mRNA_C-tenellus_contig879.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Match: A0A6H5JZT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZT1_9PHAE) HSP 1 Score: 271 bits (694), Expect = 3.200e-84 Identity = 142/253 (56.13%), Postives = 184/253 (72.73%), Query Frame = 2 Query: 284 SVLLV-ATFGASVLPFLSAGPETGSAS-KTVRVVQEDGTEIIKGSLTAMSRAEIQKKLSQLPVFFLRESNGAVHLKNGEGLFFMSPEDAKAKLAALTNSENIRVAATTLDDVFFPLVLKKGANAKPVGAETSGISDTSAKYHLVARSEQLEKASKLQETLVEIQKDDVPVWIADTLAFQGVG-RIKIPLFTNYSDLETSWERLKASGSKSAAAPRVQVTTIAEVVRKMEKGGGDNRMLEFFADMEAIDQAEKL 1033 +VL+V +T G S +PFLS GP+ S KTVRVV EDG +G LTAM+R EIQKKLSQ+PVFFLR+ +GAVH++NGEGLFFMSP DAK KL L +E +VAATTLDD+++PL+ KKG N KPV A SG+SD S +Y ++ RS Q+ +A + Q VPVW A+TLAF+G G ++K+PLFTN DL TSW+RL+ G A +P +QV++I ++ M++GGGD R LEFFADM+AI+QAEKL Sbjct: 78 TVLIVGSTIGVSAIPFLSLGPQQQSKGPKTVRVVDEDGNTSERGILTAMTRPEIQKKLSQIPVFFLRDESGAVHVENGEGLFFMSPGDAKEKLQDLKGAEGTKVAATTLDDIWYPLIKKKGLNKKPVAAGASGLSDLSCRYRIIPRSNQVAQALETQGWNAVADAGGVPVWAAETLAFRGAGNKMKLPLFTNVDDLMTSWDRLETEGGSEAKSPTIQVSSIGAIIDMMQRGGGDQRNLEFFADMDAIEQAEKL 330
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Match: D7G9I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I2_ECTSI) HSP 1 Score: 220 bits (561), Expect = 3.010e-59 Identity = 122/258 (47.29%), Postives = 166/258 (64.34%), Query Frame = 2 Query: 284 SVLLV-ATFGASVLPFLSAGPETGS------ASKTVRVVQEDGTEIIKGSLTAMSRAEIQKKLSQLPVFFLRESNGAVHLKNGEGLFFMSPEDAKAKLAALTNSENIRVAATTLDDVFFPLVLKKGANAKPVGAETSGISDTSAKYHLVARSEQLEKASKLQETLVEIQKDDVPVWIADTLAFQGVG-RIKIPLFTNYSDLETSWERLKASGSKSAAAPRVQVTTIAEVVRKMEKGGGDNRMLEFFADMEAIDQAEKL 1033 +VL+V +T G S +PFLS GP+ + ++KTV + +E +PVFFLR+ +GAVH++NGEGLFFMSP DAK KL L +E +VAATTLDDV++PL+ KKG N V A SG+SD SA+Y ++ RS Q+ +A + Q VPVW A+TLAF+G G ++K+PLFTN DL TSW+RL+ G A +P +QV++I ++ M++GGGD R LEFFADM+AI+QAEKL Sbjct: 843 TVLIVGSTIGVSAIPFLSLGPQQQALRLYALSTKTVTLPKE------------------------IPVFFLRDESGAVHVENGEGLFFMSPGDAKEKLQDLKGAEGTKVAATTLDDVWYPLIKKKGLNKNSVAAGASGLSDLSARYRIIPRSNQVAQALETQGWNAVADAGGVPVWAAETLAFRGTGNKMKLPLFTNVDDLMTSWDRLETEGGSEAKSPTIQVSSIGAIIDMMQRGGGDQRNLEFFADMDAIEQAEKL 1076
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Match: A0A835YYZ9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYZ9_9STRA) HSP 1 Score: 163 bits (413), Expect = 7.090e-42 Identity = 132/397 (33.25%), Postives = 188/397 (47.36%), Query Frame = 2 Query: 119 GATAFVAPYIPRRLNLRTGRVIGSRDTTSCRISRASTVVCMAQEEGTSFKNIAVAS------------VLLVATFGASVLPFLSAGPETGSASK----TVRVVQEDGTEIIKGSLTA------------------MSRAEIQKKLSQLPVFFLRESNGAVHLK-NGEGLFFMSPEDAKAKLAALTNS---ENIRVAATTLDDVFFPLVLKKGANAKPV----------------------------------GA--------------ETSGISDTSAKYHLVARSEQLEKASKLQETLVEIQKDD-VPVWIADTLAFQGV---GRIKIPLFTNYSDLETSWERLKA-SGSKSAAAPRVQVTTIAEVVRKMEKGGGDNRMLEFFADMEAIDQAEKLF 1036 GA AFV P R + R+ G + RI A + G + + + +A V L GASV+ L+A P ++S TV+V E G + +G+LT+ ++R EIQKKLSQLPVF++ + G ++ +G G F+MS +DA A LAAL+++ + VAATTLDDV++PL+ +KG ++ GA G+SD A Y LVA Q A ++ T + + VP+WIAD LAF G G++KIPLFT DL SW RLK +G A P VQV+++ V K E+GGG+ R+LEF+ D+E+I+ AEKLF Sbjct: 16 GAPAFVVPPTARPVLHRSTTSNGLQGCFVQRIHEAPVASRASHRAGAAARTLRMAEGKASGASVAFVLVALALFVGASVMTLLNAPPPAATSSYAPQGTVKVTTESGRVVQRGALTSVCYFTNTTPGACCHGRRSLTRGEIQKKLSQLPVFYISNAQGGAYVGGDGIGRFYMSADDAAADLAALSDAAAPSELSVAATTLDDVWYPLIARKGGASQSARWYAFAARYAGXXXXXXXXXXXXXXXXXXXXXXAGAVLYIRAHVLMKSMRSLEGVSDQHATYRLVASKAQAAHADEVLPTWRGSEGEGAVPLWIADRLAFAGGYGGGKVKIPLFTTLEDLNASWARLKGDAGGSGAPTPAVQVSSLQATVSKFERGGGNARLLEFYPDIESIEAAEKLF 412
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Match: A0A0G4F5C5_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F5C5_VITBC) HSP 1 Score: 110 bits (274), Expect = 1.690e-23 Identity = 80/221 (36.20%), Postives = 120/221 (54.30%), Query Frame = 2 Query: 419 AMSRAEIQKKLSQLPVFFLRESNGAVHL-KNGE---GLFFMSPEDAKAKLAALTNSENIR-----VAATTLDDVFFPLVLKKGA-NAKPVGAETSGISDTSAKYHLVARSEQLEKASKLQETLVEI--QKDDVPVWIADTLAFQGVG-----RIKIPLFTNYSDLETSWERLKASGSKSAAAPRVQVTTIAEVVRKMEKGGG--DNRMLEFFADMEAIDQA 1024 A+SRAEI +KL Q+PVF++ S+G V++ ++G+ G FF+ P +A L L S+ I+ + A L DV+FPLV K+G + P DTSA + +V +++L A K E + +VP+W +LAF+G G R++IPLF DLE SW RLKA P V+ +T+ V +E+GG ++ EFF +AI +A Sbjct: 65 ALSRAEITRKLDQVPVFYVVTSDGRVNIDQSGDRRMGRFFLEPSEATQALEDLKMSDYIQWKDAFIGAARLGDVYFPLVKKEGKLKSFPYYV------DTSAAFAVVPSNKELANAQKRIPNWSEGPGKAGEVPIWGTQSLAFEGDGDSPTSRLRIPLFIRLEDLEESWRRLKAESPTLPDKPDVRASTLGSSVEMLEEGGTPLSPKVFEFFPSPDAIQKA 279
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Match: A0A448YVR1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YVR1_9STRA) HSP 1 Score: 102 bits (255), Expect = 7.130e-21 Identity = 84/256 (32.81%), Postives = 126/256 (49.22%), Query Frame = 2 Query: 254 GTSFKNIAVASVLLVATFGASVLPF-----LSAGPETGSASKTVRVVQEDGTEIIKGSLTAMSRAEIQKKLSQLPVFFLRESNGAVHLKNGEGLFFMSPEDAKAKLAALTNSENIRVAATTLDDVFFPLVLKKG-------------ANAKPVGAETSGISDTSAKYHLVARSEQLEKASKLQETLVEIQKDDVPVWIADTLAFQGVGRIKIPLFTNYSDLETSWERLKASGSKSAAAPRVQVTTIAEVVRKMEKG 967 G SF +I VA VLL S++P L + P A V + G +I A+SR+ IQ+KL+ +PVF++ + G + ++ MS DAK ++ +S V TTLD V +PLVLK+G A AK + + S I + LV +E+A +L +E + DVP++IAD LAF ++PLF N D TS++RL+ + S P ++ TT+ E + MEKG Sbjct: 26 GLSFSSI-VAGVLLAVFLXGSLIPLAGTFDLKSAP---IADSVVTRQDQPGKQIAGSKTYALSRSAIQEKLNTVPVFYVATTGGDGSAQMSTDIY-MSYSDAKVASDSIPSSS---VKGTTLDQVMYPLVLKRGRMRMAPPPAEIEQAEAKIMAGDRSDI------FRLVPSKISVEQAKQLD---LETSQSDVPLFIADRLAFASTKGAQLPLFLNKDDCITSYKRLREAKSSLPEQPNIRTTTLLETLISMEKG 264
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Match: K0RUB9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RUB9_THAOC) HSP 1 Score: 93.2 bits (230), Expect = 1.180e-17 Identity = 77/237 (32.49%), Postives = 120/237 (50.63%), Query Frame = 2 Query: 347 TGSASKTVRVVQEDGTEIIKGSLTAMSRAEIQKKLSQLPVFFLRESNGAVHLKNGEGLFFMSPEDAKAKLAALTNSENIRVAATTLDDVFFPLVLKKG--ANAKPVGAETSGI-----SDTSAKYHLVARSEQLEKASKLQETLVEIQKDDVPVWIADTLAFQGVGRIKIPLFTNYSDLETSWERLKASGSKSAAAPRVQVTTIAEVVRKMEKGGGDN-RMLEFFADMEAIDQAEKL 1033 TG S +V Q+ E + A+S IQ+KL +PVF+L S+G + E LF +S DA+ L+ + V ATT+D V +PL+LKK N K +G S + + S +Y L+ +E A + T +Q +D+P++ D LAF ++PLFT D TS++RL+ S P V+ T++ +VV ME G L F+A+ + + +A+KL Sbjct: 42 TGDLSSSVVTRQDASKEKRQSKFDAVSTQRIQQKLRNIPVFYL--SDGTITATLDERLF-LSYHDAE-----LSRNVGEIVRATTMDQVLYPLILKKEEVVNIKSLGDTPSEVLKAIEARDSKQYKLLPSKAAIEDA---RGTNTVLQPNDLPLFKVDRLAFASNEGPQVPLFTERQDAITSYKRLQEGSSTLPPEPVVKSTSLFDVVESMELGSRPGVGQLAFYANADDVQEADKL 267
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Match: A0A7S4IB04_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IB04_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 6.350e-17 Identity = 87/275 (31.64%), Postives = 134/275 (48.73%), Query Frame = 2 Query: 269 NIAVASVLLVATFGASVLPFLSAGPETGSASKTVRVVQEDGTEIIKGSLTAM---------SRAEIQKKLSQLPVFFLRESNGAVHLKNGEGLFFMSPEDAKAKLAALTNSENIRVAATTLDDVFFPLVLKKG-ANAKPVGAETSGISDT--------SAKYHLVARSEQLEKASKLQETLVEIQKDDVPVWIADTLAFQGVGRIKIPLFTNYSDLETSWERLK-ASGSKSAAAPRVQVTTIAEVVRKMEKGGGDN-RMLEFFADMEAIDQAEKL 1033 IA+A +L++ G+SV PFL + S S T ++ T +L M SR +IQ+KLS +P F+L + G +GE + S DAKA A ++ V ATTLD V +PLVLK+G P E + S Y L+ + +E A+ ++ +E+ DVP++IAD +AF ++PLF D TS+ RL+ A G+K P ++ +T+ E + ME+G L F+A + QA++L Sbjct: 104 TIALAGILVI-FLGSSVAPFLDSFNSDTSDSVTSQLANTAVTRQDPDALKQMQYQSKYDRLSRTKIQEKLSGMPAFYLVD--GTTGEMSGE--IYTSYADAKAASEASSSM----VKATTLDQVMYPLVLKRGRTKMAPPPQEVKRAEEAIERHGSAGSKTYKLIPSAAAVEGAAGMK---MELANGDVPLFIADRVAFASSSGPQVPLFLEKEDAVTSYRRLREAGGNKLPEEPNIRSSTLLEEIDSMERGTRPGVSQLAFYAPERDLIQADEL 366
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Match: B5YM12_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YM12_THAPS) HSP 1 Score: 90.9 bits (224), Expect = 3.320e-16 Identity = 71/232 (30.60%), Postives = 127/232 (54.74%), Query Frame = 2 Query: 374 VVQEDGTEIIKG---SLTAMSRAEIQKKLSQLPVFFLRESNGAVHLKNGEGLFFMSPEDAKAKLAALTNSENIRVAATTLDDVFFPLVLKKG----ANAKPVGAETSGISDTSAK-YHLVARSEQLEKASKLQETLVEIQKDDVPVWIADTLAFQGV-GRIKIPLFTNYSDLETSWERLKASG-SKSAAAPRVQVTTIAEVVRKMEKGG--GDNRMLEFFADMEAIDQAEKL 1033 + ++DG +K A+S +IQ+KL LPVF++ + G + E ++F S +A++ + S ++V TTLD + +PL+LK+G ++ PV ++ ++ K Y LV + L A TL E D+P++I + LAF G G+ ++PLF D TS+ RL+ SG +K P ++ T++ +V+ ME+G G R L+F+ ++E + +A+++ Sbjct: 158 ITRQDGDNKLKNYESKFDALSMEKIQEKLENLPVFYVGDGRG---IMGNENVYF-SYSEAESAAKGIGGSSVVKV--TTLDQIMYPLILKRGNVKVSSVTPVEIRSAQQQQSADKTYKLVPSAAALNDAKDTSTTLKE---GDIPLFIVERLAFAGPDGKPQVPLFLEKIDAITSYARLRESGGNKLPEEPTLRTTSLLDVLDSMERGTRPGVGR-LQFYGEVEDVLKADEM 379
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Match: A0A7S2XPN7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XPN7_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.820e-15 Identity = 82/290 (28.28%), Postives = 139/290 (47.93%), Query Frame = 2 Query: 212 ISRASTVVCMAQE---EGTSFKNIAVASVLLVATFGASVLPFLSAGPETGSASKTVR---VVQEDGTEIIKG---SLTAMSRAEIQKKLSQLPVFFLRESNGAVHLKNGEGLFFMSPEDAKAKLAALTNSENIRVAATTLDDVFFPLVLKKGA-NAKPVGAETSGISDTSAKYHLVARSEQL--EKAS--KLQETLVEIQKDDVPVWIADTLAFQGVGRIKIPLFTNYSDLETSWERLKAS-GSKSAAAPRVQVTTIAEVVRKMEKGGGDN-RMLEFFADMEAIDQAEKL 1033 I R ST + M+ + +G I LV G S+ P L A + + + V ++D +K S +SR +IQ+KL+++PVF+L + + ++S EDA + + V TTLD V +PLVLK+G P E +T L ++ +L KA+ ET ++ D+P+++AD LAF G ++PLF +D TS++RL+ S G + A P ++ TT+ + + MEKG L+F++ + + +A ++ Sbjct: 79 IERGSTFLKMSSDSDDDGPGIGTIVTIVFFLVVFVGTSLAPMLDAARNSPTGDLNLGDSVVTRQDPPGKLKNYENSSDKLSRTKIQEKLNRVPVFYLVSGPN----REMQEKIYLSFEDATSAAGS-----GATVKCTTLDQVMYPLVLKRGRMRMAPPPLEVQQAEETLQAQGLSTKNFKLIPSKAAIKDAAETKTDLADGDIPLFVADRLAFAGDAGPQVPLFFEKADCITSYDRLRESRGDRIPAQPNIRSTTLMDELYSMEKGTRPAVSQLQFYSTADDLMRASEM 359
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Match: A0A1E7FKF1_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKF1_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 6.090e-14 Identity = 62/211 (29.38%), Postives = 109/211 (51.66%), Query Frame = 2 Query: 419 AMSRAEIQKKLSQLPVFFLRESNGAVHLKNGEGLFFMSPEDAKAKLAALTNSENIRVAATTLDDVFFPLVLKKGAN--AKPVG----AETSGISDTSAKYHLVARSEQLEKASKLQETLVEIQKDDVPVWIADTLAFQGVGRIKIPLFTNYSDLETSWERLKASGSKSAAAPRVQVTTIAEVVRKMEKGG--GDNRMLEFFADMEAIDQAE 1027 ++SR+ IQ+KL+ +PVF++ S+ N ++S EDA A V TTLD V +PLVLK+G A P AE + +S+ Y L+ ++ +++ + + ++ K D+P+++AD LAF ++PLF + SD S++RL+ S P ++ +++ E + MEKG G N++ + + + AE Sbjct: 90 SLSRSAIQEKLNAIPVFYITTSDN----NNMSTDIYLSYEDANNVAAG-----GSIVKGTTLDQVMYPLVLKRGRMRMAPPPSEVELAEKNLLSNNEKSYFLIPSTKAIDQYKEFN--VGDLSKSDIPLFVADRLAFASPKGPQLPLFLDKSDCIASYKRLRNGKSSLPEEPTIRTSSLLETLITMEKGTRPGVNQLAFYATEQDLTKVAE 289 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig879.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig879.1.1 >prot_C-tenellus_contig879.1.1 ID=prot_C-tenellus_contig879.1.1|Name=mRNA_C-tenellus_contig879.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=328bp MKATLAFGAWIACSQMGSPNRGATAFVAPYIPRRLNLRTGRVIGSRDTTSback to top mRNA from alignment at C-tenellus_contig879:2992..8596- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig879.1.1 ID=mRNA_C-tenellus_contig879.1.1|Name=mRNA_C-tenellus_contig879.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=5605bp|location=Sequence derived from alignment at C-tenellus_contig879:2992..8596- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig879:2992..8596- >mRNA_C-tenellus_contig879.1.1 ID=mRNA_C-tenellus_contig879.1.1|Name=mRNA_C-tenellus_contig879.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=984bp|location=Sequence derived from alignment at C-tenellus_contig879:2992..8596- (Choristocarpus tenellus KU2346)back to top |