mRNA_C-tenellus_contig8783.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8783.1.1
Unique NamemRNA_C-tenellus_contig8783.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
[Close]
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Match: A0A6H5L1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X4_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.200e-37
Identity = 84/148 (56.76%), Postives = 101/148 (68.24%), Query Frame = 1 
Query: 1276 QFVESFLDQVVTTVVKRQDLEVGIGT----------KGGTAAFSVGEEEQDLRMGVLLSLGVQLDRDRLTTLLRYTDWGPKHAAALYQDLVAAEKGFLEPPCPGTAIRGMENGGNTCYIDSLLFAMFARVDAFDWLLLKPLPPSDPPE 1689
            +F+  FL +VV  VV RQ L  GIG+          +GG     + +EE+D+R+  L+S GV L  + L TLLRY DWGP+ A ALYQ LVAA KG LE   PG  +RGM+NGGNTCYIDSLLFAMFA +DAFDWLL KPLP +DPPE
Sbjct:  544 EFLNGFLHEVVAKVVGRQGLG-GIGSAKGSEGGGDGEGGVLPSPLSDEERDVRVAELMSFGVDLPYEMLLTLLRYKDWGPEAATALYQSLVAAGKGLLERVNPGAPVRGMQNGGNTCYIDSLLFAMFATLDAFDWLLFKPLPSTDPPE 690
[Close]
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Match: D7FS31_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS31_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 7.010e-37
Identity = 83/152 (54.61%), Postives = 100/152 (65.79%), Query Frame = 1 
Query: 1276 QFVESFLDQVVTTVVKRQDLEVGIGTKG-------------GTAAFSVGEEEQDLRMGVLLSLGVQLDRDRLTTLLRYTDWGPKHAAALYQDLVAAEKGFLEPPCPGTAIRGMENGGNTCYIDSLLFAMFARVDAFDWLLLKPLPPSDPPEV 1692
            +F+  FL +VV  VV RQ    G+G  G             G  +  + +EE+D+R+  L+S GV L  + L TLLRY DWGP+ A ALYQ LVAA KG LE   PG  +RGM+NGGNTCYIDSLLFAMFA +DAFDWLL KPLP +DPPEV
Sbjct:  585 EFLNGFLHEVVAKVVGRQ----GLGGTGXXXXXXXXXXXXXGVLSSPLSDEERDVRVAELMSFGVDLPYEMLLTLLRYKDWGPEAATALYQSLVAAGKGLLEKVNPGAPVRGMQNGGNTCYIDSLLFAMFATLDAFDWLLFKPLPSTDPPEV 732
[Close]
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Match: A0A836CLH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH8_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.040e-24
Identity = 77/169 (45.56%), Postives = 99/169 (58.58%), Query Frame = 1 
Query: 1201 VVEEGEKERDLQAMNVGGDVK---TPPRQFVESFLDQVVTTVVKRQD---LEVGIGTKGGTAAFSVGEEEQDLRMGVLLSLGVQ-LDRDRLTTLLRYTDWGPKHAAALYQDLVAAEKGFLEP-PCPGTAIRGMENGGNTCYIDSLLFAMFARVDAFDWLLLKPLPPSDP 1683
            VV+EG+  +  +    G +     T   +FV  +++ VV   V+ Q    L+     +   AA  + E++Q LRM  L SL V  L    L  LLR+ DW  + AAALYQ+LVAA KGFLEP P     +RG  NGGNTCY+DSLLFAMFA   AFDWLL+KPL  +DP
Sbjct:  215 VVDEGDGGKGAEGGGEGAEQDMEATLLLEFVLGYIEGVVRGAVESQAPRRLQ-----QAAAAAPLLSEDDQRLRMAQLASLHVAGLGEAELVLLLRHCDWSAQRAAALYQELVAAGKGFLEPVPAAPERVRGATNGGNTCYLDSLLFAMFACTSAFDWLLMKPLRRTDP 378
[Close]
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Match: A0A1X2HU22_SYNRA (USP domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HU22_SYNRA)

HSP 1 Score: 69.3 bits (168), Expect = 9.240e-9
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 1 
Query: 1387 EEQD-----LRMGVLLSLGVQLDRDRLTTLLRYTDWGPKHAAALYQDLVAAEKGFLE-PPCPGTAIRGMEN-GGNTCYIDSLLFAMFARVDAFDWLLLKPLPPS 1677
            EEQ+     L+   LL  G++++ +R+  LL+Y DW  K A     D  AA  G L  PP     + G EN GG +CYID+LLFAM+  + AFD LL   + P 
Sbjct:   39 EEQEGLMSQLKKYALLHFGLEIEFERVRALLQYNDWDLKRAMTDLDDCQAAHVGLLHAPPTASQTLLGCENDGGTSCYIDALLFAMYITLTAFDPLLTCEVSPD 142
[Close]
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Match: A0A397G3K6_9GLOM (USP domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397G3K6_9GLOM)

HSP 1 Score: 64.3 bits (155), Expect = 3.340e-7
Identity = 38/92 (41.30%), Postives = 48/92 (52.17%), Query Frame = 1 
Query: 1384 EEEQDLRMGVLLSLGVQLDRDRLTTLLRYTDWGPKHAAALYQDLVAAEKGFLEPPCPGTAIRGMENGGNT-CYIDSLLFAMFARVDAFDWLL 1656
            E + D     L  LG  L+  ++ TLL   DW     A   +DL  AE+G +        + G EN  NT CYIDSLLFAMFAR  +FD +L
Sbjct:   65 ESKVDQLRTYLEELGNPLETSQIETLLERNDWNVAEVAEYCKDLCEAEEGLIADLQKNDVMIGAENDQNTSCYIDSLLFAMFARTQSFDGML 156
[Close]
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Match: A0A1X0SEZ9_RHIZD (Cysteine proteinase n=4 Tax=Rhizopus TaxID=4842 RepID=A0A1X0SEZ9_RHIZD)

HSP 1 Score: 62.8 bits (151), Expect = 1.060e-6
Identity = 37/89 (41.57%), Postives = 46/89 (51.69%), Query Frame = 1 
Query: 1429 VQLDRDRLTTLLRYTDWGPKHAAALYQDLVAAEKGFLEPPCPGTAIRGMEN-GGNTCYIDSLLFAMFARVDAFDWLLLKPLPPSDPPEV 1692
            + LD D   +LL   DW  K A A   D   A  G L  P  G  + G EN GG +CYID+LLFAM+     FD LL   +PP +  +V
Sbjct:   52 LSLDSDIFESLLEDNDWDLKKAIADLSDYEEASHGILVEPPQGQVLLGPENDGGTSCYIDALLFAMYISNTTFDPLLTYDIPPENEAKV 140
[Close]
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Match: A0A8H7VE95_9FUNG (USP domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VE95_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 2.140e-6
Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1 
Query: 1429 VQLDRDRLTTLLRYTDWGPKHAAALYQDLVAAEKGFLE-PPCPGTAIRGMEN-GGNTCYIDSLLFAMFARVDAFDWLL 1656
            + +++D+L +LL    W  K A A   D   A  G L  PP    +I G EN GG +CYIDSLLFAM+  + AFD LL
Sbjct:   59 IAIEQDKLRSLLENNAWNLKRAMAELDDCEEAYHGLLHGPPAANDSILGCENDGGTSCYIDSLLFAMYTSLTAFDPLL 136
[Close]
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Match: A0A2C5ZFB4_9HYPO (USP domain-containing protein n=1 Tax=Cordyceps sp. RAO-2017 TaxID=2004951 RepID=A0A2C5ZFB4_9HYPO)

HSP 1 Score: 61.6 bits (148), Expect = 3.260e-6
Identity = 37/100 (37.00%), Postives = 51/100 (51.00%), Query Frame = 1 
Query: 1387 EEQDLRMGVLLSLGVQLDRDRLTTLLRYTDWGPKHAAALYQDLVAAEKGFLEPPCPGTAIRGMENG-GNTCYIDSLLFAMFARVDAFDWLLLKPLPPSDP 1683
            EE   R+  L    V +D  R     ++ D  P  AA        A+ G +    P  ++RG EN  G TCY+D+LLFAMFA++DAF+ +L    P  DP
Sbjct:   68 EEIQRRLDELDITSVSIDHMRDIMATKFADGDPDRAAQFIDIEQKAQAGIVVSYDPSVSLRGAENREGVTCYLDALLFAMFAKLDAFECMLKNDFPLDDP 167
[Close]
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Match: A0A0L0SNV1_ALLM3 (USP domain-containing protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SNV1_ALLM3)

HSP 1 Score: 60.8 bits (146), Expect = 5.720e-6
Identity = 38/80 (47.50%), Postives = 45/80 (56.25%), Query Frame = 1 
Query: 1438 DRDRLTTLLRYTDWGPKHAAALY-QDLVAAEKGFLEPPCPG--TAIRGMENGGNTCYIDSLLFAMFARVDAFDWLLLKPL 1668
            DR  +   L  T W    AA  Y  D  AA  G L P  P   T ++GMEN GN+CYIDSL+FA+FAR  A D LL + L
Sbjct:  162 DRAAVEQALAATAWRSIDAAVEYLDDWTAAHNGRLYPVDPNATTWLQGMENAGNSCYIDSLVFALFARSTAMDALLTQDL 241
[Close]
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Match: A0A0U5GCA7_ASPCI (Putative Ubiquitin C-terminal hydrolase family protein n=1 Tax=Aspergillus calidoustus TaxID=454130 RepID=A0A0U5GCA7_ASPCI)

HSP 1 Score: 58.2 bits (139), Expect = 2.270e-5
Identity = 34/82 (41.46%), Postives = 50/82 (60.98%), Query Frame = 1 
Query: 1423 LGVQ-LDRDRLTTLLRYTDWGPKHAAALYQDLVAAEKGFLEPPCPGTAIRGMENG-GNTCYIDSLLFAMFARVDAFDWLLLK 1662
            LG+  L+ + LT  L+YT    + A  L   L  + +G ++   P T + G EN  G TCY+D+LLFAMFAR+D+F+ +L K
Sbjct:   65 LGISGLNEEHLTYALKYTQGDVERAFELLLLLEDSIEGLIKGYSPSTKLLGAENREGVTCYLDALLFAMFARLDSFEGILYK 146
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8783.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5L1X4_9PHAE1.200e-3756.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS31_ECTSI7.010e-3754.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLH8_9STRA3.040e-2445.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1X2HU22_SYNRA9.240e-940.38USP domain-containing protein n=1 Tax=Syncephalast... [more]
A0A397G3K6_9GLOM3.340e-741.30USP domain-containing protein n=1 Tax=Diversispora... [more]
A0A1X0SEZ9_RHIZD1.060e-641.57Cysteine proteinase n=4 Tax=Rhizopus TaxID=4842 Re... [more]
A0A8H7VE95_9FUNG2.140e-644.87USP domain-containing protein n=1 Tax=Mucor circin... [more]
A0A2C5ZFB4_9HYPO3.260e-637.00USP domain-containing protein n=1 Tax=Cordyceps sp... [more]
A0A0L0SNV1_ALLM35.720e-647.50USP domain-containing protein n=2 Tax=Allomyces ma... [more]
A0A0U5GCA7_ASPCI2.270e-541.46Putative Ubiquitin C-terminal hydrolase family pro... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8783contigC-tenellus_contig8783:164..4848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FS31
PFAMsUCH_1
Model size1692
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue9.2e-41
EggNOG OGs2CXTA@1|root,2RZJR@2759|Eukaryota
DescriptionUbiquitin carboxyl-terminal hydrolase
Cds size783
COG categoryO
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8783.1.1prot_C-tenellus_contig8783.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8783 164..3137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790127.3515522-CDS-C-tenellus_contig8783:163..2481680790127.3515522-CDS-C-tenellus_contig8783:163..248Choristocarpus tenellus KU2346CDSC-tenellus_contig8783 164..248 -
1680790127.3662994-CDS-C-tenellus_contig8783:749..8901680790127.3662994-CDS-C-tenellus_contig8783:749..890Choristocarpus tenellus KU2346CDSC-tenellus_contig8783 750..890 -
1680790127.3788595-CDS-C-tenellus_contig8783:1228..13921680790127.3788595-CDS-C-tenellus_contig8783:1228..1392Choristocarpus tenellus KU2346CDSC-tenellus_contig8783 1229..1392 -
1680790127.388029-CDS-C-tenellus_contig8783:2191..25111680790127.388029-CDS-C-tenellus_contig8783:2191..2511Choristocarpus tenellus KU2346CDSC-tenellus_contig8783 2192..2511 -
1680790127.3968248-CDS-C-tenellus_contig8783:3064..31371680790127.3968248-CDS-C-tenellus_contig8783:3064..3137Choristocarpus tenellus KU2346CDSC-tenellus_contig8783 3065..3137 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790127.4103591-UTR-C-tenellus_contig8783:3137..32411680790127.4103591-UTR-C-tenellus_contig8783:3137..3241Choristocarpus tenellus KU2346UTRC-tenellus_contig8783 3138..3241 -
1680790127.425689-UTR-C-tenellus_contig8783:3320..35111680790127.425689-UTR-C-tenellus_contig8783:3320..3511Choristocarpus tenellus KU2346UTRC-tenellus_contig8783 3321..3511 -
1680790127.4369526-UTR-C-tenellus_contig8783:3895..39911680790127.4369526-UTR-C-tenellus_contig8783:3895..3991Choristocarpus tenellus KU2346UTRC-tenellus_contig8783 3896..3991 -
1680790127.4539816-UTR-C-tenellus_contig8783:4330..48481680790127.4539816-UTR-C-tenellus_contig8783:4330..4848Choristocarpus tenellus KU2346UTRC-tenellus_contig8783 4331..4848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8783.1.1

>prot_C-tenellus_contig8783.1.1 ID=prot_C-tenellus_contig8783.1.1|Name=mRNA_C-tenellus_contig8783.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=261bp
MKFEGEDRDEASCEGETGVFTSRSVASKVRDSPNSQKLTMVGAEDPTLLV
IGQASDIFPRALPSVQRLKEEREGEGEGSNNMKGLSHDREGSEGNECVVE
EGEKERDLQAMNVGGDVKTPPRQFVESFLDQVVTTVVKRQDLEVGIGTKG
GTAAFSVGEEEQDLRMGVLLSLGVQLDRDRLTTLLRYTDWGPKHAAALYQ
DLVAAEKGFLEPPCPGTAIRGMENGGNTCYIDSLLFAMFARVDAFDWLLL
KPLPPSDPPEV
back to top

mRNA from alignment at C-tenellus_contig8783:164..4848-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8783.1.1 ID=mRNA_C-tenellus_contig8783.1.1|Name=mRNA_C-tenellus_contig8783.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4685bp|location=Sequence derived from alignment at C-tenellus_contig8783:164..4848- (Choristocarpus tenellus KU2346)
AAAGTCGAGGTCCCCCGATACCTCCGCCATCAATCTGGGCACACGGTCTA
TCAGGTGGAGGTGCAACTCGTCGATACTGGCCAGGTGAGAACGCTGGTAA
AGATACTCTTGTCCTTGAAATGTTCATTCAACCACCGGTCGTCCCACAAC
CCCATCTTGAACTTCTTGTCCTGATACCACTTAAATAGTTGTGGGTAGTC
TACAAGAGATATTCGCAATTCAAGGGCCTCCTGAAGCAACTCAAGGAATT
TCTCATGGAGAAGTCTGTCCATGATGGTGGGAGGAGTAAGCCGTCAGACT
CGTGGACAAGGCATGAATTTGACAGTACCTCCCCAATAATTGATAAGCTG
ACTGGGGTTGGGGTGACGACAATGGAAGGGGTCGGGACAATGAAGGATAG
CCTGCGAAATATCCTGTCAAGCTACCACACACCAAGAAGTGCTGTTTCTT
TGACTTTTGGAAGCGGTGCTGCGAAGGAGGGACGGAGAGTGACGTTCAAT
GCCTACTTGTGCAAGCTGGTGAGAAAAAAGAAGAGGCAGACCATACTTTA
CGGTAGTAAACATGTTAGAGCAAAATGAATCTCTATGATAGTTCTTGTCA
GTGGTGTGAGGAGCTAGGTGCACATTGATTGCTGTACGTCAAGTAGATGT
GACAACTCTCAGTGAAAGTCCATCATTCATTGGTCCAGGAAGTTGTTAAG
ACATTGCAACTCTATGGCAATGTGAATACTGACTCTATGCTCTAAGTAGG
TAGTGGAAAGACTCCAATCAATTAGAGCCAAGTGTTGAATTTATTTTATA
CTCTGCTGCTTTGTCTATTCTATCACCTCCTAACTCCTGTTTCCGTTTTT
GGAACAGGTTCAACTGCGGCCGCTCCCTGCTCTTGTGGGTGCTTTTCTAG
GCCTACTGCACGACCAGCGACTGGGTTTGGACGATAAGGGAAACTATGTG
CAGGTACAAAAGACAGCTGGGTTTTATATCTTTTTGGGGGTCTGTTGTGA
ACAGAGAGGTTTAAATCAAAGGTGCTATGCTTGTTGTAAGAACTGTGTCC
AACTATACTATGTGAATATCCAATAGTTGTCTGTGCTGTGCAACCCACGA
GAGGTAGAGAACTAATGGAATGTAATTTTTTTTTTTTGTACGGAGCATGT
ACAGTCACCATAAAAATCTTCCGACTCCCTTTTTAATGTACCCACTCTAG
GCAAGAAAATTGAGGCAAGTACATCAAAGCTTCTGTATAGAACTTACAAC
AGGAACTATTCGATGATAATTATGGCAAGTAGAGACTCACAACCAACAAA
GAACTTGCACTCAAAGTCACATGCTTTACACTTCCAGGTGATGTGTGCCT
TTGATGACCTGCTTCCTTTGCCTGACTCCCCCCAACCTGGGAATGAAACG
GCAGCGGAAGAGGGTGCCAGTGTAGCCCCAGCAGCAGTGACATCACCATG
GGCAGAGGGGATAGCAGATACAACAAGGACAGGTGTTGGAATAGGGACTA
CAGTGCAGGAGACTCGGGGTAGGGCAGTGCTTGNNNNNNNNNNCCCCTTA
ATCTTCCATTGCAGTGGTGAGTTGCACTGAGGCAAAGCTCCTTCCGTTTC
TTGGCAGTGCTTGGTACCTCATTATGGGAAGGAGCTGAGCTGCCAAGTGT
CAGGTCAGGGCTGGGGTCGGATGTGGGCACTGATTCTGCAACGGATGACT
CAGAGGATGATATGAAGTTTGAGGGGGAGGATAGGGACGAGGCTTCATGC
GAAGGAGAAACTGGTGTATTCACGAGTCGTTCAGGTAATAATGGTTTAAC
TCTCCTTCCCTAGCTCTTCCTTTTCCCCCTTAATCTTCCATTGCAGTGGT
GAGTTGCACTGAGGCAAAGCTCCTTCCGTTTCTTGGCAGTGGTGATTTTG
CTATTTTTCTGATTTGTGTCTTCCAAGCAATCAGTCAGGTCCAAAGGAGG
TGTATCCCCATATTTTTTTACTGCATCACATCGAAATACTAGGTGGTTTG
CTCAAGGGTGATGTGTGCCTTACGCTGTGCATGTAACACATATAGTGTGA
AATAGGAAGTTGGGGGAGGGGGGTCAAACCTAAGGGCGGCGATATTTGTA
CTCTCAAAGGTGTGCCTTGCATGTCTGCTGTCTCCTCAAGATGTATCACG
AGTTGAAAGAACTGAAAAATACCTAAATTTGGTAACGCATCAGACCGATT
CTTGGATTGTTGAAACACTCTGTTTTGCCCCCTCACCCTTCTCCTTCCTC
TAATGAGAAAGTGATACCTCAAATTCCTTACCTGACTCTATCTATTGACT
AAGAACTGTCCACTCTGAAAATCCTTGTTTGTTACAGTGGCTTCGAAAGT
TAGAGATTCTCCAAACAGCCAAAAACTGACCATGGTTGGGGCTGAAGACC
CTACCTTGCTGGTGATTGGGCAGGCGTCTGACATTTTCCCCAGGGCACTG
CCATCAGTGCAACGTTTAAAGGAGGAGCGGGAAGGGGAAGGGGAAGGCTC
CAACAATATGAAGGGATTGAGCCATGACCGAGAGGGCAGTGAGGGGAATG
AGTGTGTAGTAGAGGAGGGGGAGAAGGAGAGGGATCTGCAGGCAATGAAT
GTGGGTGGTGACGTGAAGACTCCTCCTCGTCAGTTTGTGGAGAGTTTCCT
GGATCAGGTAATATTATCATGTCAAATACTTCGAGATGCAAGTGTAAATA
TCTATGTAGGTAAAACCCTAACCCTAACCCTAACCCTAAGCTTTTTCAAG
CGGTCTAAGGACTTTTGAGGTGTTGAGAAAATGTCAAGGATGACACCCCT
GGAGTTTTTTGTTGTTTTTGTAAGGTTTGGATTACTTGGGAGCAATACAC
TAGTATTGTGCCGTGGAGTTAAATATATCTTATGTGTTGACCATACATTT
GATGACGTACAAACCTATGTTTGGTGCCGTGCCCATAAGGAACATATTAT
GCTCTTGCTGGGATTGTTCGCTAGGGAGTAGATATACCAAGAGCTTGTCG
ACTGCAGAGTACTATAGTTTCCAAGGGGTTTGTGTTTTTGTTTCTTGTCA
CAATGACACAAGCAACATTCCTGTAGTTTTAGAAGAGTCCTTCCTGAGCA
TTGGCCAAGCTTTTGTTCTTCAGGCAATGAGAGGTGACAGACAACAGCTG
TGACAGTCCTCTAGTATACCTATTGTATCATCGATGTCATCATAGCAGAG
CAGTGATTAAAGCAATGATATTTTAGTTATTGTGGTGTTTTAGATGCACT
GATATTGCCTGCTGATTGTTGTGCAAAATGGAGCCCAATGCTATCCTCTG
ATTGTTAAGAAGCTGACAAAAAGTAATGATCTCTCTCTTGCAGGTACAAT
CTCATGTGATCCTCAATGTTATCCTCAGTGCTAACAACCCTGTTATGATA
GTTGTGGTGTCACCTCTACCTTTGGGGTATCTTCCCCCCTCCCCCTCTCC
ACACAGGTGGTAACAACTGTAGTCAAGCGGCAGGACCTTGAGGTTGGGAT
TGGGACCAAAGGGGGAACTGCTGCTTTCAGTGTGGGAGAGGAGGAGCAAG
ATTTGCGCATGGGGGTGCTTCTCAGCTTGGGCGTGCAATTGGATCGAGAC
CGCCTCACAACCTTGTTGAGGTGGGTACATTACCCCATCCTGCCTCTGCC
CAGGGTTGGTGCTGTTGTGCTATGGAGCAGCAGTACATCATTAATGTAGT
TTGATCGATGTTTTAATAATCTACTTCAACTTATACCTTTGTACGCCGTG
CCCCAAATGTAAATCCCCTCTCTCTTGCCCTGATTTTTCTTGAAAATCAC
TATTATTGTCTATTTTATAGAATGATGTGGGGGGCTGTGTTTGTACTGTG
GTAGCTGGTCCCTTTAGCTGTAGCTGGTCCCTTTAGCTATCCCTTGTACT
TCCTCGAACAACACCACCGATCTTGTGTCTGCTGTTTTTGCTTTGCAACT
TGAGAAAGGTACACTGATTGGGGACCGAAGCATGCAGCAGCCCTCTACCA
AGACCTAGTTGCAGCTGAAAAGGGCTTCCTGGAGCCTCCTTGCCCCGGCA
CAGCAATCCGTGGAATGGAGAATGGAGGAAACACTTGTTACATTGACAGG
TTGGAGGACAGCAGCAGCAATAGGGTTGCTATGTATATGCCAATGGTTTG
GTTCTGTGTATAGGCATGTGTGTGTATGCCTGCCTTGTATGCCCTTGTTT
TGTCCTTTGTGATATTAAGTATTTTGGTATGTACTCTAGGGCACATGATA
TTATTGTATTAGTCACAATATACACAAGGTGACCATGCAGTACTTGAAGT
ATGCTCATCCTAAAATTTGGTTGAAGGGAGAAACACTGACATTGTTGCTT
CTAGAACAGCAAAGGTATGGTGAAATGTGATGAAGGGGTGGTGTGGGGAC
GGGGGGCCGTAGCTGCCAACAATTCAAGACAACATATTCTAAAAGAGTAA
TGCATGTATGTGCTCTCAAATACTAACCTTGAAAAACCTTCCTATTCTCT
CCCCACCCACAACCACTACCCCACCTGAAGACATACAACCTGACCCATTC
AACGACCCCTTGATACCAACAATGTTAATGTTGACCTATTTCCTGTGCAG
CCTCCTGTTTGCAATGTTTGCCAGGGTGGATGCTTTTGACTGGCTTCTGC
TCAAGCCCCTGCCCCCTTCTGACCCACCAGAGGTA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8783:164..4848-

>mRNA_C-tenellus_contig8783.1.1 ID=mRNA_C-tenellus_contig8783.1.1|Name=mRNA_C-tenellus_contig8783.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=783bp|location=Sequence derived from alignment at C-tenellus_contig8783:164..4848- (Choristocarpus tenellus KU2346)
ATGAAGTTTGAGGGGGAGGATAGGGACGAGGCTTCATGCGAAGGAGAAAC
TGGTGTATTCACGAGTCGTTCAGTGGCTTCGAAAGTTAGAGATTCTCCAA
ACAGCCAAAAACTGACCATGGTTGGGGCTGAAGACCCTACCTTGCTGGTG
ATTGGGCAGGCGTCTGACATTTTCCCCAGGGCACTGCCATCAGTGCAACG
TTTAAAGGAGGAGCGGGAAGGGGAAGGGGAAGGCTCCAACAATATGAAGG
GATTGAGCCATGACCGAGAGGGCAGTGAGGGGAATGAGTGTGTAGTAGAG
GAGGGGGAGAAGGAGAGGGATCTGCAGGCAATGAATGTGGGTGGTGACGT
GAAGACTCCTCCTCGTCAGTTTGTGGAGAGTTTCCTGGATCAGGTGGTAA
CAACTGTAGTCAAGCGGCAGGACCTTGAGGTTGGGATTGGGACCAAAGGG
GGAACTGCTGCTTTCAGTGTGGGAGAGGAGGAGCAAGATTTGCGCATGGG
GGTGCTTCTCAGCTTGGGCGTGCAATTGGATCGAGACCGCCTCACAACCT
TGTTGAGGTACACTGATTGGGGACCGAAGCATGCAGCAGCCCTCTACCAA
GACCTAGTTGCAGCTGAAAAGGGCTTCCTGGAGCCTCCTTGCCCCGGCAC
AGCAATCCGTGGAATGGAGAATGGAGGAAACACTTGTTACATTGACAGCC
TCCTGTTTGCAATGTTTGCCAGGGTGGATGCTTTTGACTGGCTTCTGCTC
AAGCCCCTGCCCCCTTCTGACCCACCAGAGGTA
back to top