mRNA_C-tenellus_contig8417.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8417.1.1
Unique NamemRNA_C-tenellus_contig8417.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Match: D7G7N2_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N2_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 2.340e-66
Identity = 132/296 (44.59%), Postives = 167/296 (56.42%), Query Frame = 1
Query:    1 LRVRFMGGGG-WVCVTPSPVLLAEECQAAIDEAEAMAAASISQGK----------GGWGTARHYSVPTTDVAVKDLPQTIAWFNRIMRKVVQPLVVTASLMGEGDY-------------------------------FSVAEKEVGVE---------------GQEIQQVK--DEGRGREEEVKVGQGKTSGLAPL--------IRVHDAFIVRYDAEAQQSLPTHTDQSEISLTITLNASTEYDGGGTWFEGLGCAVRPEEAGHVVIFPGGEVMHGGEAITRGVRYVIAVFMYEH 687
            L V FM G G WVC T  P+L A EC A ++EAE  A+                 GGWGT+RHY+VPTTDVAV++LP+T+AWFNR MR  + P V  A+ +G G +                                S A+ +   E               GQE +QV+  D+      E +  +G+     P         +RVHDAF+VRYDA AQ+SLP HTDQ E+SLTI+LN + EY+GGGTWFEGLG AVRPEEAGHVV+FPGG  +HGG  +TRGVRY++AVF+YEH
Sbjct:  256 LDVDFMTGHGEWVCSTRLPLLSASECSAIVNEAEEKASXXXXXXXXXXXXXXXXXGGWGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIGPTVAVAAALGGGVFERPGRRSGSLKRSPPVAEPHAQDEDFPARAVCSAADSDEAAESAEALRASASVEPENGQERRQVESDDDQXXXXXEAEEPRGRPGAPTPXXPALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGEYEGGGTWFEGLGSAVRPEEAGHVVVFPGGRTVHGGREVTRGVRYILAVFLYEH 551          
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Match: A0A6H5L5S3_9PHAE (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5S3_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.140e-65
Identity = 133/299 (44.48%), Postives = 172/299 (57.53%), Query Frame = 1
Query:    1 LRVRFMGGGG-WVCVTPSPVLLAEECQAAIDEAEAMAAASISQGK-----------GGWGTARHYSVPTTDVAVKDLPQTIAWFNRIMRKVVQPLVVTASLMGEGDY-------------------------------------------FSVAEKEVGVEGQEIQQVKD-EGRGREEEVKVGQGKTSG------LAPLIRVHDAFIVRYDAEAQQSLPTHTDQSEISLTITLNASTEYDGGGTWFEGLGCAVRPEEAGHVVIFPGGEVMHGGEAITRGVRYVIAVFMYEHRVEEEDED 711
            L V FM G G WVC T  P++ A EC A I+EAE  A                    GWGT+RHY+VPTTDVAV++LP+T+AWFNR MR  + P V  A+ +G G +                                            ++   E G +G++++   D EG+ RE E   G+           +   +RVHDAF+VRYDA AQ+SLP HTDQ E+SLTI+LN + EY+GGGTWFEGLG AVRPEEAGHVV+FPGG  +HGG+ +TRGVRY++AVF+YEH  EEE+E+
Sbjct:  698 LDVDFMAGDGEWVCSTRLPLISASECSAIINEAEEKAXXXXXXXXXXXXXXXXXXXSGWGTSRHYAVPTTDVAVRELPRTLAWFNRAMRTRIGPTVAVAAALGGGIFERPGRRSGSLELSPPVAKPHAKDEDFPAHAVCSAADSDEAAAAIALIAPEDGQKGRQVESDDDQEGQSREAEEPRGRAGAPXXXXXALMLRRLRVHDAFVVRYDAAAQRSLPLHTDQGELSLTISLNGTGEYEGGGTWFEGLGRAVRPEEAGHVVVFPGGRTVHGGKEVTRGVRYILAVFLYEHWEEEEEEE 996          
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Match: A0A7S4BI62_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BI62_CHRCT)

HSP 1 Score: 147 bits (372), Expect = 8.410e-39
Identity = 93/216 (43.06%), Postives = 118/216 (54.63%), Query Frame = 1
Query:   34 VCVTPSPVLLAEECQAAIDEAEAMAAASISQGKGGWGTARHYSVPTTDVAVKDLPQTIAWFNRIMRKVVQPLVVTASLMGEGDYFSVAEKEVGVEGQEIQQVKDEGRGREEEVKVGQGKTSGLAPLIRVHDAFIVRYDAEAQQSLPTHTDQSEISLTITLNASTEYDGGGTWFEGLGCAVRPEEAGHVVIFPGGEVMHGGEAITRGVRYVIAVFMY 681
            VC T +PVL   +C +AI  AE  A     Q +GGW TARHY+VPTTD+ V   P  +AWF  +MR  V P             F  +  EVG                              A  +RVHDAFIV+Y A AQ  LP H D+S++S+T+ LN S+EYDGGGT+F  L  AVRPE+ G ++ F G  ++HGGE I RGVRYV+A F+Y
Sbjct:  166 VCST-APVLSQAQCASAIAMAEEFA-----QTEGGWTTARHYAVPTTDLPVHKCPCLLAWFKELMRSAVAP-------------FLSSNFEVG------------------------------ADAVRVHDAFIVKYHAAAQARLPMHFDESQLSITLPLNESSEYDGGGTYFYALRRAVRPEQ-GQLLAFSGA-LLHGGEPIVRGVRYVLAAFLY 330          
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Match: A0A7S4F157_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F157_CHRCT)

HSP 1 Score: 147 bits (372), Expect = 2.450e-38
Identity = 93/216 (43.06%), Postives = 118/216 (54.63%), Query Frame = 1
Query:   34 VCVTPSPVLLAEECQAAIDEAEAMAAASISQGKGGWGTARHYSVPTTDVAVKDLPQTIAWFNRIMRKVVQPLVVTASLMGEGDYFSVAEKEVGVEGQEIQQVKDEGRGREEEVKVGQGKTSGLAPLIRVHDAFIVRYDAEAQQSLPTHTDQSEISLTITLNASTEYDGGGTWFEGLGCAVRPEEAGHVVIFPGGEVMHGGEAITRGVRYVIAVFMY 681
            VC T +PVL   +C +AI  AE  A     Q +GGW TARHY+VPTTD+ V   P  +AWF  +MR  V P             F  +  EVG                              A  +RVHDAFIV+Y A AQ  LP H D+S++S+T+ LN S+EYDGGGT+F  L  AVRPE+ G ++ F G  ++HGGE I RGVRYV+A F+Y
Sbjct:  224 VCST-APVLSQAQCASAIAMAEEFA-----QTEGGWTTARHYAVPTTDLPVHKCPCLLAWFKELMRSAVAP-------------FLSSNFEVG------------------------------ADAVRVHDAFIVKYHAAAQARLPMHFDESQLSITLPLNESSEYDGGGTYFYALRRAVRPEQ-GQLLAFSGA-LLHGGEPIVRGVRYVLAAFLY 388          
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Match: R1G8J0_EMIHU (Fe2OG dioxygenase domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1G8J0_EMIHU)

HSP 1 Score: 144 bits (362), Expect = 1.390e-35
Identity = 90/215 (41.86%), Postives = 111/215 (51.63%), Query Frame = 1
Query:   34 VCVTPSPVLLAEECQAAIDEAEAMAAASISQGKGGWGTARHYSVPTTDVAVKDLPQTIAWFNRIMRKVVQPLVVTASLMGEGDYFSVAEKEVGVEGQEIQQVKDEGRGREEEVKVGQGKTSGLAPLIRVHDAFIVRYDAEAQQSLPTHTDQSEISLTITLNASTEYDGGGTWFEGLGCAVRPEEAGHVVIFPGGEVMHGGEAITRGVRYVIAVFM 678
            V V+  P+L    C+  I  AEA AA S     GGW TARH+SV TTD+ +  L + +  FN  +R ++ P +                                             + + LA  +RV D F+VRYDA  Q SLPTHTDQS +S TI LN   EYDGGGTWF GLG AV    AGH V+FPG +V HGG  ITRGVRY+I +FM
Sbjct:  798 VFVSQRPLLPKPTCERYIAAAEAWAARS-----GGWTTARHHSVATTDIPLTSLDELLPSFNEALRTLLLPALSACY----------------------------------------PEAAPLASSLRVLDCFLVRYDATKQASLPTHTDQSLLSFTIALNDPGEYDGGGTWFRGLGRAVDAPAAGHAVLFPG-KVEHGGHPITRGVRYIIVLFM 966          
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Match: A0A7S2HJP0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HJP0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.340e-34
Identity = 87/237 (36.71%), Postives = 120/237 (50.63%), Query Frame = 1
Query:   34 VCVTPSPVLLAEECQAAIDEAEAMAAASISQGKGGWGTARHYSVPTTDVAVKDLPQTIAWFNRIMRKVVQPLVVTASLMGEGDYFSVAEKEVGVEGQEIQQVKDEGRGREEEVKVGQGKTSGLAPLIRVHDAFIVRYDAEAQQSLPTHTDQSEISLTITLNAST---------------------EYDGGGTWFEGLGCAVRPEEAGHVVIFPGGEVMHGGEAITRGVRYVIAVFMY 681
            V V+  PV+   EC+  +     +AA + +Q  GGW T+RHYSVPTTD+ V+ LP+ + WF    RK + P++ T         + V  + +GV                                   +DAFIV+Y AEAQ+ LP HTDQS +SLTI LN S                       ++GGGT+FE +G  + P  AG +V FPG E+ HGG+ IT+GVRY+IAVF+Y
Sbjct:   21 VFVSKGPVISESECRDVV-----VAANAYTQSAGGWATSRHYSVPTTDIPVRALPRVLDWFRSCCRKRLFPMLETL--------YGVPPRRLGV-----------------------------------NDAFIVKYTAEAQRHLPLHTDQSALSLTIALNGSGGDDHHPSHEGGDADGPEDAVGSFEGGGTYFEQIGRPLCPC-AGGLVAFPG-ELSHGGQPITKGVRYIIAVFLY 207          
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Match: A0A7S2ST73_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST73_9STRA)

HSP 1 Score: 134 bits (336), Expect = 4.540e-34
Identity = 88/231 (38.10%), Postives = 118/231 (51.08%), Query Frame = 1
Query:   22 GGGWVCVTPSPVLLAEECQAAIDEAEAMAAASISQGKGGWGTARHYSVPTTDVAVKDLPQTIAWFNRIMRKVVQPLVVTASLMGEGDYFSVAEKEVGVEGQEIQQVKDEGRGREEEVKVGQGKTSGLAPLIRVHDAFIVRYDAEAQQSLPTHTDQSEISLTITLNASTEYDGGGTWFEGLGCAVRPEE-----------AGHVVIFPGGEVMHGGEAITRGVRYVIAVFMY 681
            GG  V V  +P++  EEC  AI  AE  AA++     GGW TARH S PTTD+A+KD+P  + WFN  +  V+ P++  AS   E                                          A  IRVHDAFIV+Y++  Q SL TH D+S  S TI LN S EY+GGGT+FE +  +   E+           AG +V F GG++ HGG+AI+ G RY+I +F+Y
Sbjct:  119 GGSLVHVCKTPIIPKEECAWAIQAAEDHAAST-----GGWTTARHASAPTTDMAIKDVPVLLEWFNEKLETVLFPML--ASRFPE--------------------------------------LIPSADCIRVHDAFIVKYESTGQASLATHQDESSFSFTIALNDSDEYEGGGTYFESIRKSDAAEDQPYSPMALNADAGGIVCF-GGKIRHGGQAISSGRRYIIPLFVY 303          
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Match: F0Y9Z7_AURAN (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Z7_AURAN)

HSP 1 Score: 138 bits (348), Expect = 1.030e-33
Identity = 90/225 (40.00%), Postives = 120/225 (53.33%), Query Frame = 1
Query:   31 WVCVTPSPVLLAEECQAAIDEAEAMAAASISQGKGGWGTARHYSVPTTDVAVKDLPQTIAWFNRIMRKVVQPLVVTASLMGEGDYFSVAEKEVGVEGQEIQQVKDEGRGREEEVKVGQGKTSGLAPL-IRVHDAFIVRYDAEAQQSLPTHTDQSEISLTITLNASTEYDGGGTWFEGLGCAVRPEEAGHVVIFPGGEVMHGGEAITRGVRYVIAVFMYEHRVEEE 702
            +V     PV+ A  C  AI  AEA A    S G GGW TARH++VPTTDV V+++P  + WFN  +R  + P +                                            G   GL P  +RV DAF+V+Y A AQ+SLP H+DQS+IS+T+ LN+S +YDGGGT+F  L  AV   +AG +V FPG  + H G AITRG R+V+  F+YE+R  +E
Sbjct:  724 YVYAFDEPVVPAASCADAIAIAEAHA----SHG-GGWTTARHFAVPTTDVPVREVPALLKWFNDALRSSIFPAL--------------------------------------------GALYGLDPARLRVIDAFLVKYSAAAQRSLPLHSDQSQISITLPLNSSADYDGGGTYFHDLRQAVN-RDAGGLVAFPG-FLPHAGHAITRGTRFVVVAFLYEYREADE 897          
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Match: A0A830H9E2_9CHLO (Uncharacterized protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H9E2_9CHLO)

HSP 1 Score: 128 bits (321), Expect = 3.280e-30
Identity = 87/223 (39.01%), Postives = 117/223 (52.47%), Query Frame = 1
Query:   34 VCVTPSPVLLAEECQAAIDEAEAMAAASISQGKGGWGTARHYSVPTTDVAVKDLPQTIAWFNRIMRKVVQPLVVTASLMGEGDYFSVAEKEVGVEGQEIQQVKDEGRGREEEVKVGQGKTSGLAPLIRVHDAFIVRYDAEAQQSLPTHTDQSEISLTITLNASTEYDGGGTWFEGL-------GCAVRPEEAGHVVIFPGGEVMHGGEAITRGVRYVIAVFMY 681
            V  T  P L +EEC   ID AEA AA    QG G W TARHYSVPTTD+ +  +P+ ++ FN  M++ +  +++                                   E+  ++  G+T      + VHDAF+VRYD E + +LP HTD+SE+SLTI LN +    GGGT+F          G  VRP+  GHVV F GG   H GE ++RGVRY+IA F+Y
Sbjct:  527 VFCTIRPALTSEECTRIIDLAEARAA----QGNG-WTTARHYSVPTTDLPLDSIPEALSIFNAAMKRSINAMLL-----------------------------------EQFPQLVNGRTR-----VAVHDAFVVRYD-EHRNALPEHTDESEVSLTIALNDAAV--GGGTYFPSTASTVPFDGTVVRPD-VGHVVSFAGGTTRHAGEPVSRGVRYIIAAFLY 700          
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Match: A0A813I8M0_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I8M0_POLGL)

HSP 1 Score: 114 bits (284), Expect = 3.470e-26
Identity = 76/215 (35.35%), Postives = 106/215 (49.30%), Query Frame = 1
Query:   58 LLAEECQAAIDEAEAMAAASISQGKGGWGTARHYSVPTTDVAVKDLPQTIAWFNRIMRKVVQP-LVVTASLMGEGDYFSVAEKEVGVEGQEIQQVKDEGRGREEEVKVGQGKTSGLAPLIRVHDAFIVRYDAE--AQQSLPTHTDQSEISLTITLN----ASTEYDGGGTWFEGLGCAVRPEEAGHVVIFPGGEVMHGGEAITRGVRYVIAVFMY 681
            L AEEC+  +   EA A++     +GGWGT RH SV TTDVAV+D+PQ   W   +M   + P L +    + +G        ++G +G+ +                            R+HDAF+VRYDAE     SLP H+D S +S +I LN        + GGGTWF+ LG  V    AG  V F G  + H G  I RG R+++ +F+Y
Sbjct:  124 LTAEECRGVVGLCEAHASS-----RGGWGTVRHSSVKTTDVAVEDIPQLRPWLRTLMATRLAPFLAMCYPRLADGS-------DLGPQGERV----------------------------RIHDAFVVRYDAEKDGSLSLPAHSDISTLSFSIALNDGDGEGDAFGGGGTWFKALGGRVINAAAGKAVAFAG-PLRHAGHPIERGTRFILVLFLY 297          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8417.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7N2_ECTSI2.340e-6644.59Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A6H5L5S3_9PHAE1.140e-6544.48Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A7S4BI62_CHRCT8.410e-3943.06Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4F157_CHRCT2.450e-3843.06Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
R1G8J0_EMIHU1.390e-3541.86Fe2OG dioxygenase domain-containing protein n=3 Ta... [more]
A0A7S2HJP0_9STRA3.340e-3436.71Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2ST73_9STRA4.540e-3438.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0Y9Z7_AURAN1.030e-3340.00Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A830H9E2_9CHLO3.280e-3039.01Uncharacterized protein n=2 Tax=Pycnococcus provas... [more]
A0A813I8M0_POLGL3.470e-2635.35Hypothetical protein n=2 Tax=Polarella glacialis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8417contigC-tenellus_contig8417:4..723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G7N2
PFAMs2OG-FeII_Oxy_3,SET
Model size720
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.46e-66
EggNOG OGsKOG1971@1|root,KOG1971@2759|Eukaryota
Descriptionprocollagen-lysine 5-dioxygenase activity
Cds size705
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790103.8681464-UTR-C-tenellus_contig8417:3..181680790103.8681464-UTR-C-tenellus_contig8417:3..18Choristocarpus tenellus KU2346UTRC-tenellus_contig8417 4..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790103.8809016-CDS-C-tenellus_contig8417:18..7231680790103.8809016-CDS-C-tenellus_contig8417:18..723Choristocarpus tenellus KU2346CDSC-tenellus_contig8417 19..723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8417.1.1prot_C-tenellus_contig8417.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8417 19..723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8417.1.1

>prot_C-tenellus_contig8417.1.1 ID=prot_C-tenellus_contig8417.1.1|Name=mRNA_C-tenellus_contig8417.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=235bp
MGGGGWVCVTPSPVLLAEECQAAIDEAEAMAAASISQGKGGWGTARHYSV
PTTDVAVKDLPQTIAWFNRIMRKVVQPLVVTASLMGEGDYFSVAEKEVGV
EGQEIQQVKDEGRGREEEVKVGQGKTSGLAPLIRVHDAFIVRYDAEAQQS
LPTHTDQSEISLTITLNASTEYDGGGTWFEGLGCAVRPEEAGHVVIFPGG
EVMHGGEAITRGVRYVIAVFMYEHRVEEEDEDGDD
back to top

mRNA from alignment at C-tenellus_contig8417:4..723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8417.1.1 ID=mRNA_C-tenellus_contig8417.1.1|Name=mRNA_C-tenellus_contig8417.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=720bp|location=Sequence derived from alignment at C-tenellus_contig8417:4..723+ (Choristocarpus tenellus KU2346)
TTGAGGGTAAGGTTCATGGGCGGGGGAGGATGGGTTTGTGTTACCCCATC TCCTGTCCTCCTGGCAGAGGAATGCCAAGCAGCAATTGACGAGGCAGAGG CCATGGCGGCAGCGTCTATTTCACAAGGTAAGGGTGGTTGGGGCACAGCA CGGCACTACAGTGTGCCTACAACTGATGTGGCGGTAAAGGATCTCCCACA AACTATTGCATGGTTTAACCGGATAATGAGGAAGGTTGTGCAGCCCCTGG TCGTGACAGCGTCTTTGATGGGGGAAGGAGACTACTTTTCTGTTGCAGAG AAAGAGGTGGGGGTGGAAGGTCAAGAGATACAACAGGTGAAAGACGAGGG AAGAGGAAGGGAAGAAGAGGTCAAGGTGGGGCAGGGGAAGACTTCAGGTT TAGCGCCACTGATACGTGTACACGATGCTTTCATTGTGCGATACGATGCA GAGGCCCAGCAGTCCTTACCCACCCACACAGACCAAAGTGAGATCTCTCT CACAATTACCCTCAATGCCTCAACTGAGTATGATGGGGGAGGCACTTGGT TTGAGGGGCTTGGTTGTGCTGTGCGACCAGAAGAAGCTGGGCATGTTGTT ATTTTTCCAGGGGGGGAGGTGATGCATGGCGGTGAAGCTATCACTCGGGG GGTTAGGTATGTAATTGCTGTGTTCATGTACGAGCACAGGGTTGAGGAAG AAGATGAGGATGGTGATGAT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8417:4..723+

>mRNA_C-tenellus_contig8417.1.1 ID=mRNA_C-tenellus_contig8417.1.1|Name=mRNA_C-tenellus_contig8417.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=705bp|location=Sequence derived from alignment at C-tenellus_contig8417:4..723+ (Choristocarpus tenellus KU2346)
ATGGGCGGGGGAGGATGGGTTTGTGTTACCCCATCTCCTGTCCTCCTGGC
AGAGGAATGCCAAGCAGCAATTGACGAGGCAGAGGCCATGGCGGCAGCGT
CTATTTCACAAGGTAAGGGTGGTTGGGGCACAGCACGGCACTACAGTGTG
CCTACAACTGATGTGGCGGTAAAGGATCTCCCACAAACTATTGCATGGTT
TAACCGGATAATGAGGAAGGTTGTGCAGCCCCTGGTCGTGACAGCGTCTT
TGATGGGGGAAGGAGACTACTTTTCTGTTGCAGAGAAAGAGGTGGGGGTG
GAAGGTCAAGAGATACAACAGGTGAAAGACGAGGGAAGAGGAAGGGAAGA
AGAGGTCAAGGTGGGGCAGGGGAAGACTTCAGGTTTAGCGCCACTGATAC
GTGTACACGATGCTTTCATTGTGCGATACGATGCAGAGGCCCAGCAGTCC
TTACCCACCCACACAGACCAAAGTGAGATCTCTCTCACAATTACCCTCAA
TGCCTCAACTGAGTATGATGGGGGAGGCACTTGGTTTGAGGGGCTTGGTT
GTGCTGTGCGACCAGAAGAAGCTGGGCATGTTGTTATTTTTCCAGGGGGG
GAGGTGATGCATGGCGGTGAAGCTATCACTCGGGGGGTTAGGTATGTAAT
TGCTGTGTTCATGTACGAGCACAGGGTTGAGGAAGAAGATGAGGATGGTG
ATGAT
back to top