mRNA_C-tenellus_contig877.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig877.1.1
Unique NamemRNA_C-tenellus_contig877.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig877.1.1 vs. uniprot
Match: D8LGM9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM9_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 1.300e-42
Identity = 191/363 (52.62%), Postives = 220/363 (60.61%), Query Frame = 1 
Query:    1 ISSLVAVVKMAQADGQRELEQIHLKGLRVNDEDAEALSNALISSGAVVRSISLASNDIGDRGAAALARLLQDEP-GYRCMLSSXXXXXXXXXXXXXXXXSKRIRNNTTLTTLDLSSNPLGPSGGLHLAEASWLMLKENFTLEALVVNNTEMTETGFIALISILREGNNTVRELSIGGQLLHSREEVAVRHMARMLETPPCMIRKLDLSKSSIGDEGASLLRAALHRHPTLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQKFASLESGRFALVGVSTDVKVFVVDGVYQAAEK 1086
            ++ L   V  A A G+ +L+ I L+GL+V DED E +  A+ISSG  +R+IS+ASNDIGD G  +LARLL DEP  Y  +LSS                ++R+R                                               TE GF A++++LREGNNTVRELSIG QLL SREEVA  H++R LETPP M+R LDLS   IGDEGA +LR AL  HPT+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            L++F  L  GRFALVGV  DV+ FVVDGVY AAEK
Sbjct:   16 VAQLWETVSRAVAVGEVQLDTIRLEGLQVTDEDVEKIVGAVISSGLAIRNISVASNDIGDAGVGSLARLLDDEPPSYSSVLSSLDLRGNSIGSKGCQLLTERLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----XXXXTEAGFTAVLAVLREGNNTVRELSIGSQLLRSREEVAACHVSRTLETPPYMLRLLDLSGCGIGDEGAYVLRGALTGHPTMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDALAEGMECNASVERLFVWGNHFGQASLKRFGGLGGGRFALVGVFLDVQPFVVDGVYHAAEK 374
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BLAST of mRNA_C-tenellus_contig877.1.1 vs. uniprot
Match: A0A8B7AHV8_ORYAF (Ribonuclease inhibitor n=1 Tax=Orycteropus afer afer TaxID=1230840 RepID=A0A8B7AHV8_ORYAF)

HSP 1 Score: 62.8 bits (151), Expect = 3.740e-7
Identity = 53/184 (28.80%), Postives = 86/184 (46.74%), Query Frame = 1 
Query:  142 VRSISLASNDIGDRGAAALARLLQDEPGYRCMLSSXXXXXXXXXXXXXXXXSKRIRNNTTLTTLDLSSNPLGPSGGLHLAEASWLMLKENFTLEALVVNNTEMTETGFIALISILREGNNTVRELSIGGQLLHSREEVAVRHMARMLETPPCMIRKLDLSKSSIGDEGASLLRAALHRHPTLRV 693
            ++ +SLA N++GDRGA  L   L+ EPG  C L S                S  +  N +L  L +S+N LG +G   L +A   + +   TL  L + + ++T+ G  AL S+L   N ++REL +    +    +  V  +A  L  P C + +L L    + +E    L+      P+LR+
Sbjct:  281 LKELSLAGNELGDRGAQLLCEALR-EPG--CRLESLWVKSCGFTDACCPNFSSMLAQNKSLLELQMSTNRLGDAGVRQLCQA---LGQPGATLRMLWLGDCDVTDDGCSALASLLLS-NRSLRELDLSNNCMG---DPGVLKLADSLRQPDCALEQLVLYDIYLTEEVDDHLKTLEDSKPSLRI 454
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig877.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGM9_ECTSI1.300e-4252.62Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A8B7AHV8_ORYAF3.740e-728.80Ribonuclease inhibitor n=1 Tax=Orycteropus afer af... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig877contigC-tenellus_contig877:2184..6297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGM9
Preferred namelrrc34
PFAMsLRR_6
Model size1095
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue6.77e-42
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-10_002850.1
Descriptioninterleukin-8 biosynthetic process
Cds size1068
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig877.1.1prot_C-tenellus_contig877.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig877 2211..6297 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790125.9168954-UTR-C-tenellus_contig877:2183..22101680790125.9168954-UTR-C-tenellus_contig877:2183..2210Choristocarpus tenellus KU2346UTRC-tenellus_contig877 2184..2210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790125.9303875-CDS-C-tenellus_contig877:2210..22881680790125.9303875-CDS-C-tenellus_contig877:2210..2288Choristocarpus tenellus KU2346CDSC-tenellus_contig877 2211..2288 +
1680790125.939647-CDS-C-tenellus_contig877:2448..26311680790125.939647-CDS-C-tenellus_contig877:2448..2631Choristocarpus tenellus KU2346CDSC-tenellus_contig877 2449..2631 +
1680790125.9524117-CDS-C-tenellus_contig877:2839..29471680790125.9524117-CDS-C-tenellus_contig877:2839..2947Choristocarpus tenellus KU2346CDSC-tenellus_contig877 2840..2947 +
1680790125.9631639-CDS-C-tenellus_contig877:4705..48581680790125.9631639-CDS-C-tenellus_contig877:4705..4858Choristocarpus tenellus KU2346CDSC-tenellus_contig877 4706..4858 +
1680790125.9746776-CDS-C-tenellus_contig877:5169..54801680790125.9746776-CDS-C-tenellus_contig877:5169..5480Choristocarpus tenellus KU2346CDSC-tenellus_contig877 5170..5480 +
1680790125.985936-CDS-C-tenellus_contig877:6062..62971680790125.985936-CDS-C-tenellus_contig877:6062..6297Choristocarpus tenellus KU2346CDSC-tenellus_contig877 6063..6297 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig877.1.1

>prot_C-tenellus_contig877.1.1 ID=prot_C-tenellus_contig877.1.1|Name=mRNA_C-tenellus_contig877.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=356bp
MAQADGQRELEQIHLKGLRVNDEDAEALSNALISSGAVVRSISLASNDIG
DRGAAALARLLQDEPGYRCMLSSLDLRGNDIGGKGCELLSKRIRNNTTLT
TLDLSSNPLGPSGGLHLAEASWLMLKENFTLEALVVNNTEMTETGFIALI
SILREGNNTVRELSIGGQLLHSREEVAVRHMARMLETPPCMIRKLDLSKS
SIGDEGASLLRAALHRHPTLRVLNLSCNRIGITGGEVLAALLIEGSDLAE
LSLRANAIGDDGARAFKVVLQNSKTLRMLDLRNNGIGDSGLEALSEGIEW
SASLERLLVWGNLFGQSSLQKFASLESGRFALVGVSTDVKVFVVDGVYQA
AEKQA*
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mRNA from alignment at C-tenellus_contig877:2184..6297+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig877.1.1 ID=mRNA_C-tenellus_contig877.1.1|Name=mRNA_C-tenellus_contig877.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4114bp|location=Sequence derived from alignment at C-tenellus_contig877:2184..6297+ (Choristocarpus tenellus KU2346)
ATATCGTCATTGGTTGCTGTGGTCAAGATGGCCCAGGCAGACGGTCAAAG
GGAGCTAGAGCAAATCCACCTGAAAGGGTTAAGGGTTAATGATGAAGACG
CCGAAGTGAGGAGTGCAAGCTAGGGTGGTGACAACATCCTGCCTCATTCC
TCATACTCTACTGTCGAGTGCATGTTGTTCTCTTTAGTCACAATGAAGGG
AAGAGATAAATTACAAAACACAACACAAGGACTTTCGTTCCCGTTGTTCA
CGCAAAACGTGACAGGCCTTATCGAACGCCCTAATATCGAGCGGCGCGGT
AGTCCGAAGCATCTCCCTGGCAAGCAATGATATCGGAGATCGTGGTGCGG
CAGCGTTGGCTCGCCTACTGCAAGATGAGCCAGGATACCGTTGCATGTTG
TCCTCGTTGGATCTCCGCGGGAATGATATTGGTGGCAAGGGCTGCGAGGT
GCGAGTCAAGACATTTTATGTTCAGAGGATTTGATTTTTTCTGTGAAGTA
CCTCCATTCCCCTCTTCCATAAAATTCAGTTGCAATTTCCTGGGAGGAGC
AACTGTTGATGAACAGGCAAGGCTATGTGCATAGACTGACTGACCGACTG
GTGTATTCCATACCCTTCACCTACAACCATCCTTGTGACGGTGAATCCCC
ACACAGCTTCTCTCAAAGCGTATTCGGAACAACACCACTTTGACAACCTT
GGATCTAAGCTCAAATCCACTCGGACCTAGTGGGGGCCTTCATCTTGCTG
AGGCAAGTTGGTTGGTTCAATGCTCAATGTTCACCACTGGTTTTGACTGT
TCCTCTTTCTTGGTAGGATGTTCTTGGCAGATTTGGAGAATTAGCAAGCC
TCCCTGTGAGGAAACCAGCTCCATGATCGCTCTGGACAAGGGTCACAAGT
TATGCAAGTGTAGTTGAAAAGAACACATGTATCTTTGTCGTGATGATGGA
CTAGGGTGCAGGATAAGACACCTTTCCCAACCATTCTACCACACATTGGA
CCACATTGCTGTTGTATAGATCTGCTGTGAAGTTCTTACTTTAAATATTC
ATACCCCCTTGTCTTCGTGCCAAGAAATATATAGCATGTGATTAAACTGA
CACCACATCGCGGTATATCAGGATTGTACTGGGAACACATTTTGCTGAAA
GGTCCGACCAATATTGCCTCAGTATGACTTCATTCCTTTTGCTATACACC
ACGTTGTGAAAGGAGGGCTCACAAGAACCAGCATAAGAAGTACTGCGTAC
TGCACCAACCACTAAAACTGTAGTTTGCACGCTCTCTCCACTCAAGTGAA
TTAAATTCCTTGTCATACACTTTGAGCCAAACCAATTGAGAGGTAGGCAG
GGTTGCATCTAAAGCATCCCAAGAAAGGGCAATAATATGATATTTTGTGC
AATTGCAGAGAGAGCCTTTGCTTAATGGTGGTGTCACATTATGTGTAAAA
GGGGAACATCAATTTTGGGTACACTAATGTGCACATCAAGCATTAAAATA
TTGTGCACAGATAAGGGCGATGGCTTTGACTTCAAAACGGTCAAAATCTT
CCTACCTCTCAGATGGTTAGACTCTTTGTGTGTGTCCTCAATTGGGATAT
ACTGGTTTCCTTTTCGTCCACTACACAGGTGATTAATAGGTTGCCGAAAA
ACTGGACAATCTTGAAAGCGAAACATACAATAAGAACCTTTGTTGGAACA
TTGTCATAAAAATTTTGCTTCAAGCTCTGTCCCAAAGACTCGTTTTTCTA
AAGTAATAAAACAACAAATAGAAAACAAATGAGAACTGATCCTTCAAATT
CAACCTATAACCCCTCAACCCTACTTCCATCACTGTTTTTGTATTGGTAT
ATCGGATTTTTCGACCCTGCAGAGATGAATCCAAATCCACGTGGACAAAC
CACCTCTCCCCCTTTTTGTCACTTTATCTGAGAACCTTGATTTGACAACA
ATGCTGGGTCTCACGTCCGGACTACCATAGCAGACTTGTGCAGTCTCAGT
GACAATTGGAATATAAAACAAAATTGCATTTGTAGAATTGTGAGTCTCCT
GTGTCTCCAACTTGTAATGCAAGTCGTTTGGTCGTGAAGGAAGAAAGCAC
AGCAGCAAAGTGGAACACTGAACAAAATGACCATAAAAGAAACAACAGGA
CCTGCAGGTTGTGTTTTTCGGAGACAATGTTGACTTCTTTTTTTCCCAAT
GAGTGAGACTTCCTCCCTCCCCTAAATTAGTCATCAACATCTAGTGATTC
CAACACATTATATGTTGATTTTGGAATGGACCTAAGGCTTGAAATTTCTA
CAATATAATATTCTACAGCAGTAAGAGCAATTTGAAGCCATGATCAAGAG
TGAGTGTACTCGGAATGCACATCAACACTAATTGTCCGAGTGACCTGTGG
AAAAAAAAAGTTGTTAGATTTCAAAGAAAGCTTTTTTGTGCTATTGTATA
TTTCGCAGTGAGATGTAAATGAGTGTACCTTTTTGTACCATTCTGAATTT
GTTAAAACCATACATGCAACAGATGCTCAAGGAGAACTTCACTTTGGAAG
CACTGGTGGTGAACAATACAGAGATGACAGAGACAGGTTTCATTGCTCTC
ATCTCTATCCTGAGGGAGGGAAACAACACCGTCAGAGAGCTAAGCATTGG
GGGGCAGCTCTTGCATTCCCGTGAGGTGTGCACCTGTGTGTAACATACAT
GATACAACAATCAATCGAGGTAGGCAGAGTGAAACAGGGTGGAGTCACAT
TGCAGAGGCCCTGATTGTTTCACCTCAAGATTCGATAGACTCAAACAAGA
ATGTATCACACAAAACCAATTGTGTATCCATCTCATGTTGTAGAATTCAC
ACAAGCCCTCTATCCCTAGAATGGACGCAATTTCATATTGTTATGAATGA
ATGAGCGAGCTCATTGCCCATCACATCACCCAGCAGTAGAATCACGAGAC
CTTCTACCTCTCTTGGGGTGATGAACTGGGATATAGGAGGTCGCTGTCCG
TCACATGGCACGCATGCTTGAGACCCCGCCATGCATGATCAGGAAGCTGG
ACCTATCCAAGAGCTCTATCGGGGACGAAGGAGCATCGTTACTCAGGGCG
GCCTTGCACCGCCACCCTACGCTACGTGTACTCAACCTCTCCTGCAACAG
GATCGGGATAACGGGGGGTGAGGTGCTGGCAGCACTCCTGATCGAGGGGT
CAGACCTGGCGGAGCTCAGTCTCAGGGCTAACGCGATTGGAGACGATGGT
GCGAGGGCATTCAAGGTGGTGCTTCAGAATAGCAAGACGCTGAGAATGTG
AGTGCAATGATCAGGCACAGTGTGTGTATTTTAAGTACCTGGTCCAATGG
GTAGGGAGACAGCATTGAGCACCTCGGTTGTGTCAGAACATGGACATGAA
CACGCAACCAGACACTCCGCGGAACGTGTGCTTACGGAGGCATAGAGTAC
GAAATAATTTGATTGTCAAGGAAAAAAGGTGCTCTCTTTCCTCTACCAGA
GACGTTACAAACGTCAAATTGTGCGCCCTGTCCACTGCACGTGGGGTGGG
ATGTAGTGCTCCCTGCTGCATACTCCAAGTACAAAACTACACAGTTACGC
GGCAAGCAGGGTGACAGTACACGCACTGCAATTAAAACATCTGCGTACAA
TCATCATCGCAGAAAGGGAGTATTTCCAATTCAATGGAAAGGTATTGCCT
ACATCCTACATCATATTCCCACATGCTCTGTCCTATACCCGTAAGTAGGA
AGCATCTATTGACTGTTCACATTCAAATTTCTTGTATCGTGGAGACCGTT
CATGCCGCCTATGTTTGTATCTGCATCACCGCACCCCTTTTCCGAAACCG
CTCAATACTTCAACTGCGGATGTGAACAGGCTCGACCTCCGCAACAACGG
CATCGGTGACAGTGGACTGGAGGCACTGTCAGAAGGGATAGAGTGGAGTG
CCTCTCTAGAACGCCTCCTCGTGTGGGGAAACCTCTTCGGCCAAAGCTCT
CTTCAAAAGTTTGCATCCCTAGAGAGCGGCCGCTTTGCACTGGTTGGGGT
TTCCACAGACGTGAAAGTGTTTGTGGTGGATGGGGTGTACCAGGCGGCAG
AGAAGCAGGCATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig877:2184..6297+

>mRNA_C-tenellus_contig877.1.1 ID=mRNA_C-tenellus_contig877.1.1|Name=mRNA_C-tenellus_contig877.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1068bp|location=Sequence derived from alignment at C-tenellus_contig877:2184..6297+ (Choristocarpus tenellus KU2346)
ATGGCCCAGGCAGACGGTCAAAGGGAGCTAGAGCAAATCCACCTGAAAGG
GTTAAGGGTTAATGATGAAGACGCCGAAGCCTTATCGAACGCCCTAATAT
CGAGCGGCGCGGTAGTCCGAAGCATCTCCCTGGCAAGCAATGATATCGGA
GATCGTGGTGCGGCAGCGTTGGCTCGCCTACTGCAAGATGAGCCAGGATA
CCGTTGCATGTTGTCCTCGTTGGATCTCCGCGGGAATGATATTGGTGGCA
AGGGCTGCGAGCTTCTCTCAAAGCGTATTCGGAACAACACCACTTTGACA
ACCTTGGATCTAAGCTCAAATCCACTCGGACCTAGTGGGGGCCTTCATCT
TGCTGAGGCAAGTTGGTTGATGCTCAAGGAGAACTTCACTTTGGAAGCAC
TGGTGGTGAACAATACAGAGATGACAGAGACAGGTTTCATTGCTCTCATC
TCTATCCTGAGGGAGGGAAACAACACCGTCAGAGAGCTAAGCATTGGGGG
GCAGCTCTTGCATTCCCGTGAGGAGGTCGCTGTCCGTCACATGGCACGCA
TGCTTGAGACCCCGCCATGCATGATCAGGAAGCTGGACCTATCCAAGAGC
TCTATCGGGGACGAAGGAGCATCGTTACTCAGGGCGGCCTTGCACCGCCA
CCCTACGCTACGTGTACTCAACCTCTCCTGCAACAGGATCGGGATAACGG
GGGGTGAGGTGCTGGCAGCACTCCTGATCGAGGGGTCAGACCTGGCGGAG
CTCAGTCTCAGGGCTAACGCGATTGGAGACGATGGTGCGAGGGCATTCAA
GGTGGTGCTTCAGAATAGCAAGACGCTGAGAATGCTCGACCTCCGCAACA
ACGGCATCGGTGACAGTGGACTGGAGGCACTGTCAGAAGGGATAGAGTGG
AGTGCCTCTCTAGAACGCCTCCTCGTGTGGGGAAACCTCTTCGGCCAAAG
CTCTCTTCAAAAGTTTGCATCCCTAGAGAGCGGCCGCTTTGCACTGGTTG
GGGTTTCCACAGACGTGAAAGTGTTTGTGGTGGATGGGGTGTACCAGGCG
GCAGAGAAGCAGGCATGA
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