mRNA_C-tenellus_contig8593.4.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE) HSP 1 Score: 110 bits (274), Expect = 1.770e-24 Identity = 59/193 (30.57%), Postives = 103/193 (53.37%), Query Frame = 1 Query: 1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576 V+ D NAFN+ + +A + +++P L+ YI++ Y ++ +D G + + +SG QQGD +GP L+C + + +V+A + G+S ++Y+D+ + ++I I L +L VGI +N K+ A P GH P+E LL AG+ +A G +G P+GTD +++ +VI G Sbjct: 146 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVSKVRAKYDHLGVSLKAYVDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 336
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE) HSP 1 Score: 106 bits (264), Expect = 1.470e-23 Identity = 56/193 (29.02%), Postives = 101/193 (52.33%), Query Frame = 1 Query: 1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576 V+ D NAFN+ + +A + +++P L+ YI++ Y ++ +D G + + + G QQGD +GP L+C + + +++A + G+ ++Y+D+ + ++I I L +L VGI +N K+ A P GH P+E LL AG+ +A G +G P+GTD +++ +VI G Sbjct: 229 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGARRTIECKGGVQQGDGMGPPLFCFILVPIILKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 419
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 106 bits (265), Expect = 2.960e-23 Identity = 57/193 (29.53%), Postives = 102/193 (52.85%), Query Frame = 1 Query: 1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576 V+ D NAFN+ + +A + +++P L+ YI++ Y ++ +D G + + +SG QQGD +GP L+C + + +++A + G+ ++Y+D+ + ++I I L +L VGI +N K+ A P GH P+E LL AG+ +A G +G P+GTD +++ +VI G Sbjct: 507 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYAMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 697
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5KYJ9_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYJ9_9PHAE) HSP 1 Score: 105 bits (262), Expect = 6.780e-23 Identity = 56/193 (29.02%), Postives = 102/193 (52.85%), Query Frame = 1 Query: 1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576 V+ D NAFN+ + +A + +++P L+ YI++ Y ++ +D G + + +SG QQGD +GP L+C + + +++A + G+ ++Y+D+ + ++I I + +L VGI +N K+ A P GH P+E LL AG+ +A G +G P+GTD +++ +VI G Sbjct: 54 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDVVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 244
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5KKQ2_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKQ2_9PHAE) HSP 1 Score: 105 bits (261), Expect = 9.460e-23 Identity = 57/193 (29.53%), Postives = 101/193 (52.33%), Query Frame = 1 Query: 1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576 V+ D NAFN+ + +A + +++P L+ YI++ Y ++ +D G + + +SG QQGD +GP L+C + + +++A + G+ ++Y+D+ + +DI I L +L VGI +N K+ A P GH P+E L AG+ +A G +G P+GTD +++ +VI G Sbjct: 506 VVQTDCSNAFNTGKRTAIMAQASKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKDITAENIQVTPDLVDELEAVGIIVNRGKSSALPPPGHDVTPTERRPLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 696
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5KJC0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJC0_9PHAE) HSP 1 Score: 105 bits (261), Expect = 9.490e-23 Identity = 57/193 (29.53%), Postives = 102/193 (52.85%), Query Frame = 1 Query: 1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576 V+ D NAFN+ + +A + +++P L+ YI++ Y ++ +D G + + +SG QQGD +GP L+C + + +++A + G+S ++Y+D+ + ++I I L +L VGI +N K+ A P GH P+E LL AG+ +A G +G P+ TD +++ +VI G Sbjct: 533 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVSLKAYMDDISLHFKNITAEFIQVIPDLVNELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIETDAYVEDIAMKVITEGG 723
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5JI32_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI32_9PHAE) HSP 1 Score: 103 bits (257), Expect = 3.320e-22 Identity = 56/193 (29.02%), Postives = 101/193 (52.33%), Query Frame = 1 Query: 1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576 V+ D NAFN+ + +A + +++P L+ YI++ Y ++ +D G + + +SG QQGD +GP L+C + + +++A + G+ ++Y+D+ + ++I I L +L VGI +N K+ A P G P+E LL AG+ +A G +G P+GTD +++ +VI G Sbjct: 528 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALHPPGRDVAPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAIKVIAEGG 718
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5LL14_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL14_9PHAE) HSP 1 Score: 102 bits (254), Expect = 7.840e-22 Identity = 57/194 (29.38%), Postives = 102/194 (52.58%), Query Frame = 1 Query: 1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTL-ISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQAHMAEVIENSG 576 V+ D NAFN+ + +A + +++P L+ YI++ Y ++ +D G + + +SG QQGD +GP L+C + +++A + G+ ++Y+D+ + + ++I I L +L VGI +N K+ A P GH P+E LL AG+ +A G +G P+GTD +++ +VI G Sbjct: 138 VVQTDCSNAFNTGKRTAIMAQAAKSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFTLVPIVLKLRAKYDNLGVRLKAYMDDIISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVEDIAMKVITEGG 329
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5K0V7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V7_9PHAE) HSP 1 Score: 100 bits (248), Expect = 3.690e-21 Identity = 52/182 (28.57%), Postives = 97/182 (53.30%), Query Frame = 1 Query: 1 VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQ 543 V+ D +AFN+ + + + +++P +L YI++ Y ++ +D G + + +SG QQGD +GP L+C + + +++A++ G+ ++Y+D+ + +I I L +L VGI +N K+ A P GH P+E LL AG+ +A G +G P+GTD +++ Sbjct: 131 VVQTDCSDAFNTGKRTVIMAQAAKSVPDVLGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAMYDHLGVCLKAYMDDISLHFNNITAENIQLIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAERRLLGDAGLPIAEE--GITVVGVPIGTDAYVE 310
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 5.040e-17 Identity = 46/159 (28.93%), Postives = 85/159 (53.46%), Query Frame = 1 Query: 70 ETIPGLLPYISKVYGNT-RNLLFPLDEGGTKILPSRSGAQQGDPLGPLLYCMVTHRALQQVQAVFGPQGISSRSYLDNTLISARDIGPNTIAAFEQLKTDLHEVGIDLNMDKTFAASPQGHQPIPSELELLPAAGINLAPNPSGFVTLGAPVGTDGFIQ 543 +++P L+ YI++ Y ++ +D G + + +SG QQGD +GP L+C + + +++A + G+ ++Y+D+ + ++I I L +L VGI +N K+ A P GH P+ LL AG+ +A G +G P+GTD +++ Sbjct: 6 KSVPDLVGYIARCYDEIPAKAIYTMDSGERRTIECKSGVQQGDGMGPPLFCFILVPIVLKLRAKYDHLGVCLKAYMDDISLHFKNITAENIQVIPDLVDELEAVGIIVNRGKSSALPPPGHDVTPAGRRLLGDAGLPIAEE--GITVVGVPIGTDVYVE 162 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8593.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig8593.4.1 >prot_C-tenellus_contig8593.4.1 ID=prot_C-tenellus_contig8593.4.1|Name=mRNA_C-tenellus_contig8593.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=194bp VITLDGRNAFNSIRCSAFIQNLPETIPGLLPYISKVYGNTRNLLFPLDEGback to top mRNA from alignment at C-tenellus_contig8593:4685..5266+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig8593.4.1 ID=mRNA_C-tenellus_contig8593.4.1|Name=mRNA_C-tenellus_contig8593.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=582bp|location=Sequence derived from alignment at C-tenellus_contig8593:4685..5266+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig8593:4685..5266+ >mRNA_C-tenellus_contig8593.4.1 ID=mRNA_C-tenellus_contig8593.4.1|Name=mRNA_C-tenellus_contig8593.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=582bp|location=Sequence derived from alignment at C-tenellus_contig8593:4685..5266+ (Choristocarpus tenellus KU2346)back to top |