mRNA_C-tenellus_contig8481.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8481.1.1
Unique NamemRNA_C-tenellus_contig8481.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Match: A0A6H5L5M1_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M1_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 4.650e-88
Identity = 148/272 (54.41%), Postives = 183/272 (67.28%), Query Frame = 3
Query:  249 PSVPFLAWVERTVKERAEGDT---FGEWFDDKGDVVESRTFAGLWAEAGRIAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGVVAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVLSEARKLWPLVPYHCLASADVPSTGARGGLLFSAAKMVLGENDPSTSTAVATNTYDEQTLVAEDIAFLQFTSGSTADPKGVMITFGNLMHNVHLVLTGNTKTMEA---FCKGRTEDLPQRFVGFSWLPQYHDLG 1046
            PSV  L W E TV+ R+ G+    F  WFD +G+V ++ TFA +WAEAGRIAHELR S GL KGDR +LCYGFGL FFAAFLGCLRAGV+AVP+YPPSP TLSKSL K+Q  V++C P++IL+S DVN LRLAS+LN +S AR+LWP +PY    S+ V S G          K + G      S       +DE++L   D+AFLQFTSGST++PKGVM+TFGNL HN   +   + K+ ++      GR E    R  GFSWLPQYHDLG
Sbjct:   11 PSVELLRWAEATVRGRSGGENEVVFARWFDAQGEVSQTHTFASVWAEAGRIAHELRVSWGLGKGDRAILCYGFGLDFFAAFLGCLRAGVLAVPVYPPSPLTLSKSLTKLQSIVEACDPKVILVSGDVNRLRLASKLNFVSSARRLWPDLPYKVARSSGVSSGGGIS-------KWLGGAGGGGES-------FDEESLGEGDVAFLQFTSGSTSEPKGVMVTFGNLEHNARFISRMSEKSFKSRGFSFSGREEVGGVR--GFSWLPQYHDLG 266          
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Match: A0A6H5KNL6_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNL6_9PHAE)

HSP 1 Score: 230 bits (587), Expect = 5.510e-70
Identity = 122/267 (45.69%), Postives = 164/267 (61.42%), Query Frame = 3
Query:  249 PSVPFLAWVERTVKERAEGDTFGEWFDDKGDVVESRTFAGLWAEAGRIAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGVVAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVLSEARKLWPLVPYHC-LASADVPSTGARGGLLFSAAKMVLGENDPSTSTAVATNTYDEQTLVAEDIAFLQFTSGSTADPKGVMITFGNLMHNVHLVLTGNTKTMEAFCKGRTEDLPQRFVGFSWLPQYHDLG 1046
            PS   +  +   + E      F  W+ DKG V  +RTF G+WA +G IA+ LR + GL KGDRVVL + FGL FF  FLGCLRAGVVAVP+YPP+P TL KSL K+ + V+SC+P++I L   VN LRLAS++  ++     WP +PYHC +   + PS         S+ ++++G    S +      ++D+ ++ A D+AFLQFTSGST+DPKGVMITFGNL HN+  VL  +   ME   +G       R   FSWLP  HD+G
Sbjct:    7 PSGILIRKIHGVIAEMPRDKVFARWYGDKGHVESTRTFHGIWAASGEIAYLLRSTLGLNKGDRVVLAFNFGLRFFVVFLGCLRAGVVAVPVYPPNPATLQKSLGKLSLIVESCEPKMIFLCPLVNKLRLASKVRAVATGNSGWPDLPYHCPMVKEETPSKANTSS--SSSFRLLMGGGRTSNADE-RRKSFDDPSIKAADVAFLQFTSGSTSDPKGVMITFGNLDHNISSVLLSSN--MEIAARGGPPPQDGR-AWFSWLPTSHDMG 267          
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Match: D7FRT1_ECTSI (Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT1_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 1.510e-67
Identity = 121/270 (44.81%), Postives = 169/270 (62.59%), Query Frame = 3
Query:  237 METGPSVPFLAWVERTVKERAEGDTFGEWFDDKGDVVESRTFAGLWAEAGRIAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGVVAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVLSEARKLWPLVPYHCLASADVPSTGARGGLLFSAAKMVLGENDPSTSTAVATNTYDEQTLVAEDIAFLQFTSGSTADPKGVMITFGNLMHNVHLVLTGNTKTMEAFCKGRTEDLPQRFVGFSWLPQYHDLG 1046
            + T  S  FL  + R++ +  E   FG W++ KG V  +RTF G+W  +G IAH LR   GL KGDRVVL + FGL FFA FLGCLRAG++AVP+YPP+P TL +SL K+Q+ VDSC P+++L+   VN LRLAS+L  ++  +  WP +PYHC    DV       G + SA          S        ++D+ T+  +D+AFLQFTSGST+DPKGVM+T+GNL HN+ +++  N+   +   +G   D  + +  FSWLP +HD+G
Sbjct:  443 VSTRSSGTFLQAIARSINKIPEDQVFGRWYNSKGQVESTRTFHGVWVASGEIAHLLRVEWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKRSLKKLQLIVDSCAPKMVLVCPLVNKLRLASKLRAVATGKSGWPDLPYHC---PDVKEENIPTGGMSSATVGWRSGGGKSADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIV--NSSNAQIAERGGVADGQRTW--FSWLPTFHDMG 705          
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Match: D7FH91_ECTSI (AMP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH91_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 2.130e-66
Identity = 124/285 (43.51%), Postives = 176/285 (61.75%), Query Frame = 3
Query:  225 ASSSMETGPSVPFLAWVERTVKERAEGDTFGEWFDDKGDVVESRTFAGLWAEAGRIAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGVVAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVLSEARKLWPLVPYHC--LASADVPSTGARGGLLFSAAKMVLGENDPSTSTAVATN---------TYDEQTLVAEDIAFLQFTSGSTADPKGVMITFGNLMHNVHLVLTGNTKTMEAFCKGRTEDLPQRFVGFSWLPQYHDLG 1046
            A SS +T     FL  + ++V +  E   F  W++ KG V  +RTF G+W  +G IAH LR   GL KGDRVVL + FGL FFA FLGCLRAG++AVP+YPP+P TL KSL  +Q+ V+ C P++IL+   VN LRLA +L V++  +  WP +PYHC  +    +P++G    L ++A   V  ++  S ST   T          ++D+ T+  ED+AFLQFTSGST+DPKGVM+T+GNL HN+  ++  N+   +   +G      + +  FSWLP +HD+G
Sbjct:   20 ARSSQDT-----FLQAIAQSVAKTPEDRVFARWYNRKGQVESTRTFHGVWGASGEIAHLLRVEWGLTKGDRVVLAFNFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLQNLQLIVEGCTPKMILVCPLVNKLRLAWKLRVVATGKSGWPNLPYHCPDVKEETIPTSG----LAYTA---VEWKSRGSKSTDAGTKRPSFQMQRPSFDDPTIKPEDVAFLQFTSGSTSDPKGVMLTYGNLTHNIDAII--NSSNAQIVERGGVPGGNRTW--FSWLPTFHDMG 288          
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Match: A0A6H5JSY1_9PHAE (Carrier domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSY1_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 2.620e-61
Identity = 123/285 (43.16%), Postives = 172/285 (60.35%), Query Frame = 3
Query:  225 ASSSMETGPSVPFLAWVERTVKERAEGDTFGEWFDDKGDVVESRTFAGLWAEAGRIAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGVVAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVLSEARKLWPLVPYHC--LASADVPSTGARGGLLFSAAKMVLGENDPSTSTAVATN---------TYDEQTLVAEDIAFLQFTSGSTADPKGVMITFGNLMHNVHLVLTGNTKTMEAFCKGRTEDLPQRFVGFSWLPQYHDLG 1046
            A SS +T     FL  +  +V +  E   F  W++  G V  +RTF G+W  +G IAH LR   GL KGDRVVL + FGL FFA FLGCLRAG++AVP+YPP+P TL KSL K+Q+ V+ C P +IL+   VN LRLA +L  ++  +  WP +PYHC  +    +P++G    L +SA   V  ++  S S    T          ++D+ T+  ED+AFLQFTSGST+DPKGVM+T+GNL HN+  ++  N+   +   +G      + +  FSWLP +HD+G
Sbjct:   18 ARSSQDT-----FLQAIALSVAKTPEDRVFARWYNRVGQVESTRTFHGVWGASGEIAHLLRVEWGLTKGDRVVLAFNFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLQKLQLIVEGCTPNMILVCPLVNKLRLAWKLRAVATGKIGWPNLPYHCPDVKEETIPTSG----LSYSA---VEWKSRGSKSAEAGTKRPSFQMQRPSFDDPTIKPEDVAFLQFTSGSTSDPKGVMLTYGNLTHNIDAII--NSSNAQIVERGGVPGGNRTW--FSWLPAFHDMG 286          
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Match: D7G4W3_ECTSI (Acyl CoA Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W3_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 7.830e-60
Identity = 113/242 (46.69%), Postives = 155/242 (64.05%), Query Frame = 3
Query:  330 DKGDVVESRTFAGLWAEAGRIAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGVVAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVLSEARKLWPLVPYHC---LASADVPSTGARGGLLFSAAKMVLGENDPSTSTAVATNTYDEQTLVAEDIAFLQFTSGSTADPKGVMITFGNLMHNVHLVLTGNTKTMEAFCKGRTEDLPQRFVGFSWLPQYHDLG 1046
            +KG V  +RTF G+WA +G IAH LR   GL KGDRVVL + FGL FFA FLGCLRAG++AVP+YPP+P TL KSL K+Q+ VDSC P++IL+   VN LRL+S+L  ++     WP + YHC   +    + + G RGG    + +M      PS         +D+ T+   D+AFLQFTSGST+DPKGVM+T+GNL HN+  ++  N+   +   +G   +  + +  FSWLP +HD+G
Sbjct:   12 NKGQVESTRTFHGVWAASGEIAHLLRVEWGLSKGDRVVLAFNFGLGFFAVFLGCLRAGILAVPVYPPNPATLKKSLQKLQLIVDSCTPKMILVCPLVNKLRLSSKLRAVATGNSDWPKLRYHCCPDVKGETIAAAGWRGG---GSKQMGPETKRPS---------FDDPTIKPGDVAFLQFTSGSTSDPKGVMLTYGNLTHNIACII--NSSDAQIAARGGPAEGNRTW--FSWLPTFHDMG 237          
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Match: D7G7J4_ECTSI (Carrier domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J4_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.420e-57
Identity = 99/151 (65.56%), Postives = 119/151 (78.81%), Query Frame = 3
Query:  249 PSVPFLAWVERTVKERAEGDT---FGEWFDDKGDVVESRTFAGLWAEAGRIAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGVVAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVLSEARKLWPLVPY 692
            PSV  L W E TV+ R+ G+    F  WFD +G+V E+ TFA +WAEAGRIAHELR S GL KGDR +LCYGFGL FFAAFLGCLRAGV+AVP+YPPSP TLSKSL K+Q  V++C P++IL+S DVN LRLAS+LN +S AR+LWP +PY
Sbjct:    2 PSVELLRWAEATVRGRSGGENDAVFARWFDAQGEVSETHTFASVWAEAGRIAHELRVSWGLGKGDRAILCYGFGLDFFAAFLGCLRAGVLAVPVYPPSPLTLSKSLTKLQGIVEACDPKVILISGDVNHLRLASKLNFVSSARRLWPDLPY 152          
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Match: A0A6H5J7K1_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7K1_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 6.750e-54
Identity = 104/220 (47.27%), Postives = 140/220 (63.64%), Query Frame = 3
Query:  390 IAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGVVAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVLSEARKLWPLVPYHCLASADVPSTG-ARGGLLFSAAKMVLGENDPSTSTAVATNTYDEQTLVAEDIAFLQFTSGSTADPKGVMITFGNLMHNVHLVLTGNTKTMEAFCKGRTEDLPQRFVGFSWLPQYHDLG 1046
            IAH LR   GL KGDRVVL + FGL FFA FLGCLRAG++AVP+YPP+P TL KSL K+Q+ VD C P++ L+   VN LRLAS+L  ++  +  WP + YHC    DV     A GG+  S      G    S        ++D+ T+  +D+AFLQFTSGST+DPKGVM+T+GNL HN+ +++  N+   +   +G   D  + +  FSWLP +HD+G
Sbjct:   26 IAHLLRVEWGLSKGDRVVLAFDFGLRFFAVFLGCLRAGIIAVPVYPPNPATLKKSLKKLQLIVDDCAPKMALVCPLVNKLRLASKLRAVATGKSGWPDLTYHC---PDVKEEKIATGGMSSSGVGWRSG-GGRSADVKRTRPSFDDPTIKPQDVAFLQFTSGSTSDPKGVMLTYGNLTHNIGVIV--NSSNAQIAARGEVADGQRTW--FSWLPTFHDMG 237          
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Match: A0A4D9CX67_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CX67_9STRA)

HSP 1 Score: 192 bits (489), Expect = 5.720e-51
Identity = 115/266 (43.23%), Postives = 155/266 (58.27%), Query Frame = 3
Query:  252 SVPFLAWVERTVKERAEGDTFGEWFDDKGDVVESRTFAGLWAEAGRIAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGVVAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVLSEARKLWPLVPYHCLASADVPSTGARGGLLFSAAKMVLGENDPSTSTAVATNTYDEQTLVAEDIAFLQFTSGSTADPKGVMITFGNLMHNVHLVLTGNTKTMEAFC-KGRTEDLPQRFVGFSWLPQYHDLG 1046
            SV  L+  +   +E+  G  F  W  DK + ++  ++  +W  +G IA+ L    G++KG+RV+LCYGFGL FF AFL CLR GVVAVP+YPP+PT L  SL K+++ V S    L L  + +N  R AS+LNVLS A+  WP                   GL + +   +L     ST T+      DE  L   DIAFLQ+TSGST DPKGVMITFGNL HNV+ ++  + +  + FC + RT +  +  VG SWLPQYHD+G
Sbjct:   35 SVRLLSHAKSMAEEKG-GQIFSTWIGDKNETIDF-SYEYIWDRSGAIAYHLNTKYGIKKGERVILCYGFGLEFFVAFLACLRLGVVAVPVYPPNPTKLKMSLEKLELIVTSAGATLCLTDNTINWFRKASQLNVLSSAK--WPK------------------GLKWDSTDSILA----STGTSC-----DEPGLHPNDIAFLQYTSGSTGDPKGVMITFGNLDHNVNDLILFSLRR-DIFCNRTRTLENIEVPVGVSWLPQYHDMG 268          
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Match: W7U9U8_9STRA (Polyketide synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9U8_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.050e-49
Identity = 110/249 (44.18%), Postives = 146/249 (58.63%), Query Frame = 3
Query:  303 GDTFGEWFDDKGDVVESRTFAGLWAEAGRIAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGVVAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVLSEARKLWPLVPYHCLASADVPSTGARGGLLFSAAKMVLGENDPSTSTAVATNTYDEQTLVAEDIAFLQFTSGSTADPKGVMITFGNLMHNVHLVLTGNTKTMEAFC-KGRTEDLPQRFVGFSWLPQYHDLG 1046
            G  F  W  DK + ++  ++  +W  +G IA+ L    G++KG+RV+LCYGFGL FF AFL CLR GVVAVP+YPP+PT L  SL K+++ V S    L L  + +N  R AS+LNVLS A+  WP                   GL + +   +L      T T+      DE  L   DIAFLQ+TSGST DPKGVMITFGNL HNV+ ++  + +  + FC + RT +  +  VG SWLPQYHD+G
Sbjct:    7 GQIFSTWIGDKNETIDF-SYEYIWDRSGAIAYYLNTKYGIKKGERVILCYGFGLEFFVAFLACLRLGVVAVPVYPPNPTKLKMSLEKLELIVTSAGATLCLTDNTINWFRKASQLNVLSSAK--WPK------------------GLKWDSTDSILA----GTGTSC-----DEPGLHPNDIAFLQYTSGSTGDPKGVMITFGNLDHNVNDLILFSLRR-DIFCNRTRTLENIEVPVGVSWLPQYHDMG 224          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8481.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5M1_9PHAE4.650e-8854.41AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNL6_9PHAE5.510e-7045.69AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
D7FRT1_ECTSI1.510e-6744.81Long-chain acyl-CoA synthetase n=1 Tax=Ectocarpus ... [more]
D7FH91_ECTSI2.130e-6643.51AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JSY1_9PHAE2.620e-6143.16Carrier domain-containing protein n=1 Tax=Ectocarp... [more]
D7G4W3_ECTSI7.830e-6046.69Acyl CoA Synthase n=1 Tax=Ectocarpus siliculosus T... [more]
D7G7J4_ECTSI1.420e-5765.56Carrier domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5J7K1_9PHAE6.750e-5447.27AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
A0A4D9CX67_9STRA5.720e-5143.23Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U9U8_9STRA1.050e-4944.18Polyketide synthase n=1 Tax=Nannochloropsis gadita... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8481contigC-tenellus_contig8481:3868..5525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRT1
PFAMsADH_N,ADH_zinc_N,AMP-binding,Acyl_transf_1,Condensation,KAsynt_C_assoc,KR,Ketoacyl-synt_C,NAD_binding_4,PP-binding,PS-DH,Sulfotransfer_3,Thioesterase,ketoacyl-synt
Model size1049
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.4e-69
EggNOG OGsCOG0318@1|root,KOG3628@2759|Eukaryota
Descriptionfatty acid biosynthetic process
Cds size843
COG categoryIQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790107.5764897-UTR-C-tenellus_contig8481:3867..40731680790107.5764897-UTR-C-tenellus_contig8481:3867..4073Choristocarpus tenellus KU2346UTRC-tenellus_contig8481 3868..4073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790107.5870218-CDS-C-tenellus_contig8481:4073..40911680790107.5870218-CDS-C-tenellus_contig8481:4073..4091Choristocarpus tenellus KU2346CDSC-tenellus_contig8481 4074..4091 +
1680790107.6002789-CDS-C-tenellus_contig8481:4274..45721680790107.6002789-CDS-C-tenellus_contig8481:4274..4572Choristocarpus tenellus KU2346CDSC-tenellus_contig8481 4275..4572 +
1680790107.6099784-CDS-C-tenellus_contig8481:4765..51171680790107.6099784-CDS-C-tenellus_contig8481:4765..5117Choristocarpus tenellus KU2346CDSC-tenellus_contig8481 4766..5117 +
1680790107.6197567-CDS-C-tenellus_contig8481:5350..55251680790107.6197567-CDS-C-tenellus_contig8481:5350..5525Choristocarpus tenellus KU2346CDSC-tenellus_contig8481 5351..5525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8481.1.1prot_C-tenellus_contig8481.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8481 4074..5525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8481.1.1

>prot_C-tenellus_contig8481.1.1 ID=prot_C-tenellus_contig8481.1.1|Name=mRNA_C-tenellus_contig8481.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=281bp
MTELNMASSSMETGPSVPFLAWVERTVKERAEGDTFGEWFDDKGDVVESR
TFAGLWAEAGRIAHELRFSRGLEKGDRVVLCYGFGLSFFAAFLGCLRAGV
VAVPIYPPSPTTLSKSLHKMQMTVDSCKPRLILLSSDVNALRLASRLNVL
SEARKLWPLVPYHCLASADVPSTGARGGLLFSAAKMVLGENDPSTSTAVA
TNTYDEQTLVAEDIAFLQFTSGSTADPKGVMITFGNLMHNVHLVLTGNTK
TMEAFCKGRTEDLPQRFVGFSWLPQYHDLG*
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mRNA from alignment at C-tenellus_contig8481:3868..5525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8481.1.1 ID=mRNA_C-tenellus_contig8481.1.1|Name=mRNA_C-tenellus_contig8481.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1658bp|location=Sequence derived from alignment at C-tenellus_contig8481:3868..5525+ (Choristocarpus tenellus KU2346)
ACCTTGCGTTTCTATTCCTTCAGATGCGCAACGCTAGAGGATTCTCGACC TCTCTTTCTTTGAGGTCCTGTTAAAGTGCAGTGCACTACAAGGTAATCTG CATGTGCAGAGACTGAATCATCGGTAGACAGGAGCTTGTCTTCTTTACGG AGTGACTGTGGGGCACAGTCGGGCCGTGAAACGACAGGCTCTGAAGGACG GACGTCATGACTGAACTCAACATGGTGAATGAGCTTGCAACTTTGACCGT ACTCTGCATTTGAGTGGAAGATAGTAATACAAGTAGGAATAGGGACTAAC ATTAACACTGAGCGAGTATATCGACTGCATGACGCTGGACATTTTTGGGT GAAGACACTCTTGTTGACAACGATTGATTGCGCTTGACGGTCCCTGTCGC TGCCCAGGCGAGTTCCTCGATGGAAACAGGACCTTCTGTGCCTTTCCTGG CATGGGTCGAGAGAACAGTAAAAGAAAGGGCTGAAGGTGACACGTTTGGG GAGTGGTTTGATGACAAGGGAGACGTGGTCGAGTCTCGAACCTTCGCCGG TCTGTGGGCAGAGGCCGGTCGCATTGCTCACGAGCTTCGTTTTTCAAGGG GTCTGGAAAAGGGAGACCGTGTTGTGCTGTGCTATGGCTTTGGACTGAGC TTTTTTGCAGCCTTCCTTGGGTGCCTTCGCGCAGGGGTTGTCGCAGTTCC CATATGTGAGTAGACATGATGCCCTTTATGTTTAGTAGAGTATGTACTGA ACAGTCGTCTGGCAGTAAGCCTGCTTTAGAGCATAAGGAAGGACCAGCGT GTATCAGTAGTACTACTGCACTTATTGTCTGAAGTTCCTCATAACTTAGT GCCTTCAGTTTCCCCTCCCCTCGTTACCCTTCTTCAATCTTCCCCCAGAC CCCCCGAGCCCGACCACACTCTCCAAGTCCTTGCACAAGATGCAGATGAC TGTGGACTCGTGCAAGCCTAGGTTGATCCTCTTATCATCAGATGTCAATG CTCTACGCCTTGCATCTCGTCTCAATGTGCTTTCCGAGGCACGTAAATTA TGGCCGCTTGTGCCGTATCACTGCCTCGCATCTGCCGACGTTCCTTCGAC TGGGGCGAGAGGTGGCCTACTCTTTTCGGCAGCAAAGATGGTTCTTGGAG AAAACGATCCCTCTACTAGCACTGCTGTCGCCACCAACACGTACGATGAG CAGACGCTTGTTGCTGAAGACATAGCTTTCTTACAGTTCACATCTGGAAG GTAAGTGATCATATTCGTTCATCAGCAGTACAATCGACGACCTAGCTGAG CTTCATGTCCCCAATGCCATGCTGTCGATACTTACACACACACACACACA CACACATACATATTGATGGGGTTACTCCTTCTTGCCTCACATCCTCCTTG TTCCATGAAACCTTTCTCGTCTCATTAGCACCTATCTCTCCCTCATCGAC CCGTTTGAACTCTTTTTTATTGTGTGCTTGCAGTACTGCTGACCCGAAGG GGGTCATGATCACCTTTGGCAATCTCATGCACAATGTGCACCTTGTGCTT ACGGGGAATACCAAGACCATGGAGGCATTCTGCAAGGGTCGAACGGAGGA CCTGCCACAACGCTTCGTTGGATTTTCCTGGCTCCCACAGTACCATGACC TAGGGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig8481:3868..5525+

>mRNA_C-tenellus_contig8481.1.1 ID=mRNA_C-tenellus_contig8481.1.1|Name=mRNA_C-tenellus_contig8481.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=843bp|location=Sequence derived from alignment at C-tenellus_contig8481:3868..5525+ (Choristocarpus tenellus KU2346)
ATGACTGAACTCAACATGGCGAGTTCCTCGATGGAAACAGGACCTTCTGT
GCCTTTCCTGGCATGGGTCGAGAGAACAGTAAAAGAAAGGGCTGAAGGTG
ACACGTTTGGGGAGTGGTTTGATGACAAGGGAGACGTGGTCGAGTCTCGA
ACCTTCGCCGGTCTGTGGGCAGAGGCCGGTCGCATTGCTCACGAGCTTCG
TTTTTCAAGGGGTCTGGAAAAGGGAGACCGTGTTGTGCTGTGCTATGGCT
TTGGACTGAGCTTTTTTGCAGCCTTCCTTGGGTGCCTTCGCGCAGGGGTT
GTCGCAGTTCCCATATACCCCCCGAGCCCGACCACACTCTCCAAGTCCTT
GCACAAGATGCAGATGACTGTGGACTCGTGCAAGCCTAGGTTGATCCTCT
TATCATCAGATGTCAATGCTCTACGCCTTGCATCTCGTCTCAATGTGCTT
TCCGAGGCACGTAAATTATGGCCGCTTGTGCCGTATCACTGCCTCGCATC
TGCCGACGTTCCTTCGACTGGGGCGAGAGGTGGCCTACTCTTTTCGGCAG
CAAAGATGGTTCTTGGAGAAAACGATCCCTCTACTAGCACTGCTGTCGCC
ACCAACACGTACGATGAGCAGACGCTTGTTGCTGAAGACATAGCTTTCTT
ACAGTTCACATCTGGAAGTACTGCTGACCCGAAGGGGGTCATGATCACCT
TTGGCAATCTCATGCACAATGTGCACCTTGTGCTTACGGGGAATACCAAG
ACCATGGAGGCATTCTGCAAGGGTCGAACGGAGGACCTGCCACAACGCTT
CGTTGGATTTTCCTGGCTCCCACAGTACCATGACCTAGGGTAA
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