mRNA_C-tenellus_contig8420.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8420.1.1
Unique NamemRNA_C-tenellus_contig8420.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8420.1.1 vs. uniprot
Match: A0A6H5KKD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.620e-5
Identity = 97/304 (31.91%), Postives = 122/304 (40.13%), Query Frame = 3 
Query:  510 GKSEGMRRDWEGESLYAVSSGKGPEVVSTEDSLKASERSEDSLSAWRAGPALAIGVGGSPASLVPSTIASEEGAVEGTKRSVSMAWDMGAAGGLRMAGLER---DDSLSSIGGVGEEKLGSPRG----------ELAEVFQRKASAFIKRSRAREEANRRKREDRRLAREKVVGDEEKETSPLVGELELRGGNEEHSAERLGDSADSQEQHRVQRAWGP-ERVVGGSPMASSSRSSRWAGRGIEGENGP----RRVSVKEARMRTNRLYNNLPEVKEARERKEKEKERIRRLLSAREQEKLRSR 1367
            G++ G R   EG  +      +G +   TEDSLK SE S DSL+  R GP              P     E GA    + + + AW++G+A  +R    ER   D      GG      G              ELA  F+ +AS FI RSRAREEA           R+                                   D   Q  V    GP  R+ GG  +A           G+ GE+G     RRVS++EAR RT RLYN+LPEV+EA        ER+RRLL AR  EK R R
Sbjct: 1846 GEAAGPRHGHEGGGIR-----QGEDTALTEDSLKFSEPSLDSLAMAREGP--------------PGR---EPGAHAAARPAGAAAWEIGSAEVVRDETQERPAPDHRGCDAGGPSGRSEGXXXXXXXXXXXXXXELAAFFRSRASGFIARSRAREEA----------VRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDQPHQTGV----GPGARMRGGVDVAGPPS-------GLLGESGGXXXRRRVSIQEARKRTARLYNSLPEVREAXXXXXXXXERVRRLLEARALEKSRHR 2106
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8420.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KKD4_9PHAE1.620e-531.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8420contigC-tenellus_contig8420:3057..6239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2038
Hectar predicted targeting categoryother localisation
Exons4
Cds size1287
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8420.1.1prot_C-tenellus_contig8420.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8420 3683..6114 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790104.2616673-UTR-C-tenellus_contig8420:3056..36821680790104.2616673-UTR-C-tenellus_contig8420:3056..3682Choristocarpus tenellus KU2346UTRC-tenellus_contig8420 3057..3682 -
1680790104.3246505-UTR-C-tenellus_contig8420:6114..62391680790104.3246505-UTR-C-tenellus_contig8420:6114..6239Choristocarpus tenellus KU2346UTRC-tenellus_contig8420 6115..6239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790104.2741663-CDS-C-tenellus_contig8420:3682..38391680790104.2741663-CDS-C-tenellus_contig8420:3682..3839Choristocarpus tenellus KU2346CDSC-tenellus_contig8420 3683..3839 -
1680790104.2835228-CDS-C-tenellus_contig8420:4178..44921680790104.2835228-CDS-C-tenellus_contig8420:4178..4492Choristocarpus tenellus KU2346CDSC-tenellus_contig8420 4179..4492 -
1680790104.3000228-CDS-C-tenellus_contig8420:4787..49451680790104.3000228-CDS-C-tenellus_contig8420:4787..4945Choristocarpus tenellus KU2346CDSC-tenellus_contig8420 4788..4945 -
1680790104.3103642-CDS-C-tenellus_contig8420:5456..61141680790104.3103642-CDS-C-tenellus_contig8420:5456..6114Choristocarpus tenellus KU2346CDSC-tenellus_contig8420 5457..6114 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8420.1.1

>prot_C-tenellus_contig8420.1.1 ID=prot_C-tenellus_contig8420.1.1|Name=mRNA_C-tenellus_contig8420.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=429bp
MSGFSEWEEMKENDSGERKEERDDEVRGPHPLDSKKYDRERASEVSGVEG
DWERGENEGCSGGNKLDMVLAQQRSPNRDRDDDVSGDVIVNELGLWSGSD
SMLSGSQSLLSASVLEVMRGQGGGQGEEGKSEGMRRDWEGESLYAVSSGK
GPEVVSTEDSLKASERSEDSLSAWRAGPALAIGVGGSPASLVPSTIASEE
GAVEGTKRSVSMAWDMGAAGGLRMAGLERDDSLSSIGGVGEEKLGSPRGE
LAEVFQRKASAFIKRSRAREEANRRKREDRRLAREKVVGDEEKETSPLVG
ELELRGGNEEHSAERLGDSADSQEQHRVQRAWGPERVVGGSPMASSSRSS
RWAGRGIEGENGPRRVSVKEARMRTNRLYNNLPEVKEARERKEKEKERIR
RLLSAREQEKLRSRRGGGRRGSGRREVG*
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mRNA from alignment at C-tenellus_contig8420:3057..6239-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8420.1.1 ID=mRNA_C-tenellus_contig8420.1.1|Name=mRNA_C-tenellus_contig8420.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3183bp|location=Sequence derived from alignment at C-tenellus_contig8420:3057..6239- (Choristocarpus tenellus KU2346)
ATTTGGTCAGTGGTGAGAAATCTTTGATCAAGGAGGACGAATTGAGTACC
AGTATATCGGGACTGGGAGACAGCAGTGAGGTTCAAGATGGTAGAAACAT
CTTGTCTGAGGTGAGTTTGTCGTTGATGAGCGGTTTCTCAGAGTGGGAAG
AGATGAAGGAGAATGACAGTGGAGAACGGAAAGAGGAACGGGACGATGAG
GTCAGGGGTCCTCATCCGCTGGATAGCAAGAAGTACGATCGGGAGCGGGC
AAGTGAAGTGTCAGGTGTGGAGGGGGACTGGGAAAGGGGAGAGAACGAGG
GGTGCTCGGGTGGGAACAAGCTTGACATGGTGTTAGCCCAACAAAGATCC
CCCAACCGTGATAGAGATGATGACGTTAGTGGAGATGTGATTGTGAATGA
GCTTGGGCTGTGGTCGGGTTCGGATTCTATGCTCTCTGGTTCTCAGAGTC
TTCTGAGCGCCTCGGTGTTAGAGGTTATGCGAGGGCAAGGAGGGGGTCAA
GGTGAGGAGGGCAAGTCAGAAGGGATGAGAAGAGACTGGGAGGGGGAGAG
CCTCTATGCCGTCAGCAGTGGGAAAGGGCCTGAAGTGGTATCAACTGAGG
ACTCTCTCAAGGCCTCGGAGAGGTCGGAGGATTCTCTTTCTGCATGGCGG
GCAGGTCCCGCCTTGGCAATCGGGGTGGGAGGGTCTCCAGCCTCTTTGGT
ACCCTCGACAATTGCATCAGAGGAGGGGGCAGTGGAAGGGACCAAGCGAA
GCGTCTCGATGGCCTGGGACATGGGAGCAGCAGGTCAGGACCCCTGATCC
CTCCTTGAGTTCCGTTTTTTTTGTTGTTGTGGAGATTGACAGCTGCCCCT
GTTGATGCCTCACATATTGAGATTATGCACAGAGTTTCTTTGTGCTCTCA
GCATGCAGCGTGGTCGTGAGCTGATGTGTTGTGGACTGGGCGTTTGAGTG
AGCACAGGGGTGCCTTTGGATTTAGAGGACGTGTGCAGTAGGATTTTTCC
GCGTTTAGATGAAATAGTACTTGATTTGTGTCCTGCTCAAGGCATTACTG
GTGCCAGTCCGGCCTATTTAGTTCAGATACACTTTCTGCTGGATGATGTA
CCTATCGCCGCGCTGCTGACAGCACCATCCCATATTTTATACCCTCCATA
TTTTTCCAAGTATTGTGTAAATAGGGTTTAAGATTTAAAAAAAAAATGGT
GGGTCAGAAGCACCAACTGAGTAGTACTCCTTTGCAATCGGCATCCCCTC
CCCCTATGGGCGGGGCTGTGCACCCGCCTAACTTTATCCTCAAGGTGGAT
TGAGAATGGCAGGGCTGGAGCGGGACGACTCTTTGTCATCAATAGGGGGA
GTTGGTGAGGAGAAGTTGGGCAGCCCCAGGGGAGAGCTGGCGGAGGTTTT
CCAAAGGAAAGCGTCTGCGTTCATCAAGAGGTCAAGGGCAAGGGAGGAGG
CGGTGAGAGCATGTCGATCGAGTCTTTCCATCCTCTAAATGCATTTTGTG
TTTTGTGTTTTGTTTTGTTTTTTCGGGGGGGAGGGGGCAACATCCATCTT
GTTCTTGCCCTTTTTATCTCATACTGTAGTATAGCTCAAACTCTTTTCAA
GGGTTTATTGAGTCAACCCACTCACCCTTTCACCCACGTGTATATCCTTG
TCCCTCAACTGCCTTCACTGCATTCTACTGATCGTACCTCCCTAACCCGA
AAACCCTGATCCTAGCCCTAATCCTAACCCCAATAAACTCCAACCAGAAC
CGAAGGAAGCGGGAAGATAGGCGATTGGCCAGAGAGAAGGTGGTAGGTGA
TGAGGAAAAGGAAACATCCCCTCTCGTGGGAGAGTTAGAGTTAAGAGGGG
GGAATGAGGAACATTCTGCTGAAAGGTTAGGTGACAGTGCAGACAGCCAA
GAACAGCATCGTGTACAGCGGGCATGGGGACCAGAGAGGGTGGTGGGAGG
TTCGCCGATGGCCTCGTCCTCTCGGAGCAGTAGGTGGGCAGGGCGTGGGA
TTGAGGGGGAGAATGGTCCTCGGCGAGTCTCGGTGAAGGAAGCCCGAATG
AGGACCAACAGGTGATGAATGAAACAGATGAATGAAAAACGGGGACGGAT
GTTTTCACAAGTAGGCAGGACGGACTGAAGATTAGAGTACGTTTTTTTTT
TTATAGGTTTCTCGGCTCCTGTCGACTCCTCTTTCTCGACCTCTGATGTG
AGCGCATGGGTATGGAGTCTCTGAGGAGGGGGACCAAAATAAATAGTCAT
ATTGAGGTGCTGGGAAGGATTCCTGAATGGGGGGTGGTGAGGATCACGAT
CGTTGGTGTGCATCGCAGCCTCGAGAGGAGAATGCTTGGTAGGTATCCTC
TGTGGTCACCAACCCCACCCCGTTCCCGAAATGGTGTGTTGCATTGACAG
GCTGTACAACAACCTACCCGAGGTGAAGGAGGCTCGAGAGAGGAAGGAAA
AGGAGAAGGAACGCATCCGTAGACTGCTTTCCGCCAGGGAACAAGAGAAA
CTCAGGAGCAGGAGGGGGGGGGGAAGGCGAGGGTCGGGGAGAAGGGAAGT
TGGATGAGGGTGCTGGTGCTAGTGTGCCGACCCCAAGTCTCCCTTCCTCA
CGCACGATAGGCTGCTGGGCAAACAGCTGTTTGGGAAAGACTGCCATGAG
GAAGGGGGGGGGAGGGGGCTGATTGTTTCTTGTGCAACGTTGTTTTTGCT
TGTTTTTGGATGTGTGCCTTGGTATCACAGTCCTTTTTTCCATCCTGAGT
TATGTGTGTGTGTGTGTGTTTTGTGTATGAGGCATCGGTTTGAATGCAAT
TCAATGTGGACACTTGTGATTGAGAAATTGTTGAGTGCTCGGAAAGAGAT
GATGTTATGTGGACATTTTGAAGGTTGGATCCCGAGTTGGAATGAGGTCT
AGGAGCTCTGCAGTTGCGGTGGGCTTGCGCACCATTAGCTTCCTTTTGTG
TGTGTCTTGTAATTTAGCGTGCCTAGGTAATGCCCAGCACAGCAACCTGT
GCTGAAGGGCGCCTCTCAGGTGTTGATGCTTTTGCCTGCCATGCGGCTGG
GGTGTTGTTGTTGTGAGGCTGTGAGCAAGACAAGACAAACTTGCCTGCCG
TGTTCTACATATAGTGTTCTGGGATCTAAATAGTTTAAACTGTGATGACG
ATGCCATCTGGTAGAAGCTCGAGTGCATAGTTA
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Coding sequence (CDS) from alignment at C-tenellus_contig8420:3057..6239-

>mRNA_C-tenellus_contig8420.1.1 ID=mRNA_C-tenellus_contig8420.1.1|Name=mRNA_C-tenellus_contig8420.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1287bp|location=Sequence derived from alignment at C-tenellus_contig8420:3057..6239- (Choristocarpus tenellus KU2346)
ATGAGCGGTTTCTCAGAGTGGGAAGAGATGAAGGAGAATGACAGTGGAGA
ACGGAAAGAGGAACGGGACGATGAGGTCAGGGGTCCTCATCCGCTGGATA
GCAAGAAGTACGATCGGGAGCGGGCAAGTGAAGTGTCAGGTGTGGAGGGG
GACTGGGAAAGGGGAGAGAACGAGGGGTGCTCGGGTGGGAACAAGCTTGA
CATGGTGTTAGCCCAACAAAGATCCCCCAACCGTGATAGAGATGATGACG
TTAGTGGAGATGTGATTGTGAATGAGCTTGGGCTGTGGTCGGGTTCGGAT
TCTATGCTCTCTGGTTCTCAGAGTCTTCTGAGCGCCTCGGTGTTAGAGGT
TATGCGAGGGCAAGGAGGGGGTCAAGGTGAGGAGGGCAAGTCAGAAGGGA
TGAGAAGAGACTGGGAGGGGGAGAGCCTCTATGCCGTCAGCAGTGGGAAA
GGGCCTGAAGTGGTATCAACTGAGGACTCTCTCAAGGCCTCGGAGAGGTC
GGAGGATTCTCTTTCTGCATGGCGGGCAGGTCCCGCCTTGGCAATCGGGG
TGGGAGGGTCTCCAGCCTCTTTGGTACCCTCGACAATTGCATCAGAGGAG
GGGGCAGTGGAAGGGACCAAGCGAAGCGTCTCGATGGCCTGGGACATGGG
AGCAGCAGGTGGATTGAGAATGGCAGGGCTGGAGCGGGACGACTCTTTGT
CATCAATAGGGGGAGTTGGTGAGGAGAAGTTGGGCAGCCCCAGGGGAGAG
CTGGCGGAGGTTTTCCAAAGGAAAGCGTCTGCGTTCATCAAGAGGTCAAG
GGCAAGGGAGGAGGCGAACCGAAGGAAGCGGGAAGATAGGCGATTGGCCA
GAGAGAAGGTGGTAGGTGATGAGGAAAAGGAAACATCCCCTCTCGTGGGA
GAGTTAGAGTTAAGAGGGGGGAATGAGGAACATTCTGCTGAAAGGTTAGG
TGACAGTGCAGACAGCCAAGAACAGCATCGTGTACAGCGGGCATGGGGAC
CAGAGAGGGTGGTGGGAGGTTCGCCGATGGCCTCGTCCTCTCGGAGCAGT
AGGTGGGCAGGGCGTGGGATTGAGGGGGAGAATGGTCCTCGGCGAGTCTC
GGTGAAGGAAGCCCGAATGAGGACCAACAGGCTGTACAACAACCTACCCG
AGGTGAAGGAGGCTCGAGAGAGGAAGGAAAAGGAGAAGGAACGCATCCGT
AGACTGCTTTCCGCCAGGGAACAAGAGAAACTCAGGAGCAGGAGGGGGGG
GGGAAGGCGAGGGTCGGGGAGAAGGGAAGTTGGATGA
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