mRNA_C-tenellus_contig8881.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8881.1.1
Unique NamemRNA_C-tenellus_contig8881.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig8881.1.1 vs. uniprot
Match: D7G786_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G786_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.600e-7
Identity = 55/182 (30.22%), Postives = 68/182 (37.36%), Query Frame = 2 
Query:  632 MACAPRFFKECMRAFFDRNISYWHRQWLERRKQLSMASRGCPSDDAFARADLEMTDAGKGVQADADVTVDGDNTVXXEGEXXXXXXGLS------------------------------------------DI------DDFDDVNIEEMQETWCALRTLGWFSLLRDTFTNAMYSKVLAYV 1033
            MA A   F   MRAFFDRN+ +WHR WLE R                        + G G+    D    G+     +GE  XXXX                                             D+      DDF D++ EE+   W  LR LGWFSLL+D F+  M+S VLAYV
Sbjct:    1 MAGARGDFHGTMRAFFDRNLRFWHRSWLEERXXXXXXXXXXXXXXXXX-----XVEGGDGMDVSDDDLGAGEENRGSDGEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVGXXXXGDDFSDMSREELSALWGVLRRLGWFSLLQDAFSGVMFSNVLAYV 177
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8881.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G786_ECTSI4.600e-730.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8881contigC-tenellus_contig8881:1888..3328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G786
Preferred nameAPC2
PFAMsANAPC2,Cullin
Model size1051
Max annot lvl2759|Eukaryota
KEGG koko:K03349
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000152,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009553,GO:0009561,GO:0009987,GO:0010498,GO:0015630,GO:0016567,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031145,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0051603,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons2
Evalue7.09e-08
EggNOG OGsKOG2165@1|root,KOG2165@2759|Eukaryota
Descriptionubiquitin protein ligase binding
Cds size1023
COG categoryS
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790134.032814-CDS-C-tenellus_contig8881:1887..21211680790134.032814-CDS-C-tenellus_contig8881:1887..2121Choristocarpus tenellus KU2346CDSC-tenellus_contig8881 1888..2121 -
1680790134.0438447-CDS-C-tenellus_contig8881:2511..33001680790134.0438447-CDS-C-tenellus_contig8881:2511..3300Choristocarpus tenellus KU2346CDSC-tenellus_contig8881 2512..3300 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790134.0556624-UTR-C-tenellus_contig8881:3300..33281680790134.0556624-UTR-C-tenellus_contig8881:3300..3328Choristocarpus tenellus KU2346UTRC-tenellus_contig8881 3301..3328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8881.1.1prot_C-tenellus_contig8881.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8881 1888..3300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8881.1.1

>prot_C-tenellus_contig8881.1.1 ID=prot_C-tenellus_contig8881.1.1|Name=mRNA_C-tenellus_contig8881.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=341bp
MACLGNTPTPSQLDLLPGHTQVHPPDVVDTAWAALLKELDGFPTDLCDIG
IQQQKDSFVTRLVNQLVVLQGTGLVDVLRCHILQDLNRVVQADIVPSFWR
SFQGSDERRSQGDRENTEGGGKHGKWQRLQYVRVTKAMRLLMRRVEEHLS
IVRVLDRAILLATRAGVEVTGKEFEAEGLNSSMIATNSIEDRYRSSLTAQ
VMACAPRFFKECMRAFFDRNISYWHRQWLERRKQLSMASRGCPSDDAFAR
ADLEMTDAGKGVQADADVTVDGDNTVDSEGEDEGEDDGLSDIDDFDDVNI
EEMQETWCALRTLGWFSLLRDTFTNAMYSKVLAYVDQRWV*
back to top

mRNA from alignment at C-tenellus_contig8881:1888..3328-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8881.1.1 ID=mRNA_C-tenellus_contig8881.1.1|Name=mRNA_C-tenellus_contig8881.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1441bp|location=Sequence derived from alignment at C-tenellus_contig8881:1888..3328- (Choristocarpus tenellus KU2346)
CGTTGATCGTTGGCATCAATGCAACAACATGGCATGCTTGGGAAACACCC
CTACCCCTTCACAACTTGACCTGCTTCCTGGACATACCCAAGTGCATCCC
CCAGATGTGGTCGACACAGCATGGGCAGCACTGTTGAAGGAACTAGACGG
ATTCCCGACTGACCTATGCGATATTGGGATTCAACAACAGAAAGATAGTT
TCGTCACACGGTTGGTGAACCAACTAGTAGTTCTACAAGGAACTGGACTG
GTGGATGTCCTACGTTGCCATATCCTCCAAGATTTAAATAGGGTGGTGCA
AGCGGATATAGTTCCTTCTTTCTGGCGGTCCTTTCAAGGATCTGATGAGA
GGAGATCGCAGGGAGATAGAGAGAATACAGAGGGAGGTGGTAAGCATGGA
AAATGGCAGCGGTTACAATATGTTAGAGTGACGAAGGCCATGAGGCTTCT
AATGCGAAGGGTGGAGGAGCATCTGTCTATAGTCCGCGTACTAGATCGCG
CCATTCTACTGGCGACCAGAGCAGGGGTTGAAGTGACTGGGAAGGAGTTT
GAGGCTGAAGGCTTGAACTCGTCAATGATAGCAACAAATAGCATTGAGGA
TCGTTACCGCTCTTCCCTCACAGCGCAGGTGATGGCATGCGCGCCTAGGT
TTTTCAAAGAGTGCATGCGTGCTTTCTTTGATCGGAACATCTCCTACTGG
CATCGGCAGTGGTTGGAGCGACGAAAGCAGTTGAGTATGGCCTCGCGAGG
GTGTCCAAGTGATGACGCCTTTGCTAGAGCAGATCTGGAGATGACGGATG
CGGGGAAAGGAGTCCAGGTGACAATAGAGGCAACAATAGATTCTTTATCA
TCGCGTACAGTAGCACACGATAGTCACGTTTTGTCCCCAAGGAATTGTGC
GGAACACAGTTAGCGCAAGCAATATCGTATCTGTCTCCTAATATTTAGAA
GTATTTGTTGAGTGATACAACTCCATAGGGATATTGTTGTGCTTCCCTTT
GGTGGACGACGTGGACGCTATGTTCGGGGTCGTCGCGCGTGCTATGTAAA
CAACGCTATGCTCCCATGTCGTTCCTACAGGGTAGGAAGCTGATCTTGTA
TTGCACTGAACCCTATCGGCAGGTAGGCAGTACAAAGGTTGCCCTGCATT
CCCCATTCTAATGTTCCTTTCCACCTTTTTCTCCCACTGGGGTTCTGATC
TTTGAAGGCTGATGCGGACGTTACTGTCGATGGGGACAACACAGTGGACA
GCGAGGGAGAGGATGAGGGGGAGGATGATGGACTTTCAGATATTGATGAT
TTTGATGATGTTAATATTGAAGAGATGCAGGAGACTTGGTGTGCCTTAAG
GACCCTGGGATGGTTTTCTCTGCTAAGAGACACCTTCACCAATGCCATGT
ACTCCAAGGTGTTGGCATATGTGGACCAAAGGTGGGTGTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8881:1888..3328-

>mRNA_C-tenellus_contig8881.1.1 ID=mRNA_C-tenellus_contig8881.1.1|Name=mRNA_C-tenellus_contig8881.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1023bp|location=Sequence derived from alignment at C-tenellus_contig8881:1888..3328- (Choristocarpus tenellus KU2346)
ATGGCATGCTTGGGAAACACCCCTACCCCTTCACAACTTGACCTGCTTCC
TGGACATACCCAAGTGCATCCCCCAGATGTGGTCGACACAGCATGGGCAG
CACTGTTGAAGGAACTAGACGGATTCCCGACTGACCTATGCGATATTGGG
ATTCAACAACAGAAAGATAGTTTCGTCACACGGTTGGTGAACCAACTAGT
AGTTCTACAAGGAACTGGACTGGTGGATGTCCTACGTTGCCATATCCTCC
AAGATTTAAATAGGGTGGTGCAAGCGGATATAGTTCCTTCTTTCTGGCGG
TCCTTTCAAGGATCTGATGAGAGGAGATCGCAGGGAGATAGAGAGAATAC
AGAGGGAGGTGGTAAGCATGGAAAATGGCAGCGGTTACAATATGTTAGAG
TGACGAAGGCCATGAGGCTTCTAATGCGAAGGGTGGAGGAGCATCTGTCT
ATAGTCCGCGTACTAGATCGCGCCATTCTACTGGCGACCAGAGCAGGGGT
TGAAGTGACTGGGAAGGAGTTTGAGGCTGAAGGCTTGAACTCGTCAATGA
TAGCAACAAATAGCATTGAGGATCGTTACCGCTCTTCCCTCACAGCGCAG
GTGATGGCATGCGCGCCTAGGTTTTTCAAAGAGTGCATGCGTGCTTTCTT
TGATCGGAACATCTCCTACTGGCATCGGCAGTGGTTGGAGCGACGAAAGC
AGTTGAGTATGGCCTCGCGAGGGTGTCCAAGTGATGACGCCTTTGCTAGA
GCAGATCTGGAGATGACGGATGCGGGGAAAGGAGTCCAGGCTGATGCGGA
CGTTACTGTCGATGGGGACAACACAGTGGACAGCGAGGGAGAGGATGAGG
GGGAGGATGATGGACTTTCAGATATTGATGATTTTGATGATGTTAATATT
GAAGAGATGCAGGAGACTTGGTGTGCCTTAAGGACCCTGGGATGGTTTTC
TCTGCTAAGAGACACCTTCACCAATGCCATGTACTCCAAGGTGTTGGCAT
ATGTGGACCAAAGGTGGGTGTGA
back to top