mRNA_C-tenellus_contig842.11.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_C-tenellus_contig842.11.1
Unique Name	mRNA_C-tenellus_contig842.11.1
Type	mRNA
Organism	Choristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)

Homology

[Close]

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Match: A0A6H5K0H9_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 4.580e-14
Identity = 86/186 (46.24%), Postives = 95/186 (51.08%), Query Frame = 3

Query:  105 ASMNPYGIP-HLSMAGMAMGYSPYAHMAAAQHAAMXXXXXXXXXXXXXXXKDGGVDSRTEAVAPP-----------------------------------APAQGSSLPQMPQPYPHLGVYGGYPGMMGMPFPFQGQAYPGMPGYGMVGMGGYPSLACGGGGSMGEPM--SMMGGMNGMAAMQWAA 548
            A+ +PYG+P H+SMAGM MGYSPY HMAAA     XXXXXXXXXXXXXXX                                                  +P  G  L  M         YGGYPGMMGMP+PFQ   YPGMPGYG+ GMG YPSLA GGG    +P   S   GM+GMAAMQ AA
Sbjct:  313 AAQSPYGMPPHMSMAGMGMGYSPYVHMAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPMHGYGLHAM---------YGGYPGMMGMPYPFQAHGYPGMPGYGVPGMGSYPSLAAGGG----DPTLASSSFGMSGMAAMQLAA 485

[Close]

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Match: A0A6H5JL29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL29_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.790e-12
Identity = 43/80 (53.75%), Postives = 50/80 (62.50%), Query Frame = 1

Query: 2101 SLDPHRHNLNNFAVESFGHLRKQVDSFLDEIAMHAVGGRGIGGSSRKGAVKSCL*QIVSVTIQVALSRRVLRFKLETPGR 2340
            S D H   L   AVESFG L ++   F+DE+A HAVGGR  G  + KG  K  L QIVSV  QVA+SRRV R+KL   GR
Sbjct:   61 SFDEHSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGR 140

[Close]

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.600e-12
Identity = 43/80 (53.75%), Postives = 50/80 (62.50%), Query Frame = 1

Query: 2101 SLDPHRHNLNNFAVESFGHLRKQVDSFLDEIAMHAVGGRGIGGSSRKGAVKSCL*QIVSVTIQVALSRRVLRFKLETPGR 2340
            S D  R  L   AVESFG L ++   F+DE+A HAVGGR  G  + KG  K  L QIVSV  QVA+SRRV R+KL   GR
Sbjct:   98 SFDERRFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGR 177

[Close]

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Match: A0A6H5K2J3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J3_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 7.700e-12
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1

Query: 2101 SLDPHRHNLNNFAVESFGHLRKQVDSFLDEIAMHAVGGRGIGGSSRKGAVKSCL*QIVSVTIQVALSRRVLRFKLETPGR 2340
            S D     L   AVESFG L ++   F+DE+A HAVGGR  G  + KG  K  L QIVSV  QVA+SRRV R+KL   GR
Sbjct:   21 SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGR 100

[Close]

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Match: A0A6H5JZN4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN4_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.470e-11
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 1

Query: 2101 SLDPHRHNLNNFAVESFGHLRKQVDSFLDEIAMHAVGGRGIGGSSRKGAVKSCL*QIVSVTIQVALSRRVLRFKLETPGR 2340
            S D   + L   AVESFG L ++   F+DE+A HAVGGR  G  + KG  K  L QIVSV  QVA+SRRV R+KL   GR
Sbjct:   59 SFDEGSYKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGR 138

[Close]

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Match: A0A6H5KB86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB86_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.930e-11
Identity = 40/72 (55.56%), Postives = 47/72 (65.28%), Query Frame = 1

Query: 2125 LNNFAVESFGHLRKQVDSFLDEIAMHAVGGRGIGGSSRKGAVKSCL*QIVSVTIQVALSRRVLRFKLETPGR 2340
            L   AVESFG L ++   F+DE+A HAVGGR  G  + KG  K  L QIVSV  QVA+SRRV R+KL   GR
Sbjct:   32 LTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGR 103

[Close]

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Match: A0A6H5JU10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU10_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 4.470e-11
Identity = 41/80 (51.25%), Postives = 48/80 (60.00%), Query Frame = 1

Query: 2101 SLDPHRHNLNNFAVESFGHLRKQVDSFLDEIAMHAVGGRGIGGSSRKGAVKSCL*QIVSVTIQVALSRRVLRFKLETPGR 2340
            S D     L   AVESFG L ++   F+DE+A HA GGR  G  S KG  K  L +IVSV  QVA+SRRV R+KL   GR
Sbjct:   37 SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAAGGRDGGTMSLKGVFKERLPRIVSVATQVAISRRVQRYKLALRGR 116

[Close]

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.700e-10
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1

Query: 2101 SLDPHRHNLNNFAVESFGHLRKQVDSFLDEIAMHAVGGRGIGGSSRKGAVKSCL*QIVSVTIQVALSRRVLRFKLETPGR 2340
            S D     L   AVESFG L ++   F+DE+A HAVGGR  G  + KG  K  L QIVSV  QVA+SRRV R+KL   GR
Sbjct:  210 SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGR 289

[Close]

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.420e-10
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1

Query: 2101 SLDPHRHNLNNFAVESFGHLRKQVDSFLDEIAMHAVGGRGIGGSSRKGAVKSCL*QIVSVTIQVALSRRVLRFKLETPGR 2340
            S D     L   AVESFG L ++   F+DE+A HAVGGR  G  + KG  K  L QIVSV  QVA+SRRV R+KL   GR
Sbjct:  233 SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGR 312

[Close]

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.280e-10
Identity = 42/80 (52.50%), Postives = 49/80 (61.25%), Query Frame = 1

Query: 2101 SLDPHRHNLNNFAVESFGHLRKQVDSFLDEIAMHAVGGRGIGGSSRKGAVKSCL*QIVSVTIQVALSRRVLRFKLETPGR 2340
            S D     L   AVESFG L ++   F+DE+A HAVGGR  G  + KG  K  L QIVSV  QVA+SRRV R+KL   GR
Sbjct:  219 SFDERSFKLTTLAVESFGRLGEEGYEFIDELATHAVGGRDGGTMALKGVFKERLLQIVSVATQVAISRRVQRYKLALRGR 298

The following BLAST results are available for this feature:

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot

BLAST of mRNA_C-tenellus_contig842.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K0H9_9PHAE	4.580e-14	46.24	RWP-RK domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JL29_9PHAE	1.790e-12	53.75	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAD2_9PHAE	7.600e-12	53.75	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K2J3_9PHAE	7.700e-12	52.50	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZN4_9PHAE	1.470e-11	52.50	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KB86_9PHAE	3.930e-11	55.56	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JU10_9PHAE	4.470e-11	51.25	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JPW7_9PHAE	2.700e-10	52.50	Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K198_9PHAE	3.420e-10	52.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUN7_9PHAE	4.280e-10	52.50	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
C-tenellus_contig842	contig	C-tenellus_contig842:10332..13001 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Choristocarpus tenellus KU2346 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	2670
Hectar predicted targeting category	other localisation
Exons	1
Cds size	846

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790104.2026153-UTR-C-tenellus_contig842:10331..10429	1680790104.2026153-UTR-C-tenellus_contig842:10331..10429	Choristocarpus tenellus KU2346	UTR	C-tenellus_contig842 10332..10429 +
1680790104.2237334-UTR-C-tenellus_contig842:11275..13001	1680790104.2237334-UTR-C-tenellus_contig842:11275..13001	Choristocarpus tenellus KU2346	UTR	C-tenellus_contig842 11276..13001 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790104.2151508-CDS-C-tenellus_contig842:10429..11275	1680790104.2151508-CDS-C-tenellus_contig842:10429..11275	Choristocarpus tenellus KU2346	CDS	C-tenellus_contig842 10430..11275 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-tenellus_contig842.11.1	prot_C-tenellus_contig842.11.1	Choristocarpus tenellus KU2346	polypeptide	C-tenellus_contig842 10430..11275 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-tenellus_contig842:10332..13001+
coding sequence from alignment at C-tenellus_contig842:10332..13001+

protein sequence of mRNA_C-tenellus_contig842.11.1

>prot_C-tenellus_contig842.11.1 ID=prot_C-tenellus_contig842.11.1|Name=mRNA_C-tenellus_contig842.11.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=282bp
MAASMNPYGIPHLSMAGMAMGYSPYAHMAAAQHAAMAAAAVTASTAGGGG
GKDGGVDSRTEAVAPPAPAQGSSLPQMPQPYPHLGVYGGYPGMMGMPFPF
QGQAYPGMPGYGMVGMGGYPSLACGGGGSMGEPMSMMGGMNGMAAMQWAA
HAMQYQQQLQQQQQLHQQQMEQSHGCGAGSSDSEEGEDDLDGEAGHGGNN
GAGDRGDQRSGGRKVGSDGHGKAGVGGMPEDGEETQSDGDAEEEPRWEPP
AIVGRVNTAQLTRGEGGSAGSSHVLRGEHVP*

mRNA from alignment at C-tenellus_contig842:10332..13001+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-tenellus_contig842.11.1 ID=mRNA_C-tenellus_contig842.11.1|Name=mRNA_C-tenellus_contig842.11.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2670bp|location=Sequence derived from alignment at C-tenellus_contig842:10332..13001+ (Choristocarpus tenellus KU2346)
GGGAGGATAACGAGGGAGAAGAAGGCAGTACAAGTTCATCGCCGGCAAAT
GGAACACCATCAGAAGGTGAGACGTTGGCGGCAGCTGCAGCTGCGGCCAT
GGCTGCTTCAATGAACCCCTATGGTATCCCACACCTCTCCATGGCAGGAA
TGGCCATGGGATACAGCCCATATGCACACATGGCAGCTGCTCAGCATGCA
GCTATGGCAGCAGCAGCTGTGACAGCGTCAACGGCTGGTGGGGGGGGAGG
AAAGGATGGGGGTGTAGACAGTAGAACTGAGGCGGTGGCACCACCTGCAC
CAGCTCAAGGCAGTTCCCTACCTCAGATGCCCCAACCATATCCACACCTT
GGGGTGTATGGGGGCTATCCTGGAATGATGGGCATGCCTTTTCCTTTCCA
GGGGCAAGCATACCCCGGAATGCCAGGGTATGGCATGGTGGGAATGGGGG
GGTATCCCAGTCTAGCGTGTGGAGGTGGTGGGAGTATGGGAGAACCAATG
TCGATGATGGGTGGGATGAATGGGATGGCTGCAATGCAATGGGCTGCCCA
TGCCATGCAGTATCAGCAACAGCTGCAGCAGCAGCAGCAGCTCCACCAGC
AGCAGATGGAACAATCTCATGGATGCGGTGCTGGCAGCTCTGACAGTGAA
GAGGGTGAGGACGATTTGGATGGCGAGGCAGGTCATGGGGGTAACAATGG
TGCTGGAGACAGGGGGGACCAAAGAAGTGGGGGAAGGAAGGTGGGTAGTG
ATGGACATGGGAAAGCAGGGGTGGGTGGGATGCCAGAGGATGGGGAGGAG
ACGCAATCTGATGGTGATGCGGAGGAAGAGCCAAGGTGGGAACCCCCAGC
TATTGTAGGTAGAGTTAACACAGCACAGTTGACTAGAGGTGAAGGTGGTT
CAGCAGGTAGCAGTCATGTTTTGAGGGGTGAGCATGTTCCATAAGATTAC
AGTGGTGGTACACCTGCGTGTCCTTGATGTTGTGGTTGCTGTCTATTATG
TTTTGACAATTGTCTCAAGTGGATGATGATCAGGAGTATATGTTTTACAG
GATTTAGTTCGGCACCACAGAGGTTACCATTGCCGGATGCTTCAATGTGG
ATGAACTCATACATGTTTTGTGGTTGAATTTTTGTCATCCGTCATGCTAC
AGTAAGGATTTTATTGATGTGTCTATATATGGTGGGCTTCTTGCCCTGTT
GGTATTCTTTTCTAAATAGATATGCTGTGTTGGCAGTGTCTAGAGAACAC
CGAGAGCACTAGCTGCCTGGTCTGTGGGTCCGCTGCCCCTCTGTCTAGTC
AGTCACTTGCCAAAGACAGGACTTGGTTTTGCAAGAGAGCATCAATGTTT
TGGCTCTTCTTCTTTGCATGCATGGGAATCCTTTAAAATCATACTTCAAC
TTTTCTGTATTTTGTGTCTTGAGTCACTGCATCATCGTGTCAGCACATTT
GACTTGTCCCAGCTGGGTGATATACATTGCACTAGAGTTGAGTACAGCTA
CCAGCAGAGCATGGGATATCAGCCTACAATGAACATTGTCAACCTTCTTG
TTTGGATAATAATCCATGTGCTATTTTAACCCAAGTATGTCACGGAGCTT
TACCTAGGCAGGTACAGGGAGAGATGGGCATAACGTTTATCTCAACGATT
TAATTTATTCGAAATTCAATATGGACACCATGTCATGCAAATCAGTCGTC
AAACATGAAACTTGGCATCTTGAGACATCACCAACTGCGTATTGTACTGC
TCTATCTCCAACTCTCTGCTGAGTTAGGAGGTTGCCAGTGCAGAGTAAGG
GAAGAGGTGTACATTAATTGCAGATAAACCATATCAATACTGTGTGAGTT
GTAGGTTCGCATATTCTGATAGTGGAAAGTACTTTGCCCTGCACTGAGGC
TAGGTCTTTTTTTTCACTTTTTGAAGACCAACTTTTGTTTCTTGGCAGTG
GAAATAGAAAGAAGACAGAGAAATGATTTTTTTTTTTAACTGCTGGGTCT
GAAATTGGGAAGGCGAACTTGAATTTTGCGTTCTAATTCAAATCAGAATA
GATCGATGTGATTGCTCGCCAAGAAAACTTTAGACACCCACTACGAGGGC
TCTCTTGACCCTCATAGGCATAACCTCAACAACTTTGCAGTGGAAAGTTT
TGGGCACCTCAGAAAGCAAGTGGATAGCTTTCTAGATGAAATAGCTATGC
ACGCAGTAGGGGGGAGGGGGATAGGAGGTTCTAGCAGGAAGGGGGCTGTC
AAATCCTGTCTATGACAGATAGTTTCTGTCACAATACAGGTGGCCCTATC
CAGACGGGTCTTGCGCTTTAAGCTGGAGACACCAGGGAGATGGGCAAGGA
AGGGCTTGTTAGATTTGTGGGATGCCTCCCTAGCCCCTCACCCTGGTGTA
CAGGACTGAGCTAGGTTAGAGGCACGGGGAGGGAATGGTGTAGCATAGCT
GGTAGTAAAATAGTGAGTAGATTAATGTTTTTCACATTTATGACTACTGT
TACTTCTTTAGGGTTAGGGTTGTTCTAATGTGTGAATAGTTTTTGTTTTT
GTTGATTTTTCCCCTGACACATATGCAAAATGTCAAGAGGGCATAATAAT
ATATATATATCCTTTTCTTTCTGATTTTTTTAATTGCACCTACCTTTTTG
GGGGGATATTAATAAATGAT

Coding sequence (CDS) from alignment at C-tenellus_contig842:10332..13001+

>mRNA_C-tenellus_contig842.11.1 ID=mRNA_C-tenellus_contig842.11.1|Name=mRNA_C-tenellus_contig842.11.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=846bp|location=Sequence derived from alignment at C-tenellus_contig842:10332..13001+ (Choristocarpus tenellus KU2346)
ATGGCTGCTTCAATGAACCCCTATGGTATCCCACACCTCTCCATGGCAGG
AATGGCCATGGGATACAGCCCATATGCACACATGGCAGCTGCTCAGCATG
CAGCTATGGCAGCAGCAGCTGTGACAGCGTCAACGGCTGGTGGGGGGGGA
GGAAAGGATGGGGGTGTAGACAGTAGAACTGAGGCGGTGGCACCACCTGC
ACCAGCTCAAGGCAGTTCCCTACCTCAGATGCCCCAACCATATCCACACC
TTGGGGTGTATGGGGGCTATCCTGGAATGATGGGCATGCCTTTTCCTTTC
CAGGGGCAAGCATACCCCGGAATGCCAGGGTATGGCATGGTGGGAATGGG
GGGGTATCCCAGTCTAGCGTGTGGAGGTGGTGGGAGTATGGGAGAACCAA
TGTCGATGATGGGTGGGATGAATGGGATGGCTGCAATGCAATGGGCTGCC
CATGCCATGCAGTATCAGCAACAGCTGCAGCAGCAGCAGCAGCTCCACCA
GCAGCAGATGGAACAATCTCATGGATGCGGTGCTGGCAGCTCTGACAGTG
AAGAGGGTGAGGACGATTTGGATGGCGAGGCAGGTCATGGGGGTAACAAT
GGTGCTGGAGACAGGGGGGACCAAAGAAGTGGGGGAAGGAAGGTGGGTAG
TGATGGACATGGGAAAGCAGGGGTGGGTGGGATGCCAGAGGATGGGGAGG
AGACGCAATCTGATGGTGATGCGGAGGAAGAGCCAAGGTGGGAACCCCCA
GCTATTGTAGGTAGAGTTAACACAGCACAGTTGACTAGAGGTGAAGGTGG
TTCAGCAGGTAGCAGTCATGTTTTGAGGGGTGAGCATGTTCCATAA