mRNA_C-tenellus_contig8798.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8798.1.2
Unique NamemRNA_C-tenellus_contig8798.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Match: D7FK62_ECTSI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK62_ECTSI)

HSP 1 Score: 332 bits (850), Expect = 5.550e-110
Identity = 169/259 (65.25%), Postives = 202/259 (77.99%), Query Frame = 1
Query:  133 ASGPPEGPALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALERLHRTMLLDPEGLQVLRARPVINEATLDLPGLAALPKGSLGRSYSDFMGKYGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALKWFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRHGSREVLNGTYLPWALRTGRRARS-LICVWYERRWEMTVDEVRRELRVDPAPER 906
            ASGP     LYS H PT+PLQR  +AG+A ++AL D +RADMVA LGEVTGR+ALE+L+R+ML DPEG ++LRARPVINEAT+DL  LAALP G+LG+SYS+FM +  FSPD RS V++VDDPDLAYVM+RYREVHDLWH L+GLP TVE ELALKWFELVQTGLPVCALSAV GPLALP  EP   +         S    + R GSREVL  T++PWA+R GRRAR  L+CVWYE+RWE  ++ VRR+L V+ AP+R
Sbjct:   81 ASGPAAKRVLYSGHQPTSPLQRTAMAGWATVTALMDPERADMVATLGEVTGRLALEQLYRSMLADPEGREILRARPVINEATVDLAALAALPDGTLGKSYSNFMKENNFSPDGRSPVKYVDDPDLAYVMRRYREVHDLWHALTGLPATVEGELALKWFELVQTGLPVCALSAVLGPLALPSKEPPAPTTTPSXX--XSSGSGRKRRGSREVLARTFVPWAIRAGRRARRPLVCVWYEKRWEQPLELVRRDLGVEMAPQR 337          
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Match: A0A835Z0M6_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0M6_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.040e-78
Identity = 127/258 (49.22%), Postives = 167/258 (64.73%), Query Frame = 1
Query:  130 SASGPPEGPALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALERLHRTMLLDPEGLQVLRARPVINEATLDLPGLAALPKGSLGRSYSDFMGKYGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALKWFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRHGSREVLNGTYLPWALRTGRRARSLICVWYERRWEMTVDEVRRELRVDPAPE 903
            SA+G P    LY  H P +P QR+ +   +A SA  D +RADMVAALGE TG  AL+++H  ML DP+G+++LR RP ++E ++DL  L  LP G+ G++Y+DFM    F+PDSR  VRFVDD DLAYVM RYR+VHDLWHVLSGLPP++E E+ALKWFE+VQTGLPV A+SA+ G   +PR                           R  L    +PWA+R GRR+  L+ VWYER W+M +   R +L+ +PAP+
Sbjct:   13 SAAGEPCKRILYKGHNPISPSQRVGLTFISAFSAFADPERADMVAALGETTGHRALKQMHHRMLQDPDGIELLRERPQLDEHSVDLEALGQLPSGTFGKAYADFMAHNQFTPDSRLPVRFVDDADLAYVMARYRQVHDLWHVLSGLPPSLEGEIALKWFEMVQTGLPVAAISALVGAARVPRE-------------------------GRAALRQKLVPWAIRAGRRSVPLMNVWYERYWDMYLSNFREKLKFEPAPQ 245          
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Match: W7U2W9_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2W9_9STRA)

HSP 1 Score: 238 bits (607), Expect = 9.780e-74
Identity = 125/252 (49.60%), Postives = 163/252 (64.68%), Query Frame = 1
Query:  145 PEGPALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALERLHRTMLLDPEGLQVLRARPVINEATLDLPGLAALPKGSLGRSYSDFMGKYGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALKWFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRHGSREVLNGTYLPWALRTGRRARSLICVWYERRWEMTVDEVRRELRVDPAP 900
            PE P LYSSH PT+  Q+L +AG++A +A RD +R DMVAALGE TG  AL+RL R M  DP G ++L A+P I E +     L  LP+G+ GR Y+ F+  +G+SPD R+ VRFVDD +LA+VMQRYR+VHD WHVL GLPPTV  ELALKWFE+VQT LP+ A S V GPL+L   E                         R++L   Y+PWA+R   +AR L+CVWYER +E  ++ +R+ L++  AP
Sbjct:   80 PETP-LYSSHIPTSGFQKLYIAGFSAATAFRDPERGDMVAALGETTGTRALQRLRRAMSADPVGRELLAAKPDIKEDSTRPDRLRRLPEGTFGREYARFLDHHGYSPDERAAVRFVDDAELAFVMQRYRQVHDFWHVLCGLPPTVLGELALKWFEMVQTRLPIAAFSGVVGPLSLSAQE-------------------------RKLLKEQYIPWAVRAAVKARPLMCVWYERSFEEPLELMRKRLQIVTAP 305          
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Match: A0A067BMW8_SAPPC (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BMW8_SAPPC)

HSP 1 Score: 232 bits (592), Expect = 3.520e-72
Identity = 122/259 (47.10%), Postives = 162/259 (62.55%), Query Frame = 1
Query:  130 SASGPPEGPALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALERLHRTMLLDPEGLQVLRARPVINEATLDLPGLAALPKGSLGRSYSDFMGKYGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALKWFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRHGSREVLNGTYLPWALRTGRRARSLICVWYERRWEMTVDEVRRELRVDPAPER 906
            SA+GPP    L++ H PTTP Q+L VA  AA+S   + +R DM+AALG+ TG +AL ++H  M  DP G+++L  +P I  +  D+  L +LP  S G +Y+ FM  +GF  D R+ VRFVDD +LAYV+QRYRE+HD WHVL GLPPTV +E+ALK+ ELVQTGLPVCALS   GPL L   E +E                         L GT++PWA R GR A  L+ V+YER +E  ++++RR L +  AP R
Sbjct:   21 SAAGPPTRHVLHAHHVPTTPTQKLLVAATAAVSVFANPERGDMLAALGDATGEVALRQMHLKMCSDPVGMEILAQKPRIRSSVTDIDALRSLPTDSFGYAYTQFMDAHGFEADGRAHVRFVDDAELAYVLQRYRELHDFWHVLFGLPPTVFSEIALKYVELVQTGLPVCALSGFVGPLRLSCDERKE-------------------------LLGTFVPWAYRAGREAPCLLNVYYEREYETKLEDLRRRLNIRVAPAR 254          
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Match: A0A1V9YRS5_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YRS5_9STRA)

HSP 1 Score: 231 bits (589), Expect = 9.660e-72
Identity = 122/257 (47.47%), Postives = 163/257 (63.42%), Query Frame = 1
Query:  130 SASGPPEGPALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALERLHRTMLLDPEGLQVLRARPVINEATLDLPGLAALPKGSLGRSYSDFMGKYGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALKWFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRHGSREVLNGTYLPWALRTGRRARSLICVWYERRWEMTVDEVRRELRVDPAP 900
            SA+GPP    L++ H PTTPLQ++ VA  AA+S + + +R DM+AALG+ TG +AL ++H  M  DP G+++L  +P I     D+  L +LPK S G +Y+ FM  +GF  D R+ VRFVDDP+LAYV+QRYRE+HD WHVL GLPPTV  ELALK+ ELVQTGLPV ALS + GPL L   E +E                         L  TYLPWA + G++A  L+ V+YER +E  ++++R  LR+  AP
Sbjct:   22 SAAGPPTQHLLHAHHVPTTPLQKILVAATAAVSVMANPERGDMLAALGDATGEVALRQMHLKMCSDPTGMEILAQKPRIRSTVTDVDALRSLPKDSFGYAYTQFMDAHGFEADGRAHVRFVDDPELAYVLQRYRELHDFWHVLFGLPPTVFGELALKYVELVQTGLPVAALSGIVGPLRLSCDERKE-------------------------LFTTYLPWAHQAGKQAPFLMNVYYEREYESNLEDLRARLRILVAP 253          
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Match: A0A6A4ZPM3_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZPM3_9STRA)

HSP 1 Score: 226 bits (577), Expect = 7.790e-70
Identity = 120/269 (44.61%), Postives = 164/269 (60.97%), Query Frame = 1
Query:  115 LAQVSSASGPPEGPALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALERLHRTMLLDPEGLQVLRARPVINEATLDLPGLAALPKGSLGRSYSDFMGKYGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALKWFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRHGSREVLNGTYLPWALRTGRRARSLICVWYERRWEMTVDEVRRELRVDPAPERPSCAR 921
            L+   SA+G P    LY SH PT+PLQ++ VA  +A+S   + +R DM+AALG+VTG +AL ++H  M  DP G+Q+L  +P      +D+  L  LP+ + G +Y+ FM  +GF  D R+ V+FVDDP+LAYVMQRYRE+HD WHVL GLPPT  +E+ALK+ ELVQTGLPVC LS   GPL L  HE R+                         L  T++PWA R G +A  L+ V+YER +   +D++R  LR+   P  P+ A+
Sbjct:   20 LSTALSAAGEPTKHVLYKSHMPTSPLQKIVVAVGSAVSVFTNPERGDMLAALGDVTGAVALRKMHLKMSSDPVGMQILAEKPRFRSNVVDIDALRDLPRNTFGYAYTQFMDAHGFEADGRADVKFVDDPELAYVMQRYRELHDFWHVLFGLPPTEFSEIALKYVELVQTGLPVCTLSGFVGPLRLSSHERRQ-------------------------LLCTFIPWAYRAGHQAPFLMNVFYEREFNTPLDDLRARLRILLPPSPPAIAK 263          
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Match: A0A151MFC8_ALLMI (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=4 Tax=Crocodylia TaxID=1294634 RepID=A0A151MFC8_ALLMI)

HSP 1 Score: 225 bits (574), Expect = 1.170e-69
Identity = 119/252 (47.22%), Postives = 157/252 (62.30%), Query Frame = 1
Query:  145 PEGPALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALERLHRTMLLDPEGLQVLRARPVINEATLDLPGLAALPKGSLGRSYSDFMGKYGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALKWFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRHGSREVLNGTYLPWALRTGRRARSLICVWYERRWEMTVDEVRRELRVDPAP 900
            P+GP LY  H PT+PLQ++ +A  +AL+ALRD  R DMVA LGE TG +AL+RL   M  D EG Q+LR RP I  +TLD+ GL  LP G+ GR Y  F+     SPD+R   +FVDD +LAYV+QRYREVHDL H L G+P  +  E+ +KWFE VQTGLP+CAL AVFGP+ L   +                          +VL    +PWA+++G RA  ++ ++YERRWE TV+ +R E+ + P P
Sbjct:    5 PQGP-LYPGHVPTSPLQKVLLAAGSALAALRDPYRHDMVAVLGETTGSLALQRLRDKMRHDAEGYQILRERPRIRLSTLDVAGLRGLPDGTFGREYMRFLEDNRVSPDTRMPAKFVDDEELAYVIQRYREVHDLMHTLLGMPTNMLGEVVVKWFEAVQTGLPMCALGAVFGPIRLKARKL-------------------------QVLTTELIPWAVQSGLRANCILNIYYERRWEQTVESLREEIGILPPP 230          
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Match: A0A7S0ARY6_9STRA (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0ARY6_9STRA)

HSP 1 Score: 225 bits (573), Expect = 6.780e-69
Identity = 121/267 (45.32%), Postives = 166/267 (62.17%), Query Frame = 1
Query:  103 GSRGLAQVSSASGPPEGPALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALERLHRTMLLDPEGLQVLRARPVINEATLDLPGLA-ALPKGSLGRSYSDFMGKYGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALKWFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRHGSREVLNGTYLPWALRTGRRARSLICVWYERRWEMTVDEVRRELRVDPAP 900
            GS G    SS+S P   PAL++S    TPL+R+ VA ++A +AL D  RAD VAALGEVTG +AL+ +HR M  DP G ++L+ RP+++ A++D+  L+  LP  + G  Y+ FM  +GF PD R+ ++F+ DP+LAY+M RYR+ HD WH L+GLPPTV  ELALKW E++QTGLPV ALSA  G L L   E                         R +LN  YLPWA+R GR +  L+ V+YE  +E  ++E+R  LR++  P
Sbjct:   47 GSSGSDDSSSSSQPHLSPALFASG--LTPLERVGVAIHSATTALADPTRADAVAALGEVTGHVALQSIHRRMHSDPTGKRILQDRPLVDNASIDIEHLSQTLPLNTFGHQYASFMMGHGFDPDGRAAIKFIADPELAYIMLRYRQCHDFWHTLTGLPPTVLGELALKWLEVIQTGLPVAALSATVGSLRLSAEE-------------------------RRILNEVYLPWAVRVGRNSEYLLNVYYEEEFESDIEELRARLRIEKVP 286          
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Match: UPI00148DC878 (ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=3 Tax=Pleuronectoidei TaxID=30942 RepID=UPI00148DC878)

HSP 1 Score: 224 bits (571), Expect = 9.370e-69
Identity = 128/271 (47.23%), Postives = 168/271 (61.99%), Query Frame = 1
Query:  115 LAQVSSASGPPEG--PALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALERLHRTMLLDPEGLQVLRARPVINEATLDLPGLAALPKGSLGRSYSDFMGKYGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALKWFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRHGSREVLNGTYLPWALRTGRRARSLICVWYERRWEMTVDEVRRELRVDPAPERPSCAR 921
            L   SS+SG  +G    LY+ H PTTP+Q+  +A  + ++AL+D  R DMVA LGE TG +AL  L   M  DPEG  +L  RP I  +TLDL  +A+LP+GS GR Y  F+     +PDSR+ VRFVD+ +LAYVMQRYREVHDL H L G+P  +  E+A+KWFE  QTGLP+CAL AV GPL L                      S SR    + L  +  PWAL+ GRRAR ++ V+YERRWE  ++++R+EL +DP P  PS ++
Sbjct:   28 LCSSSSSSGFTDGCFDGLYTGHIPTTPIQKALLAVGSGVAALQDPYRHDMVAVLGETTGHLALLNLRDRMRNDPEGHTILTERPRIRLSTLDLTTMASLPEGSFGREYLRFLEDNHVTPDSRADVRFVDNEELAYVMQRYREVHDLLHTLLGMPTNMLGEVAVKWFEAAQTGLPMCALGAVLGPLRL----------------------STSRL---QTLFTSLGPWALQNGRRARCVLSVFYERRWEQNLEDLRQELNIDPPPVIPSASK 273          
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Match: W5LXV6_LEPOC (Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial n=5 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5LXV6_LEPOC)

HSP 1 Score: 222 bits (566), Expect = 1.130e-68
Identity = 118/249 (47.39%), Postives = 154/249 (61.85%), Query Frame = 1
Query:  154 PALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALERLHRTMLLDPEGLQVLRARPVINEATLDLPGLAALPKGSLGRSYSDFMGKYGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALKWFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRHGSREVLNGTYLPWALRTGRRARSLICVWYERRWEMTVDEVRRELRVDPAP 900
            P LY SH PT PLQ+  +A  + ++ALRD  R DMVA LGE TG++AL RL   M  DPEG  +L+ RP I  +TLD   L +LP+GSLGR Y  F+ +   +PDSR++V+FVDD +LAYVM RYREVHDL H L G+P  +  E+A+KWFE  QTGLP+C L A  GPL L                              ++L GT  PWALR+GR AR ++ V+YE+RW  ++ E+R EL ++P P
Sbjct:    5 PHLYQSHIPTNPLQKALLAVGSGIAALRDPYRHDMVAVLGETTGQLALRRLRDEMRRDPEGCSILQERPRIRLSTLDPCALGSLPEGSLGREYLRFLQRNKVTPDSRAEVKFVDDEELAYVMLRYREVHDLMHTLLGMPTNMLGEVAVKWFEAAQTGLPMCILGAALGPLRLSARRL-------------------------QLLAGTLAPWALRSGRGARCVLTVFYEQRWAQSLAELREELGIEPPP 228          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8798.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK62_ECTSI5.550e-11065.25Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A835Z0M6_9STRA1.040e-7849.22Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
W7U2W9_9STRA9.780e-7449.60Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A067BMW8_SAPPC3.520e-7247.10Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A1V9YRS5_9STRA9.660e-7247.47Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A6A4ZPM3_9STRA7.790e-7044.61Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A151MFC8_ALLMI1.170e-6947.22Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
A0A7S0ARY6_9STRA6.780e-6945.32Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
UPI00148DC8789.370e-6947.23ubiquinone biosynthesis protein COQ4 homolog, mito... [more]
W5LXV6_LEPOC1.130e-6847.39Ubiquinone biosynthesis protein COQ4 homolog, mito... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8798contigC-tenellus_contig8798:221..3194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FK62
Preferred nameCOQ4
PFAMsCoq4
Model size928
Max annot lvl2759|Eukaryota
KEGG koko:K18586
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016020,GO:0019866,GO:0019898,GO:0031090,GO:0031312,GO:0031314,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051186,GO:0051188,GO:0071704,GO:1901576,GO:1901661,GO:1901663
Exons5
Evalue9.1e-111
EggNOG OGsCOG5031@1|root,KOG3244@2759|Eukaryota
Ec32 ortholog descriptionUbiquinone biosynthesis protein Coq4
Ec32 orthologEc-04_005680.1
Descriptionubiquinone biosynthetic process
Cds size927
COG categoryH
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790128.58515-CDS-C-tenellus_contig8798:220..4241680790128.58515-CDS-C-tenellus_contig8798:220..424Choristocarpus tenellus KU2346CDSC-tenellus_contig8798 221..424 -
1680790128.5999687-CDS-C-tenellus_contig8798:472..6711680790128.5999687-CDS-C-tenellus_contig8798:472..671Choristocarpus tenellus KU2346CDSC-tenellus_contig8798 473..671 -
1680790128.6105146-CDS-C-tenellus_contig8798:1290..14151680790128.6105146-CDS-C-tenellus_contig8798:1290..1415Choristocarpus tenellus KU2346CDSC-tenellus_contig8798 1291..1415 -
1680790128.6194048-CDS-C-tenellus_contig8798:2443..25311680790128.6194048-CDS-C-tenellus_contig8798:2443..2531Choristocarpus tenellus KU2346CDSC-tenellus_contig8798 2444..2531 -
1680790128.6317906-CDS-C-tenellus_contig8798:2883..31941680790128.6317906-CDS-C-tenellus_contig8798:2883..3194Choristocarpus tenellus KU2346CDSC-tenellus_contig8798 2884..3194 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8798.1.2prot_C-tenellus_contig8798.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8798 221..3194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8798.1.2

>prot_C-tenellus_contig8798.1.2 ID=prot_C-tenellus_contig8798.1.2|Name=mRNA_C-tenellus_contig8798.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=309bp
VALSCSTLFVNGRDRASCLLFSSVRSCSKHCHLPGSRGLAQVSSASGPPE
GPALYSSHAPTTPLQRLTVAGYAALSALRDSKRADMVAALGEVTGRMALE
RLHRTMLLDPEGLQVLRARPVINEATLDLPGLAALPKGSLGRSYSDFMGK
YGFSPDSRSQVRFVDDPDLAYVMQRYREVHDLWHVLSGLPPTVEAELALK
WFELVQTGLPVCALSAVFGPLALPRHEPRENSGVMKHWGKDSKDESKSRH
GSREVLNGTYLPWALRTGRRARSLICVWYERRWEMTVDEVRRELRVDPAP
ERPSCARG*
back to top

mRNA from alignment at C-tenellus_contig8798:221..3194-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8798.1.2 ID=mRNA_C-tenellus_contig8798.1.2|Name=mRNA_C-tenellus_contig8798.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2974bp|location=Sequence derived from alignment at C-tenellus_contig8798:221..3194- (Choristocarpus tenellus KU2346)
GTCGCTTTGTCTTGCTCAACTTTGTTTGTCAATGGCAGAGATAGAGCCAG TTGTCTACTCTTCTCCAGCGTCCGGTCATGCTCGAAGCATTGCCATCTTC CAGGCTCTCGTGGTCTGGCTCAAGTTTCATCTGCCTCGGGGCCACCTGAA GGACCTGCACTTTACTCTTCCCATGCTCCTACGACACCATTGCAGCGCTT GACTGTGGCGGGGTATGCAGCGTTGTCCGCCCTTCGCGACTCCAAACGTG CTGATATGGTGGCGGCTCTGGGGGAGGTAACGGGTCGCATGGCACTTGAG CGGCTGCATCGGTGAGCACCCGACCCCCAATGTACATGTATATGATCACT GATTGGAGAAACGTACTTAAGGGTTGGGGGCCAGCAGAGATGGGGAGGTT CAGTGTTGCACGTACAATTTCAGAAATTGATCGTGCTGAGTGTCGGCACT TGTCATAACACCGTCAATACCTTTGAGATTGTGGGAGAACATCGGTTGCG CCGGTTGGTACCGAGACCTCCGATCCATGGTTGCTTTGGTTCCTACAACT CTCGCCTAAAGTACGAAGATTCTGTTGTTGACATTACCTCTGCTTCTCTG CATGAAGGATTTGATGAGATATGTCACTGATACCCCCACTCTTGTTGGGG TTGACTATGGCAGGACTATGCTTCTAGATCCAGAAGGTCTTCAGGTGCTG CGAGCCCGTCCCGTCATCAACGAGGCAACATTGGACCTACCCGGCCTTGC GGTGAGGCTTCAAGCATGTACCATGGAGGGTAGGTGGATATAATTGAGTC CCTCGTAATAGTAGCTCGTTAATTGGTGGTAACTGTACGCAACGAAATTC TGTCTATAGGGGTTTCTTCAGTTTGGGTGGTGGGAACACCTTGCACGCAT TATCGTCAGGTATGAATAGTTTAAGGCTTACCCATGGTCTCGTCCAAAGA GTAATGAAGCCTAATGGCTGTGCACACACCGGTTTAAAATACTTGTTGGG ACTATTCCATATTGAGAAGCAAGTATCCTGGCAAGGGTGTGGACTTCCTG GATTGTACCTGTACACAAAGTTGTGTTTCATTCCATTTTTTTTCTGATTG ACTTTTGATTGGGGAATGAATGTGAAAGGAGGGTCAATGGAGCTGATCTG ATTGTAGTGCACCTTTCCCAGCAAGAGTAGTCGAGAGAGAGGAGAGGCAA CAAAGATGCTCTGTGATTTTCTGGTGGATTAGGCTTGGAACCTTCCAAGG AAACACAACATGGCAAGACCTCCCGTAAGTCTTGGACATCGCAGATTGAG CTCCAATTGTATGGAACGTACCTACAATGACAAGTGCCAAAATACTCTAG AGCTCTGCATGCTTATAGTTGTACTCGTGTTGGGATGCGTTTCTTGTATT TTGTTAGAGGTCAAATCTCTGAAGGTGCTGAAAAAGCTCATGAGAGGCAT CTCTCTTAGAGGAGCAGGTGTTTGCACAAGTCCAGGTAAATCCATTGTTT TTCATAAGCAATCCCATACAAACACATACATGTAAGCATGCTTAGTATAT ACTCGAGCATACTAGACATATGATTAGTAGTTGTCGTGCCAAGTTCATAC TGCATACCGAAGGGATAAGCAATCCAAGGTTGTATTTGTAATTCTCTCAT AGTTCCATCTTTGTTGTCCTTCCCCCCTTCACCAGTAAAATGTTTAACTA GTAGTTGTTGGATGAATTTTTCAGCATCAAGTCACCATGACCCATTTTAT CCCCTCTTAACCTCTCCTGCTATCTGAAGGCACTCCCGAAAGGTTCGCTG GGTAGATCATACTCAGATTTTATGGGCAAGTACGGTTTCTCACCGGACAG TCGGAGTCAAGTGCGTTTTGTGGATGACCCTGATCTTGCTTATGTGATGC AGAGGTGAGGTGTTTGTTGTCGTGAGAGACAGGGCACCTATATGGCAAAG AGTCACTCCTCCTAACCCACTTGGTGCATGCTCAACCCCCTGATTACACA TTGATTTGTATCCCCTTGATCTTATTGGAGATATCTTTTGTTGATCATGT TTGCGTTACCTGACTTACCTCCTTATACCTGTCTCAGTAGAACTGGTTTG TCGTTTTGCTTACGAAAGCACCTTGCTCTACCAGACTGTATGTTTGGAGG AATGGTGCAAATGTAATTTTCTGTTTGACAATAGGATTTAAGCTAAAATA ACTTCTTAGTATTTGGTTACCTAGATGACTGGATGCCAGGTGTACTATGC AAAGTACAGATGTCTCGCCACCCTTTGAATATTTTTTGGTGCACATGTAT CCGAGAGGTCTCTCTGACTCTGCTTGCTCCAGAAGATTCTGGTGAACTCT GTTTCATCTCATGTATGATACCTCCAACACCTTTCTAGCACCGAGGTAGG AGTAGACATTGCTTGACTCTCTATGCTTCCTTTTCCCTATCCCACTCTAC TGCTATTGTCTTGCCTCACCCACTACATACATGTTCTATATATTTTATTT TTGTTAATACATGCTTGTGTCAGGTATCGCGAGGTGCATGATCTGTGGCA CGTTCTAAGTGGACTGCCTCCAACAGTTGAGGCAGAGCTGGCGCTGAAGT GGTTCGAACTTGTCCAGACTGGTCTCCCTGTCTGTGCTCTCAGTGCAGTT TTTGGCCCCCTTGCCCTCCCTCGCCATGAGCCACGAGAAAATTCTGGGGT CATGAAACATTGGGGAAAAGATGTACAAGAGGGGTCATCGGCAGGGGGAA GAAATGGACCAGGGGGTGAGAGCAAGGATGAGTCTAAGAGCCGACATGGT AGTCGAGAAGTCCTCAATGGGACTTATTTGCCTTGGGCTCTTAGGACTGG GAGGCGTGCCAGGTCGTTGATTTGTGTTTGGTATGAGCGGCGTTGGGAGA TGACGGTGGATGAGGTGCGAAGGGAGCTTCGTGTAGATCCTGCACCTGAA CGACCAAGTTGTGCAAGAGGATAA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8798:221..3194-

>mRNA_C-tenellus_contig8798.1.2 ID=mRNA_C-tenellus_contig8798.1.2|Name=mRNA_C-tenellus_contig8798.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=927bp|location=Sequence derived from alignment at C-tenellus_contig8798:221..3194- (Choristocarpus tenellus KU2346)
GTCGCTTTGTCTTGCTCAACTTTGTTTGTCAATGGCAGAGATAGAGCCAG
TTGTCTACTCTTCTCCAGCGTCCGGTCATGCTCGAAGCATTGCCATCTTC
CAGGCTCTCGTGGTCTGGCTCAAGTTTCATCTGCCTCGGGGCCACCTGAA
GGACCTGCACTTTACTCTTCCCATGCTCCTACGACACCATTGCAGCGCTT
GACTGTGGCGGGGTATGCAGCGTTGTCCGCCCTTCGCGACTCCAAACGTG
CTGATATGGTGGCGGCTCTGGGGGAGGTAACGGGTCGCATGGCACTTGAG
CGGCTGCATCGGACTATGCTTCTAGATCCAGAAGGTCTTCAGGTGCTGCG
AGCCCGTCCCGTCATCAACGAGGCAACATTGGACCTACCCGGCCTTGCGG
CACTCCCGAAAGGTTCGCTGGGTAGATCATACTCAGATTTTATGGGCAAG
TACGGTTTCTCACCGGACAGTCGGAGTCAAGTGCGTTTTGTGGATGACCC
TGATCTTGCTTATGTGATGCAGAGGTATCGCGAGGTGCATGATCTGTGGC
ACGTTCTAAGTGGACTGCCTCCAACAGTTGAGGCAGAGCTGGCGCTGAAG
TGGTTCGAACTTGTCCAGACTGGTCTCCCTGTCTGTGCTCTCAGTGCAGT
TTTTGGCCCCCTTGCCCTCCCTCGCCATGAGCCACGAGAAAATTCTGGGG
TCATGAAACATTGGGGAAAAGATAGCAAGGATGAGTCTAAGAGCCGACAT
GGTAGTCGAGAAGTCCTCAATGGGACTTATTTGCCTTGGGCTCTTAGGAC
TGGGAGGCGTGCCAGGTCGTTGATTTGTGTTTGGTATGAGCGGCGTTGGG
AGATGACGGTGGATGAGGTGCGAAGGGAGCTTCGTGTAGATCCTGCACCT
GAACGACCAAGTTGTGCAAGAGGATAA
back to top