mRNA_C-tenellus_contig8581.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-tenellus_contig8581.1.1
Unique Name	mRNA_C-tenellus_contig8581.1.1
Type	mRNA
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)

Homology

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BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Match: A0A803MLB8_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MLB8_CHEQI)

HSP 1 Score: 89.4 bits (220), Expect = 5.660e-20
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1

Query:   19 L*VGYGDSDWDTDSQTHRSVTGYLLLFKGSPIAWCSKLQGAVTLFSSETEWTAMAYGTRHCIFLRGILGEIGVL*DQTPWFCDNRGAIQVGSITVFNGRT*HLD 330
            L  GY DSD+  D  T RSVTGY+    GS ++W S LQ +VTL ++E E+ A+    +  I+L+G++GE+G+  D    +CD+  AI +    V + RT H+D
Sbjct:   36 LVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGELGIAQDFATVYCDSLSAICLAKDQVHHDRTKHID 139

[Close]

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Match: A0A803LCA3_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCA3_CHEQI)

HSP 1 Score: 89.4 bits (220), Expect = 1.400e-19
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1

Query:   19 L*VGYGDSDWDTDSQTHRSVTGYLLLFKGSPIAWCSKLQGAVTLFSSETEWTAMAYGTRHCIFLRGILGEIGVL*DQTPWFCDNRGAIQVGSITVFNGRT*HLD 330
            L  GY DSD+  D  T RSVTGY+    GS ++W S LQ +VTL ++E E+ A+    +  I+L+G++GE+G+  D    +CD+  AI +    V + RT H+D
Sbjct:   36 LVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGELGIAQDFATVYCDSLSAICLAKDQVHHDRTKHID 139

[Close]

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Match: A0A803MVT2_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MVT2_CHEQI)

HSP 1 Score: 89.7 bits (221), Expect = 2.860e-19
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 1

Query:   19 L*VGYGDSDWDTDSQTHRSVTGYLLLFKGSPIAWCSKLQGAVTLFSSETEWTAMAYGTRHCIFLRGILGEIGVL*DQTPWFCDNRGAIQVGSITVFNGRT*HLDKKL 339
            L  GY DSD+  D  T RSVTGY+    GS ++W S LQ +VTL ++E E+ A+    +  I+L+G++GE+G+  D    +CD+  AI +    V + RT H+D ++
Sbjct:   36 LVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGELGIAQDFATVYCDSLSAICLAKDQVHHDRTKHIDVRV 142

[Close]

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Match: A0A803MPL7_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MPL7_CHEQI)

HSP 1 Score: 89.4 bits (220), Expect = 5.810e-19
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1

Query:   19 L*VGYGDSDWDTDSQTHRSVTGYLLLFKGSPIAWCSKLQGAVTLFSSETEWTAMAYGTRHCIFLRGILGEIGVL*DQTPWFCDNRGAIQVGSITVFNGRT*HLD 330
            L  GY DSD+  D  T RSVTGY+    GS ++W S LQ +VTL ++E E+ A+    +  I+L+G++GE+G+  D    +CD+  AI +    V + RT H+D
Sbjct:   18 LVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGELGIAQDFATVYCDSLSAICLAKDQVHHDRTKHID 121

[Close]

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Match: A0A803MC70_CHEQI (BHLH domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MC70_CHEQI)

HSP 1 Score: 89.4 bits (220), Expect = 6.160e-19
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1

Query:   19 L*VGYGDSDWDTDSQTHRSVTGYLLLFKGSPIAWCSKLQGAVTLFSSETEWTAMAYGTRHCIFLRGILGEIGVL*DQTPWFCDNRGAIQVGSITVFNGRT*HLD 330
            L  GY DSD+  D  T RSVTGY+    GS ++W S LQ +VTL ++E E+ A+    +  I+L+G++GE+G+  D    +CD+  AI +    V + RT H+D
Sbjct:   36 LVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGELGIAQDFATVYCDSLSAICLAKDQVHHDRTKHID 139

[Close]

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Match: A0A803NB01_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803NB01_CHEQI)

HSP 1 Score: 89.4 bits (220), Expect = 8.470e-19
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1

Query:   19 L*VGYGDSDWDTDSQTHRSVTGYLLLFKGSPIAWCSKLQGAVTLFSSETEWTAMAYGTRHCIFLRGILGEIGVL*DQTPWFCDNRGAIQVGSITVFNGRT*HLD 330
            L  GY DSD+  D  T RSVTGY+    GS ++W S LQ +VTL ++E E+ A+    +  I+L+G++GE+G+  D    +CD+  AI +    V + RT H+D
Sbjct:   36 LVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGELGIAQDFATVYCDSLSAICLAKDQVHHDRTKHID 139

[Close]

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Match: A0A803M9V7_CHEQI (GTPase Der n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803M9V7_CHEQI)

HSP 1 Score: 90.1 bits (222), Expect = 1.050e-18
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1

Query:   19 L*VGYGDSDWDTDSQTHRSVTGYLLLFKGSPIAWCSKLQGAVTLFSSETEWTAMAYGTRHCIFLRGILGEIGVL*DQTPWFCDNRGAIQVGSITVFNGRT*HLDKKL 339
            L  GY DSD+  D  T RSVTGY+    GS ++W S LQ +VTL ++E E+ A+    +  I+L+G++GE+G+  D    +CD+  AI +    V + RT H+D  L
Sbjct:   36 LVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGELGIAQDFATVYCDSLSAICLAKDQVHHDRTKHIDVSL 142

[Close]

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Match: A0A803M603_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803M603_CHEQI)

HSP 1 Score: 89.4 bits (220), Expect = 1.560e-18
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1

Query:   19 L*VGYGDSDWDTDSQTHRSVTGYLLLFKGSPIAWCSKLQGAVTLFSSETEWTAMAYGTRHCIFLRGILGEIGVL*DQTPWFCDNRGAIQVGSITVFNGRT*HLD 330
            L  GY DSD+  D  T RSVTGY+    GS ++W S LQ +VTL ++E E+ A+    +  I+L+G++GE+G+  D    +CD+  AI +    V + RT H+D
Sbjct:   36 LVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGELGIAQDFATVYCDSLSAICLAKDQVHHDRTKHID 139

[Close]

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Match: A0A803LEX0_CHEQI (CRM domain-containing protein n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LEX0_CHEQI)

HSP 1 Score: 89.4 bits (220), Expect = 1.980e-18
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 1

Query:   19 L*VGYGDSDWDTDSQTHRSVTGYLLLFKGSPIAWCSKLQGAVTLFSSETEWTAMAYGTRHCIFLRGILGEIGVL*DQTPWFCDNRGAIQVGSITVFNGRT*HLD 330
            L  GY DSD+  D  T RSVTGY+    GS ++W S LQ +VTL ++E E+ A+    +  I+L+G++GE+G+  D    +CD+  AI +    V + RT H+D
Sbjct:   36 LVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGELGIAQDFATVYCDSLSAICLAKDQVHHDRTKHID 139

[Close]

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Match: A0A803LFY2_CHEQI (DLH domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LFY2_CHEQI)

HSP 1 Score: 88.2 bits (217), Expect = 3.060e-18
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 1

Query:   19 L*VGYGDSDWDTDSQTHRSVTGYLLLFKGSPIAWCSKLQGAVTLFSSETEWTAMAYGTRHCIFLRGILGEIGVL*DQTPWFCDNRGAIQVGSITVFNGRT*HLD 330
            L  GY DSD+  D  T RSVTGY+    GS ++W S LQ +VTL ++E E+ A+    +  I+L+G++G++G+  D    +CD+  AI +    V + RT H+D
Sbjct:   36 LVTGYSDSDYAADVDTRRSVTGYVFTLGGSVVSWKSTLQSSVTLSTTEAEYMALTSAAKESIWLKGLVGDLGIAQDFATVYCDSLSAICLAKDQVHHDRTKHID 139

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig8581.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A803MLB8_CHEQI	5.660e-20	40.38	Uncharacterized protein n=1 Tax=Chenopodium quinoa...	[more]
A0A803LCA3_CHEQI	1.400e-19	40.38	Uncharacterized protein n=1 Tax=Chenopodium quinoa...	[more]
A0A803MVT2_CHEQI	2.860e-19	39.25	Uncharacterized protein n=1 Tax=Chenopodium quinoa...	[more]
A0A803MPL7_CHEQI	5.810e-19	40.38	Uncharacterized protein n=1 Tax=Chenopodium quinoa...	[more]
A0A803MC70_CHEQI	6.160e-19	40.38	BHLH domain-containing protein n=1 Tax=Chenopodium...	[more]
A0A803NB01_CHEQI	8.470e-19	40.38	Uncharacterized protein n=1 Tax=Chenopodium quinoa...	[more]
A0A803M9V7_CHEQI	1.050e-18	40.19	GTPase Der n=1 Tax=Chenopodium quinoa TaxID=63459 ...	[more]
A0A803M603_CHEQI	1.560e-18	40.38	Uncharacterized protein n=1 Tax=Chenopodium quinoa...	[more]
A0A803LEX0_CHEQI	1.980e-18	40.38	CRM domain-containing protein n=2 Tax=Chenopodium ...	[more]
A0A803LFY2_CHEQI	3.060e-18	39.42	DLH domain-containing protein n=1 Tax=Chenopodium ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig8581	contig	C-tenellus_contig8581:1668..2007 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	340
Hectar predicted targeting category	other localisation
Exons	1
Cds size	309

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790112.772633-UTR-C-tenellus_contig8581:1667..1698	1680790112.772633-UTR-C-tenellus_contig8581:1667..1698	Choristocarpus tenellus KU2346	UTR	C-tenellus_contig8581 1668..1698 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790112.7845159-CDS-C-tenellus_contig8581:1698..2007	1680790112.7845159-CDS-C-tenellus_contig8581:1698..2007	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig8581 1699..2007 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig8581.1.1	prot_C-tenellus_contig8581.1.1	Choristocarpus tenellus KU2346	polypeptide	C-tenellus_contig8581 1699..2007 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-tenellus_contig8581:1668..2007+
coding sequence from alignment at C-tenellus_contig8581:1668..2007+

protein sequence of mRNA_C-tenellus_contig8581.1.1

>prot_C-tenellus_contig8581.1.1 ID=prot_C-tenellus_contig8581.1.1|Name=mRNA_C-tenellus_contig8581.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=103bp
MGIPTGTPTPKHTGASQATYYCSKDRRSPGAPSFKAPSPSSARRQSGRQW
HTARATAFSFEAFWGRSAYYRTRLPGSVTTVVLSRWAASQFSTGERSTWT
RS*

mRNA from alignment at C-tenellus_contig8581:1668..2007+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-tenellus_contig8581.1.1 ID=mRNA_C-tenellus_contig8581.1.1|Name=mRNA_C-tenellus_contig8581.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=340bp|location=Sequence derived from alignment at C-tenellus_contig8581:1668..2007+ (Choristocarpus tenellus KU2346)
AACGGAGGAGTCGGAGAGCTCTAGGTGGGGTATGGGGATTCCGACTGGGA
CACCGACTCCCAAACACACAGGAGCGTCACAGGCTACCTACTATTGTTCA
AAGGATCGCCGATCGCCTGGTGCTCCAAGCTTCAAGGCGCCGTCACCCTC
TTCAGCTCGGAGACAGAGTGGACGGCAATGGCATACGGCACGCGCCACTG
CATTTTCCTTCGAGGCATTCTGGGGGAGATCGGCGTACTATAGGACCAGA
CTCCCTGGTTCTGTGACAACCGTGGTGCTATCCAGGTGGGCAGCATCACA
GTTTTCAACGGGAGAACGTAGCACTTGGACAAGAAGCTGA

Coding sequence (CDS) from alignment at C-tenellus_contig8581:1668..2007+

>mRNA_C-tenellus_contig8581.1.1 ID=mRNA_C-tenellus_contig8581.1.1|Name=mRNA_C-tenellus_contig8581.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=309bp|location=Sequence derived from alignment at C-tenellus_contig8581:1668..2007+ (Choristocarpus tenellus KU2346)
ATGGGGATTCCGACTGGGACACCGACTCCCAAACACACAGGAGCGTCACA
GGCTACCTACTATTGTTCAAAGGATCGCCGATCGCCTGGTGCTCCAAGCT
TCAAGGCGCCGTCACCCTCTTCAGCTCGGAGACAGAGTGGACGGCAATGG
CATACGGCACGCGCCACTGCATTTTCCTTCGAGGCATTCTGGGGGAGATC
GGCGTACTATAGGACCAGACTCCCTGGTTCTGTGACAACCGTGGTGCTAT
CCAGGTGGGCAGCATCACAGTTTTCAACGGGAGAACGTAGCACTTGGACA
AGAAGCTGA