mRNA_C-tenellus_contig8410.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8410.4.1
Unique NamemRNA_C-tenellus_contig8410.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Match: D8LU38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU38_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.530e-18
Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    4 FRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAGVSPEG 165
            +  GIS  LWS+FPM+Y  WD +A+DL++NM VPIDN+ISRGTD F+AG S EG
Sbjct:   17 YGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRSAEG 70
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BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Match: A0A6H5JN40_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN40_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.430e-17
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    4 FRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAGVSPEGRRW 174
            +  GIS  LWS+FPM+Y  WD +A+DL++NM VPIDN+ISRGTD F+AG S EG R+
Sbjct:  677 YGAGISEQLWSVFPMLYRTWDKWAFDLISNMAVPIDNYISRGTDVFIAGRSAEGDRY 733
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BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Match: A0A5J4YB94_9CHLO (Putative importin-7 protein (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YB94_9CHLO)

HSP 1 Score: 63.2 bits (152), Expect = 3.630e-10
Identity = 27/53 (50.94%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    4 FRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAGVSPE 162
            F P IS  +WSL+P++++A++ +A D L N++VP+DNFIS+GT+ FLA  SP+
Sbjct:  647 FSPEISPRMWSLWPLLHSAYNDWAMDYLDNILVPLDNFISKGTEVFLACKSPD 699
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BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Match: A0A3L6ERS1_MAIZE (Importin beta-like SAD2 n=4 Tax=Zea mays TaxID=4577 RepID=A0A3L6ERS1_MAIZE)

HSP 1 Score: 63.2 bits (152), Expect = 3.630e-10
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    4 FRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAGVSPEGRR--WD 177
            F P IS D+WSL+P++  A + +A D   N++VP+DN+ISRGTD FLA   P+ ++  WD
Sbjct:  675 FSPTISLDMWSLWPLMMEALNDWAIDFFENILVPLDNYISRGTDIFLASKDPDYQQSLWD 734
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BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Match: A0A0E0JZS8_ORYPU (Importin N-terminal domain-containing protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0JZS8_ORYPU)

HSP 1 Score: 62.4 bits (150), Expect = 6.780e-10
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 FRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAGVSPE 162
            F P IS D+WSL+P++  A + +A D   N++VP+DN++SRGTD FLA   P+
Sbjct:  648 FSPSISLDMWSLWPLMMEALNDWAIDFFENILVPLDNYVSRGTDHFLACKDPD 700
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BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Match: A0A1E5UQT5_9POAL (Importin beta-like SAD2 n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5UQT5_9POAL)

HSP 1 Score: 62.4 bits (150), Expect = 6.780e-10
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 FRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAGVSPE 162
            + P IS D+WSL+P+I  A + +A D   N++VP+DN++SRGTD FLA   P+
Sbjct:  679 YSPSISLDMWSLWPLIMEALNDWAIDFFENILVPLDNYVSRGTDHFLACKDPD 731
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BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Match: A0A0A9IEK0_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9IEK0_ARUDO)

HSP 1 Score: 61.2 bits (147), Expect = 1.720e-9
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 FRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAGVSPE 162
            F P +S D+WSL+P++  A + +A D   N++VP+DN+ISRGTD FLA   P+
Sbjct:  278 FSPTLSLDMWSLWPLMMEALNDWAIDFFENILVPLDNYISRGTDHFLACKDPD 330
[Close]
BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Match: A0A0E0G6J9_ORYNI (Importin N-terminal domain-containing protein n=3 Tax=Oryzeae TaxID=147380 RepID=A0A0E0G6J9_ORYNI)

HSP 1 Score: 61.2 bits (147), Expect = 1.730e-9
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 FRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAGVSPE 162
            F P IS D+WSL+P++  A + +A D   N++VP+DN++SRG+D FLA  +P+
Sbjct:  661 FSPSISLDMWSLWPLMMEALNDWAIDFFENILVPLDNYVSRGSDHFLACKNPD 713
[Close]
BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Match: A0A0E0NET8_ORYRU (Importin N-terminal domain-containing protein n=1 Tax=Oryza rufipogon TaxID=4529 RepID=A0A0E0NET8_ORYRU)

HSP 1 Score: 61.2 bits (147), Expect = 1.730e-9
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 FRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAGVSPE 162
            F P IS D+WSL+P++  A + +A D   N++VP+DN++SRG+D FLA  +P+
Sbjct:  661 FSPSISLDMWSLWPLMMEALNDWAIDFFENILVPLDNYVSRGSDHFLACKNPD 713
[Close]
BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Match: A0A0D9YS79_9ORYZ (Importin N-terminal domain-containing protein n=1 Tax=Oryza glumipatula TaxID=40148 RepID=A0A0D9YS79_9ORYZ)

HSP 1 Score: 61.2 bits (147), Expect = 1.730e-9
Identity = 25/53 (47.17%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 FRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAGVSPE 162
            F P IS D+WSL+P++  A + +A D   N++VP+DN++SRG+D FLA  +P+
Sbjct:  661 FSPSISLDMWSLWPLMMEALNDWAIDFFENILVPLDNYVSRGSDHFLACKNPD 713
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8410.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU38_ECTSI1.530e-1862.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN40_9PHAE4.430e-1761.40Importin N-terminal domain-containing protein n=2 ... [more]
A0A5J4YB94_9CHLO3.630e-1050.94Putative importin-7 protein (Fragment) n=1 Tax=Tre... [more]
A0A3L6ERS1_MAIZE3.630e-1048.33Importin beta-like SAD2 n=4 Tax=Zea mays TaxID=457... [more]
A0A0E0JZS8_ORYPU6.780e-1049.06Importin N-terminal domain-containing protein n=1 ... [more]
A0A1E5UQT5_9POAL6.780e-1049.06Importin beta-like SAD2 n=1 Tax=Dichanthelium olig... [more]
A0A0A9IEK0_ARUDO1.720e-949.06Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
A0A0E0G6J9_ORYNI1.730e-947.17Importin N-terminal domain-containing protein n=3 ... [more]
A0A0E0NET8_ORYRU1.730e-947.17Importin N-terminal domain-containing protein n=1 ... [more]
A0A0D9YS79_9ORYZ1.730e-947.17Importin N-terminal domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8410contigC-tenellus_contig8410:5983..6159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDH6
Preferred nameNMD5
PFAMsCse1,IBN_N,Xpo1
Model size177
Max annot lvl2759|Eukaryota
KEGG koko:K20223
KEGG TC1.I.1
KEGG Pathwayko04013,map04013
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016441,GO:0016458,GO:0017038,GO:0017076,GO:0019001,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031047,GO:0031224,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035194,GO:0035195,GO:0035280,GO:0035639,GO:0036094,GO:0040029,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061608,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070922,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
Exons1
Evalue3.89e-18
EggNOG OGsCOG4581@1|root,KOG1991@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-16_000100.1
DescriptionRan GTPase binding
Cds size177
COG categoryL
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790103.7300215-CDS-C-tenellus_contig8410:5982..61591680790103.7300215-CDS-C-tenellus_contig8410:5982..6159Choristocarpus tenellus KU2346CDSC-tenellus_contig8410 5983..6159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8410.4.1prot_C-tenellus_contig8410.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8410 5983..6159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8410.4.1

>prot_C-tenellus_contig8410.4.1 ID=prot_C-tenellus_contig8410.4.1|Name=mRNA_C-tenellus_contig8410.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=59bp
LFRPGISNDLWSLFPMIYNAWDSFAYDLLTNMVVPIDNFISRGTDQFLAG
VSPEGRRWD
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mRNA from alignment at C-tenellus_contig8410:5983..6159-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8410.4.1 ID=mRNA_C-tenellus_contig8410.4.1|Name=mRNA_C-tenellus_contig8410.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=177bp|location=Sequence derived from alignment at C-tenellus_contig8410:5983..6159- (Choristocarpus tenellus KU2346)
TTGTTCAGGCCGGGCATCAGCAATGACCTGTGGAGTCTGTTCCCTATGAT
TTACAACGCATGGGACTCCTTTGCATACGATCTGTTGACCAACATGGTGG
TACCCATAGATAATTTTATCAGCAGGGGAACAGATCAATTCCTGGCAGGT
GTATCACCAGAAGGTCGCAGGTGGGAT
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Coding sequence (CDS) from alignment at C-tenellus_contig8410:5983..6159-

>mRNA_C-tenellus_contig8410.4.1 ID=mRNA_C-tenellus_contig8410.4.1|Name=mRNA_C-tenellus_contig8410.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=177bp|location=Sequence derived from alignment at C-tenellus_contig8410:5983..6159- (Choristocarpus tenellus KU2346)
TTGTTCAGGCCGGGCATCAGCAATGACCTGTGGAGTCTGTTCCCTATGAT
TTACAACGCATGGGACTCCTTTGCATACGATCTGTTGACCAACATGGTGG
TACCCATAGATAATTTTATCAGCAGGGGAACAGATCAATTCCTGGCAGGT
GTATCACCAGAAGGTCGCAGGTGGGAT
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