mRNA_C-tenellus_contig842.10.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig842.10.1
Unique NamemRNA_C-tenellus_contig842.10.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Match: D8LJT6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT6_ECTSI)

HSP 1 Score: 235 bits (599), Expect = 1.360e-69
Identity = 123/133 (92.48%), Postives = 127/133 (95.49%), Query Frame = 1
Query:  475 MPAPEDKRTKRGFSKRVTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQSPDRQRLQEQLVSLHYKKQLICQAATSGASAKVRKSILQMRPEELDADTLARTG 873
            +P  EDKR KRGFSKRVTLRDLERYFEYPIEEVS+MMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQ  DRQRLQEQLVSLHYKKQLICQAAT+GASAKVRKSILQMRPEELDA+TL RTG
Sbjct:   90 IPGLEDKRAKRGFSKRVTLRDLERYFEYPIEEVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTG 222          
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Match: A0A6H5K0H9_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H9_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 3.580e-68
Identity = 122/133 (91.73%), Postives = 127/133 (95.49%), Query Frame = 1
Query:  475 MPAPEDKRTKRGFSKRVTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQSPDRQRLQEQLVSLHYKKQLICQAATSGASAKVRKSILQMRPEELDADTLARTG 873
            +P  EDKR KRGFSKRVTLRDLERYFEYPIE+VS+MMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQ  DRQRLQEQLVSLHYKKQLICQAAT+GASAKVRKSILQMRPEELDA+TL RTG
Sbjct:   92 IPGLEDKRAKRGFSKRVTLRDLERYFEYPIEDVSKMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQGVDRQRLQEQLVSLHYKKQLICQAATTGASAKVRKSILQMRPEELDAETLLRTG 224          
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Match: A0A836CMG7_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.110e-17
Identity = 48/129 (37.21%), Postives = 81/129 (62.79%), Query Frame = 1
Query:  493 KRTKRGFSKRVTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSI-KYVELLARTAQSPDRQRLQEQLVSLHYKKQLICQAATSGASAKVRKSILQMRPEELDADTLARTGM 876
            ++  R   +R+TL  LE  +  P+   +R +GVS T++K+LCR+YGI+RWP+RQIRS+ K + K+++  A+   + D     E++  L  K+ ++ + A+ G +A +R +I   RP ELDAD L  +G+
Sbjct:   90 RQNSREVGQRITLSVLEACYGEPLTAAARRLGVSNTMLKKLCRRYGIQRWPHRQIRSIEKEVQKHMQARAQATSAVDIAACDERIALLQKKRAIVVKTASCGLNASLRSAIFMARPGELDADQLFSSGV 218          
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.370e-16
Identity = 44/114 (38.60%), Postives = 76/114 (66.67%), Query Frame = 1
Query:  523 VTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYV-ELLARTAQSPDRQRLQEQLVSLHYKKQLICQAATSGASAKVRKSILQMRPEELDADTL 861
            +TL  L+ ++  P+ E+++ +G+S T++K++CRKYGI+RWP+RQIRS+NKS + + E +       +R  LQ QL  L  KK+L+ + A+SG  + +R ++    PE+L+ D +
Sbjct:   14 ITLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSINKSAQELTERINGATSHEERAELQSQLHLLEKKKRLVTRGASSGLQSALRNALFLANPEQLEEDAV 127          
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI)

HSP 1 Score: 85.9 bits (211), Expect = 1.760e-15
Identity = 42/114 (36.84%), Postives = 75/114 (65.79%), Query Frame = 1
Query:  523 VTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQSPDRQ-RLQEQLVSLHYKKQLICQAATSGASAKVRKSILQMRPEELDADTL 861
            +TL  L+ Y+  P+ E+++ +G+S T++K++CRK+GI+RWP+RQIRS+NK+I+ +     +  SPD    L+ Q+  L  K++L+ + A+SG    +R +I    PE L  +++
Sbjct:   14 ITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSINKNIQDLNERINSVNSPDEHAELRNQIGLLEKKRRLVTKGASSGLHTAMRNAIFLANPEHLQEESM 127          
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.680e-14
Identity = 40/114 (35.09%), Postives = 79/114 (69.30%), Query Frame = 1
Query:  523 VTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQSPDRQ-RLQEQLVSLHYKKQLICQAATSGASAKVRKSILQMRPEELDADTL 861
            +TL  L+ Y+  P+ E+++ +G+S T++K++CRK+GI+RWP+RQIRS+NK+ + ++  A+ A + +    ++ QL  L  KK+L+ + A+SG  + +R ++    PE+L+ +++
Sbjct:   11 ITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSLNKTAQELKERAQCALTAEEHAEIEAQLQLLEKKKRLVTRGASSGLQSALRNALFLANPEQLEEESV 124          
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Match: A0A2D4BXJ0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXJ0_PYTIN)

HSP 1 Score: 80.1 bits (196), Expect = 3.410e-13
Identity = 38/96 (39.58%), Postives = 66/96 (68.75%), Query Frame = 1
Query:  487 EDKRTKRGFSKRVTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQSPDRQRLQEQLVSLHYKKQLI 774
            E  R K   +K +T+ +L  +F+ PI +V++  G+  T++K++CR+ GIKRWP+RQIRS++KSI  +E    +AQ P+R + ++Q++SL  K+  +
Sbjct:  151 ESNRVKSLVTKHITIDELRAHFDRPIIDVAKDFGICITLMKKICRRNGIKRWPHRQIRSLSKSIASMEAAMLSAQGPERDKYRDQIISLKLKRDAV 246          
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Match: A0A835YN08_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN08_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.390e-12
Identity = 42/108 (38.89%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  517 KRVTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSI-KYVELLARTAQSPDRQRLQEQLVSLHYKKQLICQAATSGASAKVRKSILQMRP 837
            K  TL  L+  F  P+ +V+R   VS T++KRLCRK GI+RWP+RQIRS++K + +  E ++ T  + +   LQEQ+  L  K++L+ + A+SG  + +R ++    P
Sbjct:    1 KEPTLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 108          
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Match: A0A024FU44_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FU44_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.590e-12
Identity = 36/96 (37.50%), Postives = 67/96 (69.79%), Query Frame = 1
Query:  487 EDKRTKRGFSKRVTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQSPDRQRLQEQLVSLHYKKQLI 774
            E  R+K   +K+++L +L  +F+ PI EV++  G+  T++K++CR+ GIKRWP+RQIRS+ KSI  +E    +A   +++R Q+Q+++L  +++ +
Sbjct:   97 ESGRSKNSLTKQISLDELRAHFDRPIIEVAKKFGICITLMKKICRRNGIKRWPHRQIRSLTKSIAALEAAMLSANETEQERYQDQIMNLRRRRESV 192          
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Match: A0A1V9ZKB2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKB2_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.840e-12
Identity = 41/117 (35.04%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  469 QGMPAPEDKRTKRGFSKRVTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIKYVELLARTAQSPDRQRLQEQLVSLHYKKQLICQAATSGASAKVRKS 819
            +G       R K   +K +++ +L  +F+ PI EV+R  G+  T++K++CR+ GIKRWP+RQIRS+ KSI  +E    TA   +R++ +EQ+ SL  K+  +        S  + K+
Sbjct:   69 KGRRTAGQNRMKYHATKLISIEELREHFDQPIVEVARHFGICITLMKKVCRRNGIKRWPHRQIRSLTKSISSMEAAMMTANVSEREKYEEQIRSLVLKRDAVIADPNKEVSVSLAKT 185          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig842.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJT6_ECTSI1.360e-6992.48Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5K0H9_9PHAE3.580e-6891.73RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CMG7_9STRA5.110e-1737.21RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
A0A835Z1M5_9STRA2.370e-1638.60Putative NIN-like transcription factor n=1 Tax=Tri... [more]
H6WBB7_VAULI1.760e-1536.84Putative NIN-like transcription factor n=1 Tax=Vau... [more]
A0A835YTG3_9STRA1.680e-1435.09Putative NIN-like transcription factor n=1 Tax=Tri... [more]
A0A2D4BXJ0_PYTIN3.410e-1339.58Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A835YN08_9STRA1.390e-1238.89RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A024FU44_9STRA2.590e-1237.50Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A1V9ZKB2_9STRA5.840e-1235.04Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig842contigC-tenellus_contig842:8840..10223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog653948.CCA24539
PFAMsMyb_DNA-binding,RWP-RK
Model size887
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.36e-14
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota
Ec32 ortholog descriptionNIN-like transcription factor
Ec32 orthologEc-23_000070.1
Descriptionubiquitin modification-dependent histone binding
Cds size525
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790104.14918-UTR-C-tenellus_contig842:8839..91991680790104.14918-UTR-C-tenellus_contig842:8839..9199Choristocarpus tenellus KU2346UTRC-tenellus_contig842 8840..9199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790104.1609511-CDS-C-tenellus_contig842:9199..94931680790104.1609511-CDS-C-tenellus_contig842:9199..9493Choristocarpus tenellus KU2346CDSC-tenellus_contig842 9200..9493 +
1680790104.1719332-CDS-C-tenellus_contig842:9992..102231680790104.1719332-CDS-C-tenellus_contig842:9992..10223Choristocarpus tenellus KU2346CDSC-tenellus_contig842 9993..10223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig842.10.1prot_C-tenellus_contig842.10.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig842 9200..10223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig842.10.1

>prot_C-tenellus_contig842.10.1 ID=prot_C-tenellus_contig842.10.1|Name=mRNA_C-tenellus_contig842.10.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=175bp
MSISSPSLPGLTAVSSDQSITAASMAAAAAASAAGFQGMPAPEDKRTKRG
FSKRVTLRDLERYFEYPIEEVSRMMGVSTTIIKRLCRKYGIKRWPYRQIR
SVNKSIKYVELLARTAQSPDRQRLQEQLVSLHYKKQLICQAATSGASAKV
RKSILQMRPEELDADTLARTGMAAG
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mRNA from alignment at C-tenellus_contig842:8840..10223+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig842.10.1 ID=mRNA_C-tenellus_contig842.10.1|Name=mRNA_C-tenellus_contig842.10.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1384bp|location=Sequence derived from alignment at C-tenellus_contig842:8840..10223+ (Choristocarpus tenellus KU2346)
TATACACAAACCTTGGGGGAAGTTATGTAATCCTCACACCTACATAAATA ATAAAATAGATAAAATCGAAAACGATCAGACCCCAACTGAAAATATACCT AGAGCTTAAGGAAGAAATGTGACAAACTTGTGTCTGGAGAGGAAGGGCAA CAACAGACAGGCACAGTGTAGGGAGGAACCAAGGTCACCCCGCGTTGACC TAAAGGAAACGTAGTTGGCCGACTGAGAGGACGACTAGGACCAATTCCTG AACTGTAGGCTTAGTTAAGAAGCATCGGTTCCTCGAGAGGCTCGAGAGGC TGAAGTGTAGCCTGCGCTGACGCCCAAGAGTGGGGACGAAGTTGTGAAAC GGACGAGACCATGTCGATCTCGTCGCCCTCCCTCCCTGGGTTGACGGCGG TGTCGAGTGATCAGTCTATAACAGCCGCTTCGATGGCTGCTGCGGCTGCT GCATCGGCCGCAGGCTTCCAAGGGATGCCTGCCCCCGAAGACAAAAGGAC CAAACGGGGCTTCAGTAAACGTGTCACACTTCGTGACTTGGAGCGATACT TTGAGTATCCAATAGAGGAGGTTTCCCGAATGATGGGTGTCTCCACCACC ATCATCAAGCGCCTCTGCCGAAAATACGGAATAAAGAGGTGGCCCTATCG TCAGGTATGTTATTCTAGGTACACACTTTTTGGTGATATAATTGTGACCT GGAAGAAATCATTCCTCTCATCTCAAAGTTGTTGTTTGCCTCTGGGCTGT GCATTGTTCTTGAAGGCAGCGTCGGCAAAAGCTGTGACCAGCTCGAAAAG CTCTACGTTCCACAACGTGCTCAAAACAGATTTTTTTTCGGGGCCAAAAC AGGTTATTGCACTTTTTCGCCCCCAGTTATTGACCACATTGCCTCACTGC GTATTCCACCCCAGAACCTATAATCTTGCAACTTGAATCAACTCGAGCTC TGCGAATTCAGTTCCATGTTCTTCACACTCAGCGCTTCCTTGCTCACCAG TCGCTGTTAAGTTAAAGTTTCATCTCCCCAGTTTTTCTCATAGCTCTCGA CATAGGTGCAGCGGGACAACCATAACGACGCCCCTCTCACCGCGATCACC ACAACTTACCCTCTTGGCAACTGTTTACCTTTATCGTCGTTCTCACGTAC CAGATACGGAGTGTAAACAAATCCATCAAGTACGTAGAGCTCCTAGCCCG TACAGCACAGAGTCCTGACCGCCAGCGCCTGCAGGAGCAACTTGTCTCGT TGCACTACAAAAAGCAACTCATTTGCCAGGCCGCTACGTCAGGCGCATCC GCCAAGGTTCGTAAGTCTATCCTACAGATGCGACCAGAGGAGCTTGATGC TGACACCCTCGCGCGTACTGGCATGGCGGCTGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig842:8840..10223+

>mRNA_C-tenellus_contig842.10.1 ID=mRNA_C-tenellus_contig842.10.1|Name=mRNA_C-tenellus_contig842.10.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=525bp|location=Sequence derived from alignment at C-tenellus_contig842:8840..10223+ (Choristocarpus tenellus KU2346)
ATGTCGATCTCGTCGCCCTCCCTCCCTGGGTTGACGGCGGTGTCGAGTGA
TCAGTCTATAACAGCCGCTTCGATGGCTGCTGCGGCTGCTGCATCGGCCG
CAGGCTTCCAAGGGATGCCTGCCCCCGAAGACAAAAGGACCAAACGGGGC
TTCAGTAAACGTGTCACACTTCGTGACTTGGAGCGATACTTTGAGTATCC
AATAGAGGAGGTTTCCCGAATGATGGGTGTCTCCACCACCATCATCAAGC
GCCTCTGCCGAAAATACGGAATAAAGAGGTGGCCCTATCGTCAGATACGG
AGTGTAAACAAATCCATCAAGTACGTAGAGCTCCTAGCCCGTACAGCACA
GAGTCCTGACCGCCAGCGCCTGCAGGAGCAACTTGTCTCGTTGCACTACA
AAAAGCAACTCATTTGCCAGGCCGCTACGTCAGGCGCATCCGCCAAGGTT
CGTAAGTCTATCCTACAGATGCGACCAGAGGAGCTTGATGCTGACACCCT
CGCGCGTACTGGCATGGCGGCTGGG
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