCCATTATTG
GTTACATTTGGCAACAGTTAGTAGCTTGATCCACACTTTGAGTGATCAGG
TCTCACTAATGTAGACCAAGTGCATCTTTTGGATGTTGTAACAAGTATAT
GAAAGTGTCTGTCCTATCCTGACTGTTTGTGGTTTATCTTTATCGAGCAG
TTATTGAGTGAGAGGTACAATTGTACCTTCCAAGCGATGAAATAGTTCAC
TATGGGAATGGACATTGAGTATCTCCCTGGTGTACCATCTCTCTCATGGC
TTCAACTCACAGCTTTGTTGGTGCTCATTTCCTTAAAATTTCGCACTGTG
TACTCCTATCACAAATATGAGTCATTACCAGTAGCCCTATCCATAGCCCT
GGCGTTTTTTGTTCCTCTTACCCTAGCTCTATAATTTGTCGTTAACCCTA
ACCCTAAGCCTAACCCTAAGCCTATCATCGATCGTCTCTGTTACAATATC
AGTAACCGCACCATGTTGCTCACTGGTCATTCATATTGCTGACCTTGATT
GCATCAAACCTATTTGCTAAACCTACACGCTGCACATGATCCAGTCCCTG
ATGAAGCCTTGACACACCTTGTTCTGTTTCCTAACCTCAAGTGCAGACCG
GTGTATTTTTTTTCTTAATATCCCTATTCCCTAACCTCTAAAAATGTATT
CAATGTGTTTGGGTAGGTGTGAACAGCTGGAGGGGATGAGGCATCAGACA
GGTGAGATGTAAACATGGGCACATCAGCTGTCAACATCAGGTGTGGTGTG
GATAAAGACCTGCCATGATCCTTCCTGCTCCTTTCCATGCCAAGGTTTTC
CCATGTGTGTATGTCTCATGGAATTGCATACGACTGATAGGACCCTATAG
AGTGTTATGGTACTAGGCTGTGGTATGTAAGTACGCGATTCTATCAATGA
TCGATAGAAATGTTCAAGTACATCATTGTTGATTGTTGATTGTTGACATT
CAAGTACATCATTGTTGATTGTCGACATTCCTAGCGATACTAGGGAAATG
AACAGGTAGCCTAACAATTCGATTTTGAAAGACTTGGATGGAGGTAGGAG
GTTGGCGCAAGTACATACGGAGCAGGTCAGATACCTTGTTTTGTGCCTGT
AGTTGAAAGGTGCAAAGTTGAAATTCGTCCCGGGAAAATTCATCCCCCCC
CGTGGATCTCGGCCTCCCAGAATGGGCACCAGAGTGAAAGTATCTTAGAG
GGTACGAATTTTGCCCTGTTTGTCCTTTTGGGGCTTGGCTTCCCATGTGT
TTTTTTATGAATTTTCCTACTCCAAAACGTTTCGGAGTAGGTAAAATGTA
TACGTTATGAAAAGGTGTATCCGGAACATAGATATTGACACTTCCTAACA
AACACAATAGTCAAAATTACATCAAAATCGCAACATTTGATTTTGACCCC
CAAATGGACACGACTCTACCCTCTGACATGCTTTGGCTCACCATACAAGT
TTTACCCAGGCAGCTCAGGACCGCTAGGATAGTGTTTATATTATCCCTAC
TATCTCCATTCTCTTCCTTGATGAAGCAGTAGAGCAAGTCATGCATCGAT
TCGAGGCACATCTAATTGCTGGTAACGTTGGTGCACCAGGCGTGCTGTTT
CTGTTCTTGGTGCTACTGAAGATTTTTTTCATGCTTCGAAGTATTCAGCA
TACCGCACACCGCTTGCGAGCACGTTCTTTACAGTGCATCACCACCTATG
ATAAGGCGTGTGTCTATCCGGCCCCGTCCGTCCATGCACGAGGTCCCTTC
TCCCTCCCCCCTCGACGTGCCTGCGACCTTTTCTTTTGAGGCACGGGCCT
CCTCTCCTCTACTGCTTCCTTCCTTACCCCATTCGGAGCTGCACACCTCT
TTCATTCCCTGATGCCTTTCCTCC
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Coding sequence (CDS) from alignment at C-tenellus_contig8977:375..3448-

>mRNA_C-tenellus_contig8977.1.1 ID=mRNA_C-tenellus_contig8977.1.1|Name=mRNA_C-tenellus_contig8977.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=270bp|location=Sequence derived from alignment at C-tenellus_contig8977:375..3448- (Choristocarpus tenellus KU2346)
ATGACATCAAGGATATCGGCGCAAGATGGAACCGTGGCAAGCGGGACTGG
TTGGGGAACGTCCTACACGAAGTCCACACCAGTTAGTAACTCAAGAGACA
AGCGTTGGCTCAAATCAGTCAAAGACGCGGACAAGGTGGAGTTCTTCGGG
GATGAGCGCTTCGATGCAACGGAGTACGCCCAGGAATTCTTCATCAAGCA
CAACGCGAGCCGAGCGACTGAAAGGTGTGAACAGCTGGAGGGGATGAGGC
ATCAGACAGGTGAGATGTAA
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