mRNA_C-tenellus_contig8593.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8593.4.1
Unique NamemRNA_C-tenellus_contig8593.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.770e-24
Identity = 59/193 (30.57%), Postives = 103/193 (53.37%), Query Frame = 1
Query:    1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576
            V+  D  NAFN+ + +A +    +++P L+ YI++ Y       ++ +D G  + +  +SG QQGD +GP L+C +    + +V+A +   G+S ++Y+D+  +  ++I    I     L  +L  VGI +N  K+ A  P GH   P+E  LL  AG+ +A    G   +G P+GTD +++    +VI   G
Sbjct:  146 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 336          
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.470e-23
Identity = 56/193 (29.02%), Postives = 101/193 (52.33%), Query Frame = 1
Query:    1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576
            V+  D  NAFN+ + +A +    +++P L+ YI++ Y       ++ +D G  + +  + G QQGD +GP L+C +    + +++A +   G+  ++Y+D+  +  ++I    I     L  +L  VGI +N  K+ A  P GH   P+E  LL  AG+ +A    G   +G P+GTD +++    +VI   G
Sbjct:  229 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 419          
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.960e-23
Identity = 57/193 (29.53%), Postives = 102/193 (52.85%), Query Frame = 1
Query:    1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576
            V+  D  NAFN+ + +A +    +++P L+ YI++ Y       ++ +D G  + +  +SG QQGD +GP L+C +    + +++A +   G+  ++Y+D+  +  ++I    I     L  +L  VGI +N  K+ A  P GH   P+E  LL  AG+ +A    G   +G P+GTD +++    +VI   G
Sbjct:  507 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 697          
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 6.780e-23
Identity = 56/193 (29.02%), Postives = 102/193 (52.85%), Query Frame = 1
Query:    1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576
            V+  D  NAFN+ + +A +    +++P L+ YI++ Y       ++ +D G  + +  +SG QQGD +GP L+C +    + +++A +   G+  ++Y+D+  +  ++I    I     +  +L  VGI +N  K+ A  P GH   P+E  LL  AG+ +A    G   +G P+GTD +++    +VI   G
Sbjct:   54 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 244          
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 9.460e-23
Identity = 57/193 (29.53%), Postives = 101/193 (52.33%), Query Frame = 1
Query:    1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576
            V+  D  NAFN+ + +A +    +++P L+ YI++ Y       ++ +D G  + +  +SG QQGD +GP L+C +    + +++A +   G+  ++Y+D+  +  +DI    I     L  +L  VGI +N  K+ A  P GH   P+E   L  AG+ +A    G   +G P+GTD +++    +VI   G
Sbjct:  506 VVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 696          
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 9.490e-23
Identity = 57/193 (29.53%), Postives = 102/193 (52.85%), Query Frame = 1
Query:    1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576
            V+  D  NAFN+ + +A +    +++P L+ YI++ Y       ++ +D G  + +  +SG QQGD +GP L+C +    + +++A +   G+S ++Y+D+  +  ++I    I     L  +L  VGI +N  K+ A  P GH   P+E  LL  AG+ +A    G   +G P+ TD +++    +VI   G
Sbjct:  533 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIETDAYVEDIAMKVITEGG 723          
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 3.320e-22
Identity = 56/193 (29.02%), Postives = 101/193 (52.33%), Query Frame = 1
Query:    1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576
            V+  D  NAFN+ + +A +    +++P L+ YI++ Y       ++ +D G  + +  +SG QQGD +GP L+C +    + +++A +   G+  ++Y+D+  +  ++I    I     L  +L  VGI +N  K+ A  P G    P+E  LL  AG+ +A    G   +G P+GTD +++    +VI   G
Sbjct:  528 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAIKVIAEGG 718          
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 7.840e-22
Identity = 57/194 (29.38%), Postives = 102/194 (52.58%), Query Frame = 1
Query:    1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTL-ISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576
            V+  D  NAFN+ + +A +    +++P L+ YI++ Y       ++ +D G  + +  +SG QQGD +GP L+C      + +++A +   G+  ++Y+D+ + +  ++I    I     L  +L  VGI +N  K+ A  P GH   P+E  LL  AG+ +A    G   +G P+GTD +++    +VI   G
Sbjct:  138 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 329          
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.690e-21
Identity = 52/182 (28.57%), Postives = 97/182 (53.30%), Query Frame = 1
Query:    1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQ 543
            V+  D  +AFN+ + +  +    +++P +L YI++ Y       ++ +D G  + +  +SG QQGD +GP L+C +    + +++A++   G+  ++Y+D+  +   +I    I     L  +L  VGI +N  K+ A  P GH   P+E  LL  AG+ +A    G   +G P+GTD +++
Sbjct:  131 VVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVE 310          
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 5.040e-17
Identity = 46/159 (28.93%), Postives = 85/159 (53.46%), Query Frame = 1
Query:   70 ETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQ 543
            +++P L+ YI++ Y       ++ +D G  + +  +SG QQGD +GP L+C +    + +++A +   G+  ++Y+D+  +  ++I    I     L  +L  VGI +N  K+ A  P GH   P+   LL  AG+ +A    G   +G P+GTD +++
Sbjct:    6 KSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAGRRLLGDAGLPIAEE--GITVVGVPIGTDVYVE 162          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLG6_9PHAE1.770e-2430.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KR59_9PHAE1.470e-2329.02Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KMQ2_9PHAE2.960e-2329.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KYJ9_9PHAE6.780e-2329.02Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KKQ2_9PHAE9.460e-2329.53Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KJC0_9PHAE9.490e-2329.53Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JI32_9PHAE3.320e-2229.02Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LL14_9PHAE7.840e-2229.38Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K0V7_9PHAE3.690e-2128.57Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHZ7_9PHAE5.040e-1728.93Reverse transcriptase domain-containing protein (F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8593contigC-tenellus_contig8593:4685..5266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog400682.PAC_15719669
PFAMsRVT_1,zf-RVT
Model size582
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.53e-18
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39QPF@33154|Opisthokonta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size582
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790113.313896-CDS-C-tenellus_contig8593:4684..52661680790113.313896-CDS-C-tenellus_contig8593:4684..5266Choristocarpus tenellus KU2346CDSC-tenellus_contig8593 4685..5266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8593.4.1prot_C-tenellus_contig8593.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8593 4685..5266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8593.4.1

>prot_C-tenellus_contig8593.4.1 ID=prot_C-tenellus_contig8593.4.1|Name=mRNA_C-tenellus_contig8593.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=194bp
VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNTRNLLFPLDEG
GTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDN
TLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSEL
ELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSGT*
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mRNA from alignment at C-tenellus_contig8593:4685..5266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8593.4.1 ID=mRNA_C-tenellus_contig8593.4.1|Name=mRNA_C-tenellus_contig8593.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=582bp|location=Sequence derived from alignment at C-tenellus_contig8593:4685..5266+ (Choristocarpus tenellus KU2346)
GTCATCACTTTGGACGGAAGGAATGCTTTCAACAGCATACGTTGCTCAGC TTTCATCCAGAACCTCCCAGAGACTATACCAGGACTCCTACCTTATATTT CTAAGGTATATGGGAACACCCGCAATCTTCTTTTCCCCCTGGATGAGGGA GGGACGAAGATCCTACCATCAAGATCTGGGGCCCAACAGGGAGACCCACT AGGCCCCCTCTTATATTGCATGGTCACACACAGGGCCTTGCAACAGGTCC AAGCGGTTTTTGGACCCCAAGGGATATCCTCCCGAAGCTACCTGGACAAC ACATTGATATCAGCTAGAGATATAGGCCCTAACACTATAGCTGCTTTCGA GCAGTTAAAAACTGACCTCCATGAGGTAGGCATTGACCTCAATATGGACA AGACCTTCGCCGCATCTCCCCAGGGCCACCAACCCATACCCTCGGAACTG GAGCTTCTCCCTGCAGCAGGAATCAACCTAGCCCCGAACCCCAGTGGTTT TGTCACTCTAGGGGCTCCGGTGGGAACAGATGGTTTTATTCAAGCTCACA TGGCTGAGGTGATCGAGAACTCAGGGACATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig8593:4685..5266+

>mRNA_C-tenellus_contig8593.4.1 ID=mRNA_C-tenellus_contig8593.4.1|Name=mRNA_C-tenellus_contig8593.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=582bp|location=Sequence derived from alignment at C-tenellus_contig8593:4685..5266+ (Choristocarpus tenellus KU2346)
GTCATCACTTTGGACGGAAGGAATGCTTTCAACAGCATACGTTGCTCAGC
TTTCATCCAGAACCTCCCAGAGACTATACCAGGACTCCTACCTTATATTT
CTAAGGTATATGGGAACACCCGCAATCTTCTTTTCCCCCTGGATGAGGGA
GGGACGAAGATCCTACCATCAAGATCTGGGGCCCAACAGGGAGACCCACT
AGGCCCCCTCTTATATTGCATGGTCACACACAGGGCCTTGCAACAGGTCC
AAGCGGTTTTTGGACCCCAAGGGATATCCTCCCGAAGCTACCTGGACAAC
ACATTGATATCAGCTAGAGATATAGGCCCTAACACTATAGCTGCTTTCGA
GCAGTTAAAAACTGACCTCCATGAGGTAGGCATTGACCTCAATATGGACA
AGACCTTCGCCGCATCTCCCCAGGGCCACCAACCCATACCCTCGGAACTG
GAGCTTCTCCCTGCAGCAGGAATCAACCTAGCCCCGAACCCCAGTGGTTT
TGTCACTCTAGGGGCTCCGGTGGGAACAGATGGTTTTATTCAAGCTCACA
TGGCTGAGGTGATCGAGAACTCAGGGACATGA
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