mRNA_C-tenellus_contig888.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig888.3.1
Unique NamemRNA_C-tenellus_contig888.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Match: A0A7S3XKA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKA2_HETAK)

HSP 1 Score: 127 bits (319), Expect = 2.560e-31
Identity = 63/127 (49.61%), Postives = 81/127 (63.78%), Query Frame = 3
Query:  489 SGAESTSPPS-----IDSLKLKLSEAPESINFEDTMNAIAESYNYTPKRFDNGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNSHGNIRAFMKSGWEGVSFPDGLSLTPK 854
            S  E  SPP      +   K+KL  +P+ + FE+TM  I+ +Y+YT K F NG  S+ AG N GSCKV S GK+A L+  + L CFGEH+R VL DP+G +HGNIR FM  GW G+ F +GL LT K
Sbjct:   48 SNEEGVSPPGGLPRQVVDFKIKLDSSPDDVFFEETMGIISSNYDYTEKPFKNGELSNAAGENGGSCKVFSFGKLAVLSEQQTLNCFGEHYRDVLSDPDGTAHGNIRNFMTKGWNGIEFGEGLGLTLK 174          
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Match: A0A813DTD3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DTD3_POLGL)

HSP 1 Score: 134 bits (337), Expect = 3.240e-30
Identity = 64/111 (57.66%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  519 IDSLKLKLSEAPESINFEDTMNAIAESYNYTPKRFDNGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNSHGNIRAFMKSGWEGVSFPDGLSLTP 851
            I +L+ + S     + F +T+ AIA  + YTPKRF NG   S AG NEGSCKV S+GK+AG +  EVL CFGEH++ VL DP G SHGNIRAFMK GW GV FPDG++L P
Sbjct:  356 IKALRARFSAGQSELAFAETLAAIAADFEYTPKRFVNGGVESAAGSNEGSCKVFSLGKLAGFSEAEVLACFGEHYQQVLGDPAGTSHGNIRAFMKHGWAGVDFPDGVALEP 466          
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Match: UPI001C559F94 (HopJ type III effector protein n=1 Tax=Aquimarina litoralis TaxID=584605 RepID=UPI001C559F94)

HSP 1 Score: 116 bits (290), Expect = 6.350e-28
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 3
Query:  537 KLSEAPESINFEDTMNAIAESYNYTPKRFDNGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNSHGNIRAFMKSGWEGVSFPDGLSLTPK 854
            KL + PE I FE+T+N I   Y++TP  F NG  +++ G N GSCK+ S  K+  LT +E L CFGEH+++VL+DPNG+SH NIR FMK+GWE +SF +  +LT K
Sbjct:    9 KLRQTPEEIIFEETINVIDTYYSFTPSSFTNGEINNEVGQNSGSCKLFSFAKLQNLTQEETLYCFGEHYKNVLQDPNGSSHQNIRNFMKTGWEKLSFKE-QALTEK 113          
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Match: UPI001F45A381 (HopJ type III effector protein n=1 Tax=Polaribacter sp. DS7-9 TaxID=2836891 RepID=UPI001F45A381)

HSP 1 Score: 115 bits (288), Expect = 1.190e-27
Identity = 57/109 (52.29%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  519 IDSLKLKLSEAPESINFEDTMNAIAESYNYTPKRFDNGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNSHGNIRAFMKSGWEGVSFPDGLSL 845
            I   K KL      I F +TM  I ++YN+TP  F NG   + AG N GSCK+ +  K+  LT DE LTCFGEH+++VLED NGNSH NIR FMK+G++G+SF DG +L
Sbjct:    3 IQEFKTKLKSNTSEIAFAETMQVIEDNYNFTPTAFTNGEIENKAGENSGSCKLFAFAKLENLTEDETLTCFGEHYKNVLEDENGNSHQNIRNFMKTGFKGLSF-DGEAL 110          
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Match: A0A2K8VM92_9FLAO (Type III effector n=4 Tax=Polaribacter TaxID=52959 RepID=A0A2K8VM92_9FLAO)

HSP 1 Score: 114 bits (285), Expect = 3.220e-27
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  519 IDSLKLKLSEAPESINFEDTMNAIAESYNYTPKRFDNGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNSHGNIRAFMKSGWEGVSF 827
            I   K KL   P SI F DTM  I ++YN+TP  F NG   + AG N GSCK+ +  KI  +T +E L CFGEH+++VLED NG+SH NIR FMKSG+EG+SF
Sbjct:    3 IQEFKTKLKANPTSILFADTMQVIEDNYNFTPTSFTNGDIKNKAGENSGSCKLFAFAKIQKMTKEEALFCFGEHYKNVLEDENGDSHQNIRNFMKSGFEGLSF 105          
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Match: A0A176TCS5_9FLAO (Type III effector n=4 Tax=Polaribacter TaxID=52959 RepID=A0A176TCS5_9FLAO)

HSP 1 Score: 113 bits (283), Expect = 6.230e-27
Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 3
Query:  519 IDSLKLKLSEAPESINFEDTMNAIAESYNYTPKRFDNGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNSHGNIRAFMKSGWEGVSFP-DGLSL 845
            I  L  KL   P SINF DTM  I ++YN+TP  F NG   ++AG N GSCK+ +      LT +E L+CFGEH+++VLED NG+SH NIR FMK+G++G+SF  D L L
Sbjct:    3 IQELITKLKSNPTSINFADTMQVIEDNYNFTPTTFTNGDIKNNAGENSGSCKLFAFAVAQKLTKEEALSCFGEHYKNVLEDENGDSHQNIRNFMKTGFDGLSFEGDALEL 112          
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Match: A0A7L8ABU2_9FLAO (HopJ type III effector protein n=4 Tax=Polaribacter TaxID=52959 RepID=A0A7L8ABU2_9FLAO)

HSP 1 Score: 113 bits (283), Expect = 6.230e-27
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  519 IDSLKLKLSEAPESINFEDTMNAIAESYNYTPKRFDNGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNSHGNIRAFMKSGWEGVSFPDGLSLTPK 854
            I   K  L   P +I F DTM  I E YN+TP  F NG   ++AG N GSCK+ +  K+  LT +E L CFGEH++SVLED NG+SH NIR FMK+G+EG+SF +G +L  K
Sbjct:    3 IQQFKTILKSNPTAITFSDTMQVIEEFYNFTPTTFTNGEIKNNAGKNSGSCKLFAFAKLQKLTKEETLFCFGEHYKSVLEDENGDSHQNIRNFMKTGFEGLSF-EGEALELK 113          
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Match: UPI001F0A53D0 (HopJ type III effector protein n=1 Tax=Tenacibaculum sp. K20-16 TaxID=2910675 RepID=UPI001F0A53D0)

HSP 1 Score: 112 bits (281), Expect = 1.210e-26
Identity = 58/112 (51.79%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  519 IDSLKLKLSEAPESINFEDTMNAIAESYNYTPKRFDNGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNSHGNIRAFMKSGWEGVSFPDGLSLTPK 854
            I   K KL   P SINF +TM  I  +Y +TP  F NG   ++AG N GSCK+ +  K+  L  +E L CFGEH++SVLED NG+SH NIR FMKSG+EG+SF +G +L  K
Sbjct:    3 IQEFKTKLKANPTSINFVETMQVIENNYTFTPTAFTNGDIKNNAGENSGSCKLFAFAKLQKLQKEETLFCFGEHYKSVLEDKNGDSHQNIRNFMKSGFEGLSF-NGEALALK 113          
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Match: A0A1Y0N0Q3_9FLAO (Type III effector n=3 Tax=Polaribacter TaxID=52959 RepID=A0A1Y0N0Q3_9FLAO)

HSP 1 Score: 112 bits (281), Expect = 1.240e-26
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 3
Query:  519 IDSLKLKLSEAPESINFEDTMNAIAESYNYTPKRFDNGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNSHGNIRAFMKSGWEGVSFPDGLSLTPKA 857
            I   K KL   P SINF DTM  I ++YN+TP  F NG  +++AG N GSCK+ +  +   L  +E L CFGEH+++VLED NG+SH NIR FM SG+EG+SF +G +L  K+
Sbjct:    3 IQEFKTKLKSNPTSINFADTMQVIEDNYNFTPTTFTNGEITNNAGENSGSCKLFAFAQHQKLRKEETLFCFGEHYKNVLEDENGDSHQNIRNFMNSGFEGLSF-EGEALELKS 114          
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Match: A0A2U2J8H4_9FLAO (Type III effector n=1 Tax=Polaribacter aquimarinus TaxID=2100726 RepID=A0A2U2J8H4_9FLAO)

HSP 1 Score: 112 bits (280), Expect = 1.730e-26
Identity = 58/110 (52.73%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  519 IDSLKLKLSEAPESINFEDTMNAIAESYNYTPKRFDNGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNSHGNIRAFMKSGWEGVSFP-DGLSL 845
            I   K KL E P +I F +TM  I + YN+TP  F NG  +++AG N GSCK+ +  K   LT +E L CFGEH+ SVLED  G SH NIR FMK+G+EG+SF  D LSL
Sbjct:    3 IQEFKTKLKENPTAITFAETMQVIEDIYNFTPTAFTNGDVTNNAGENSGSCKLFAFAKRQKLTKEETLFCFGEHYTSVLEDEKGTSHQNIRNFMKTGFEGLSFQSDALSL 112          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig888.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XKA2_HETAK2.560e-3149.61Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A813DTD3_POLGL3.240e-3057.66Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
UPI001C559F946.350e-2851.89HopJ type III effector protein n=1 Tax=Aquimarina ... [more]
UPI001F45A3811.190e-2752.29HopJ type III effector protein n=1 Tax=Polaribacte... [more]
A0A2K8VM92_9FLAO3.220e-2754.37Type III effector n=4 Tax=Polaribacter TaxID=52959... [more]
A0A176TCS5_9FLAO6.230e-2751.82Type III effector n=4 Tax=Polaribacter TaxID=52959... [more]
A0A7L8ABU2_9FLAO6.230e-2751.79HopJ type III effector protein n=4 Tax=Polaribacte... [more]
UPI001F0A53D01.210e-2651.79HopJ type III effector protein n=1 Tax=Tenacibacul... [more]
A0A1Y0N0Q3_9FLAO1.240e-2650.44Type III effector n=3 Tax=Polaribacter TaxID=52959... [more]
A0A2U2J8H4_9FLAO1.730e-2652.73Type III effector n=1 Tax=Polaribacter aquimarinus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig888contigC-tenellus_contig888:3279..4722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123400.KB904782_gene1366
Preferred namehopJ
PFAMsHopJ
Model size1278
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categorychloroplast
Exons2
Evalue5.96e-28
EggNOG OGs2C9B9@1|root,32RP0@2|Bacteria,1MZKM@1224|Proteobacteria,1S8UZ@1236|Gammaproteobacteria
Descriptiontype III effector
Cds size834
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790133.8453546-UTR-C-tenellus_contig888:3278..33041680790133.8453546-UTR-C-tenellus_contig888:3278..3304Choristocarpus tenellus KU2346UTRC-tenellus_contig888 3279..3304 +
1680790133.8772197-UTR-C-tenellus_contig888:4304..47221680790133.8772197-UTR-C-tenellus_contig888:4304..4722Choristocarpus tenellus KU2346UTRC-tenellus_contig888 4305..4722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790133.8563159-CDS-C-tenellus_contig888:3304..38971680790133.8563159-CDS-C-tenellus_contig888:3304..3897Choristocarpus tenellus KU2346CDSC-tenellus_contig888 3305..3897 +
1680790133.8658156-CDS-C-tenellus_contig888:4063..43041680790133.8658156-CDS-C-tenellus_contig888:4063..4304Choristocarpus tenellus KU2346CDSC-tenellus_contig888 4064..4304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig888.3.1prot_C-tenellus_contig888.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig888 3305..4304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig888.3.1

>prot_C-tenellus_contig888.3.1 ID=prot_C-tenellus_contig888.3.1|Name=mRNA_C-tenellus_contig888.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=278bp
MKTSMFMFSAAALAFSASEVMAFLLPSSLVAGTTSLTAVTSSTRVITTHN
AACTCLTCRQSIHSRSCTCSACSSMVLSAKDHDASFRFGACSVRMQASHG
DWRECGECVGRPSLHANNCACPACIPRMNIKSCTCAACVGGRWTCLTVMG
MDPSSGAESTSPPSIDSLKLKLSEAPESINFEDTMNAIAESYNYTPKRFD
NGVASSDAGVNEGSCKVLSMGKIAGLTTDEVLTCFGEHFRSVLEDPNGNS
HGNIRAFMKSGWEGVSFPDGLSLTPKA*
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mRNA from alignment at C-tenellus_contig888:3279..4722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig888.3.1 ID=mRNA_C-tenellus_contig888.3.1|Name=mRNA_C-tenellus_contig888.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1444bp|location=Sequence derived from alignment at C-tenellus_contig888:3279..4722+ (Choristocarpus tenellus KU2346)
CACAGGAGAGCCACAAAGCACCTACCATGAAGACTTCCATGTTCATGTTT AGCGCAGCTGCTCTGGCCTTCAGCGCTAGCGAGGTGATGGCCTTCCTTCT CCCGAGTAGTCTGGTTGCGGGAACTACCTCCCTCACTGCTGTAACCTCTT CAACTCGCGTCATTACCACACACAATGCAGCATGCACTTGCCTCACATGC AGGCAGAGTATCCACAGTAGATCGTGCACCTGTTCTGCATGCTCATCTAT GGTTCTCTCCGCTAAGGATCATGATGCGAGCTTCCGCTTTGGTGCCTGCT CTGTGCGCATGCAAGCTTCCCATGGTGACTGGCGTGAATGTGGAGAATGC GTTGGGAGGCCCAGTCTCCACGCAAACAATTGCGCATGCCCTGCTTGCAT CCCCCGCATGAATATCAAATCCTGCACCTGTGCAGCCTGCGTAGGTGGAC GTTGGACCTGTCTGACTGTTATGGGCATGGACCCCTCTTCTGGGGCGGAG AGCACGTCACCTCCCTCAATCGATTCGCTCAAGTTGAAGCTCTCGGAGGC TCCAGAGTCCATCAACTTCGAGGACACCATGAATGCCATTGCGGAGTCCT ACAATTACACCCCCAAGCGGTGAGTAACCTAGTTAGATTGTGCATTTTAA TGAACACTGGAATTATTTACTGCTCTGTCCCAACAATGATTTATCATGGA GTCTGCTGAGGAGACCCTGAAGCTCTTCTAACCAAACCTGCTCCCAACTG CAGCAACTGACTGTGCCAATGTCTGGCGCGTCCAGGTTCGATAATGGTGT CGCGTCGAGTGATGCAGGTGTCAACGAGGGAAGCTGTAAGGTGCTGTCGA TGGGCAAAATTGCAGGGTTGACTACGGATGAAGTATTGACTTGCTTTGGT GAGCACTTTAGGTCCGTGTTGGAGGACCCGAATGGTAACAGTCATGGCAA CATCCGTGCTTTCATGAAAAGCGGGTGGGAAGGAGTCAGCTTTCCAGATG GCCTTTCCCTGACCCCCAAAGCGTGAGGGCCAATGAGAAGCAGGAAATTC GAGGTAGAAATGTCGTACGGAACATAGCACGTTAAATACTCCTTCGTATT TTCAACATAAATGTATTGCTTTTTTACTCGTGCTAAACTTGCCTTCAAAT GCGTTGAGCGGCATGGCAAGGTCATGTGGGTAGACCAGTTGAGCACTGGC GTAGTGGAAAACTTTGAATGCTCATAATTGCACAATAGAACGAATAGATT TCTAGACTCGTTACTCAGTGGTAGTTATGCCTGGAAGAGTAAGGGCAGCC TTAATTTAATGAAGAACCTACAATATGTGGGTGATACTGTCTGGGAGATG TTGGGGATGTTCCTCTTGTGCTCATCTTGTCAACGTGATTCAGAACCTAC AGTCCACCAAGCGTTCTATAACTCAAAATATTAATCTTCTCAGC
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Coding sequence (CDS) from alignment at C-tenellus_contig888:3279..4722+

>mRNA_C-tenellus_contig888.3.1 ID=mRNA_C-tenellus_contig888.3.1|Name=mRNA_C-tenellus_contig888.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=834bp|location=Sequence derived from alignment at C-tenellus_contig888:3279..4722+ (Choristocarpus tenellus KU2346)
ATGAAGACTTCCATGTTCATGTTTAGCGCAGCTGCTCTGGCCTTCAGCGC
TAGCGAGGTGATGGCCTTCCTTCTCCCGAGTAGTCTGGTTGCGGGAACTA
CCTCCCTCACTGCTGTAACCTCTTCAACTCGCGTCATTACCACACACAAT
GCAGCATGCACTTGCCTCACATGCAGGCAGAGTATCCACAGTAGATCGTG
CACCTGTTCTGCATGCTCATCTATGGTTCTCTCCGCTAAGGATCATGATG
CGAGCTTCCGCTTTGGTGCCTGCTCTGTGCGCATGCAAGCTTCCCATGGT
GACTGGCGTGAATGTGGAGAATGCGTTGGGAGGCCCAGTCTCCACGCAAA
CAATTGCGCATGCCCTGCTTGCATCCCCCGCATGAATATCAAATCCTGCA
CCTGTGCAGCCTGCGTAGGTGGACGTTGGACCTGTCTGACTGTTATGGGC
ATGGACCCCTCTTCTGGGGCGGAGAGCACGTCACCTCCCTCAATCGATTC
GCTCAAGTTGAAGCTCTCGGAGGCTCCAGAGTCCATCAACTTCGAGGACA
CCATGAATGCCATTGCGGAGTCCTACAATTACACCCCCAAGCGGTTCGAT
AATGGTGTCGCGTCGAGTGATGCAGGTGTCAACGAGGGAAGCTGTAAGGT
GCTGTCGATGGGCAAAATTGCAGGGTTGACTACGGATGAAGTATTGACTT
GCTTTGGTGAGCACTTTAGGTCCGTGTTGGAGGACCCGAATGGTAACAGT
CATGGCAACATCCGTGCTTTCATGAAAAGCGGGTGGGAAGGAGTCAGCTT
TCCAGATGGCCTTTCCCTGACCCCCAAAGCGTGA
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