mRNA_C-tenellus_contig8409.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig8409.1.1
Unique NamemRNA_C-tenellus_contig8409.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Match: UPI0009010B65 (uncharacterized protein LOC109162697 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI0009010B65)

HSP 1 Score: 106 bits (264), Expect = 1.950e-22
Identity = 72/218 (33.03%), Postives = 106/218 (48.62%), Query Frame = 1
Query:   34 DHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALAIVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGERQSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGLGDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGTSGYYKSSPG--HKLASRGKQCIMVGMSDN 681
            DH+   ++  T R F  I  D+ GP  VKSL G  Y L IVDD + +TWI LL+ KS     ++ + K         I  +R D G E +     D  +E G+V + +    PQ N+V E +   + S A A  + + +   +  WG    ++AYI+NR  +      SPY  L+ +  +L     FG   Y  + P   HK+ASR K+C+ VGM  N
Sbjct:  558 DHLFPLSSTTTNRCFDLIHTDIWGPFVVKSLEGERYFLTIVDDYSRYTWIHLLKTKSETRAVIKSFHKYVQTQYSANIKILRSDNGMEFK---MADFFSENGIVHQTSCVYTPQQNAVVERKHQHLLSVARALRFQSNM--PLEFWGLCILYAAYIINRVPSAVIDWDSPYQRLHNKEPNLDKLRVFGCLSYAATLPQSRHKMASRSKKCVFVGMPAN 770          
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Match: Q7X7K3_ORYSJ (OSJNBb0046P18.1 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7X7K3_ORYSJ)

HSP 1 Score: 105 bits (263), Expect = 2.830e-22
Identity = 67/228 (29.39%), Postives = 113/228 (49.56%), Query Frame = 1
Query:    1 CIGCAKGIRIKDHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALAIVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGERQSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGLGDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGTSGYYK-SSPG-HKLASRGKQCIMVGMSD 678
            C GC  G + +   P  +   T      +  DL  P    +  G  Y L +VDD++ + W+ L++ K  AA A++ +    V+ +GR++H +R D GGE  S EF +    +GV +++T    PQ N V E R   + + A + + + G+  + W  GEA + + ++LNRS        +PY A YG+  ++     FG  G+ K + PG  KL  R    +++G  +
Sbjct:  594 CDGCLLGKQRRAAFPAQSKYCTNEHLVLVHGDLCRPIEPATPAGNRYFLLLVDDMSRYMWLTLIRSKDEAANAIKHFQARAVVETGRKLHALRTDRGGEFTSIEFGEYYANLGVGRKLTVPYSPQQNGVVERRNQTIVATARSMMKAKGVPGRFW--GEAMSTTVFLLNRSPKKSLDNQTPYEAWYGQRPAVHFLRTFGCMGHVKITKPGLKKLNDRSVPMVLLGYEE 819          
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Match: A0A2X0NUV7_9BASI (BQ5605_C129g13358 protein n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0NUV7_9BASI)

HSP 1 Score: 103 bits (256), Expect = 2.260e-21
Identity = 72/242 (29.75%), Postives = 109/242 (45.04%), Query Frame = 1
Query:    1 CIGCAKGIRIKDHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALAIVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGERQSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGLGDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGTSGYYKSSPG--HKLASRGKQCIMVGMSDNQPRGTFRVLDFST 720
            C  C  G       P   + R+ +P   + +DL       SLGGA+YAL IVDD T + W   +  KS+   A + W       S R++  +R D GGE  S EF   + E G+ ++++    PQ N VAE     +  G  + ++ +GL     LW EA     Y+ NRS    N   +P+   +G   S      FG   +  ++     KL  RG   + VG  D + +G +R+ D +T
Sbjct:  216 CDTCQAGKITHHPFPTVASNRSAQPLDRVHMDLLAFDGAVSLGGAKYALVIVDDYTRYLWAIPMSHKSDTFAAFKSWLAKVERSSSRKLLAVRSDNGGEFLSNEFSSFLEEQGITRQLSIPDTPQQNGVAERANRSITEGVRSMLHQSGLSHA--LWAEALATYVYVKNRSPHSANSGVTPHTRWHGSKPSAGHLRVFGCRAWKAATTEARSKLDPRGIPLVFVGY-DLESKG-YRLFDPAT 453          
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Match: A0A2X0LU03_9BASI (BQ5605_C010g06158 protein n=2 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0LU03_9BASI)

HSP 1 Score: 103 bits (256), Expect = 2.340e-21
Identity = 72/242 (29.75%), Postives = 109/242 (45.04%), Query Frame = 1
Query:    1 CIGCAKGIRIKDHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALAIVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGERQSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGLGDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGTSGYYKSSPG--HKLASRGKQCIMVGMSDNQPRGTFRVLDFST 720
            C  C  G       P   + R+ +P   + +DL       SLGGA+YAL IVDD T + W   +  KS+   A + W       S R++  +R D GGE  S EF   + E G+ ++++    PQ N VAE     +  G  + ++ +GL     LW EA     Y+ NRS    N   +P+   +G   S      FG   +  ++     KL  RG   + VG  D + +G +R+ D +T
Sbjct:  259 CDTCQAGKITHHPFPTVASNRSAQPLDRVHMDLLAFDGAVSLGGAKYALVIVDDYTRYLWAIPMSHKSDTFAAFKSWLAKVERSSSRKLLAVRSDNGGEFLSNEFSSFLEEQGITRQLSIPDTPQQNGVAERANRSITEGVRSMLHQSGLSHA--LWAEALATYVYVKNRSPHSANSGVTPHTRWHGSKPSAGHLRVFGCRAWKAATTEARSKLDPRGIPLVFVGY-DLESKG-YRLFDPAT 496          
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Match: A0A2X0PHF2_9BASI (BQ5605_C002g01153 protein n=5 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0PHF2_9BASI)

HSP 1 Score: 103 bits (256), Expect = 2.380e-21
Identity = 72/242 (29.75%), Postives = 109/242 (45.04%), Query Frame = 1
Query:    1 CIGCAKGIRIKDHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALAIVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGERQSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGLGDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGTSGYYKSSPG--HKLASRGKQCIMVGMSDNQPRGTFRVLDFST 720
            C  C  G       P   + R+ +P   + +DL       SLGGA+YAL IVDD T + W   +  KS+   A + W       S R++  +R D GGE  S EF   + E G+ ++++    PQ N VAE     +  G  + ++ +GL     LW EA     Y+ NRS    N   +P+   +G   S      FG   +  ++     KL  RG   + VG  D + +G +R+ D +T
Sbjct:  396 CDTCQAGKITHHPFPTVASNRSAQPLDRVHMDLLAFDGAVSLGGAKYALVIVDDYTRYLWAIPMSHKSDTFAAFKSWLAKVERSSSRKLLAVRSDNGGEFLSNEFSSFLEEQGITRQLSIPDTPQQNGVAERANRSITEGVRSMLHQSGLSHA--LWAEALATYVYVKNRSPHSANSGVTPHTRWHGSKPSAGHLRVFGCRAWKAATTEARSKLDPRGIPLVFVGY-DLESKG-YRLFDPAT 633          
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Match: A0A2X0M6Q8_9BASI (BQ5605_C001g00248 protein n=3 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0M6Q8_9BASI)

HSP 1 Score: 103 bits (256), Expect = 2.380e-21
Identity = 72/242 (29.75%), Postives = 109/242 (45.04%), Query Frame = 1
Query:    1 CIGCAKGIRIKDHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALAIVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGERQSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGLGDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGTSGYYKSSPG--HKLASRGKQCIMVGMSDNQPRGTFRVLDFST 720
            C  C  G       P   + R+ +P   + +DL       SLGGA+YAL IVDD T + W   +  KS+   A + W       S R++  +R D GGE  S EF   + E G+ ++++    PQ N VAE     +  G  + ++ +GL     LW EA     Y+ NRS    N   +P+   +G   S      FG   +  ++     KL  RG   + VG  D + +G +R+ D +T
Sbjct:  396 CDTCQAGKITHHPFPTVASNRSAQPLDRVHMDLLAFDGAVSLGGAKYALVIVDDYTRYLWAIPMSHKSDTFAAFKSWLAKVERSSSRKLLAVRSDNGGEFLSNEFSSFLEEQGITRQLSIPDTPQQNGVAERANRSITEGVRSMLHQSGLSHA--LWAEALATYVYVKNRSPHSANSGVTPHTRWHGSKPSAGHLRVFGCRAWKAATTEARSKLDPRGIPLVFVGY-DLESKG-YRLFDPAT 633          
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Match: A0A2X0M6Y3_9BASI (BQ5605_C001g00217 protein n=8 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0M6Y3_9BASI)

HSP 1 Score: 103 bits (256), Expect = 2.380e-21
Identity = 72/242 (29.75%), Postives = 109/242 (45.04%), Query Frame = 1
Query:    1 CIGCAKGIRIKDHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALAIVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGERQSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGLGDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGTSGYYKSSPG--HKLASRGKQCIMVGMSDNQPRGTFRVLDFST 720
            C  C  G       P   + R+ +P   + +DL       SLGGA+YAL IVDD T + W   +  KS+   A + W       S R++  +R D GGE  S EF   + E G+ ++++    PQ N VAE     +  G  + ++ +GL     LW EA     Y+ NRS    N   +P+   +G   S      FG   +  ++     KL  RG   + VG  D + +G +R+ D +T
Sbjct:  396 CDTCQAGKITHHPFPTVASNRSAQPLDRVHMDLLAFDGAVSLGGAKYALVIVDDYTRYLWAIPMSHKSDTFAAFKSWLAKVERSSSRKLLAVRSDNGGEFLSNEFSSFLEEQGITRQLSIPDTPQQNGVAERANRSITEGVRSMLHQSGLSHA--LWAEALATYVYVKNRSPHSANSGVTPHTRWHGSKPSAGHLRVFGCRAWKAATTEARSKLDPRGIPLVFVGY-DLESKG-YRLFDPAT 633          
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Match: A0A2X0M314_9BASI (BQ5605_C002g01370 protein n=3 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0M314_9BASI)

HSP 1 Score: 103 bits (256), Expect = 2.460e-21
Identity = 72/242 (29.75%), Postives = 109/242 (45.04%), Query Frame = 1
Query:    1 CIGCAKGIRIKDHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALAIVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGERQSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGLGDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGTSGYYKSSPG--HKLASRGKQCIMVGMSDNQPRGTFRVLDFST 720
            C  C  G       P   + R+ +P   + +DL       SLGGA+YAL IVDD T + W   +  KS+   A + W       S R++  +R D GGE  S EF   + E G+ ++++    PQ N VAE     +  G  + ++ +GL     LW EA     Y+ NRS    N   +P+   +G   S      FG   +  ++     KL  RG   + VG  D + +G +R+ D +T
Sbjct:  613 CDTCQAGKITHHPFPTVASNRSAQPLDRVHMDLLAFDGAVSLGGAKYALVIVDDYTRYLWAIPMSHKSDTFAAFKSWLAKVERSSSRKLLAVRSDNGGEFLSNEFSSFLEEQGITRQLSIPDTPQQNGVAERANRSITEGVRSMLHQSGLSHA--LWAEALATYVYVKNRSPHSANSGVTPHTRWHGSKPSAGHLRVFGCRAWKAATTEARSKLDPRGIPLVFVGY-DLESKG-YRLFDPAT 850          
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Match: A0A2X0MD05_9BASI (BQ5605_C004g02817 protein n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MD05_9BASI)

HSP 1 Score: 103 bits (256), Expect = 2.470e-21
Identity = 72/242 (29.75%), Postives = 109/242 (45.04%), Query Frame = 1
Query:    1 CIGCAKGIRIKDHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALAIVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGERQSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGLGDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGTSGYYKSSPG--HKLASRGKQCIMVGMSDNQPRGTFRVLDFST 720
            C  C  G       P   + R+ +P   + +DL       SLGGA+YAL IVDD T + W   +  KS+   A + W       S R++  +R D GGE  S EF   + E G+ ++++    PQ N VAE     +  G  + ++ +GL     LW EA     Y+ NRS    N   +P+   +G   S      FG   +  ++     KL  RG   + VG  D + +G +R+ D +T
Sbjct:  396 CDTCQAGKITHHPFPTVASNRSAQPLDRVHMDLLAFDGAVSLGGAKYALVIVDDYTRYLWAIPMSHKSDTFAAFKSWLAKVERSSSRKLLAVRSDNGGEFLSNEFSSFLEEQGITRQLSIPDTPQQNGVAERANRSITEGVRSMLHQSGLSHA--LWAEALATYVYVKNRSPHSANSGVTPHTRWHGSKPSAGHLRVFGCRAWKAATTEARSKLDPRGIPLVFVGY-DLESKG-YRLFDPAT 633          
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Match: A0A2X0MJV6_9BASI (BQ5605_C032g11021 protein n=1 Tax=Microbotryum silenes-dioicae TaxID=796604 RepID=A0A2X0MJV6_9BASI)

HSP 1 Score: 103 bits (256), Expect = 2.480e-21
Identity = 72/242 (29.75%), Postives = 109/242 (45.04%), Query Frame = 1
Query:    1 CIGCAKGIRIKDHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALAIVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGERQSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGLGDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGTSGYYKSSPG--HKLASRGKQCIMVGMSDNQPRGTFRVLDFST 720
            C  C  G       P   + R+ +P   + +DL       SLGGA+YAL IVDD T + W   +  KS+   A + W       S R++  +R D GGE  S EF   + E G+ ++++    PQ N VAE     +  G  + ++ +GL     LW EA     Y+ NRS    N   +P+   +G   S      FG   +  ++     KL  RG   + VG  D + +G +R+ D +T
Sbjct:  514 CDTCQAGKITHHPFPTVASNRSAQPLDRVHMDLLAFDGAVSLGGAKYALVIVDDYTRYLWAIPMSHKSDTFAAFKSWLAKVERSSSRKLLAVRSDNGGEFLSNEFSSFLEEQGITRQLSIPDTPQQNGVAERANRSITEGVRSMLHQSGLSHA--LWAEALATYVYVKNRSPHSANSGVTPHTRWHGSKPSAGHLRVFGCRAWKAATTEARSKLDPRGIPLVFVGY-DLESKG-YRLFDPAT 751          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig8409.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0009010B651.950e-2233.03uncharacterized protein LOC109162697 n=1 Tax=Ipomo... [more]
Q7X7K3_ORYSJ2.830e-2229.39OSJNBb0046P18.1 protein n=1 Tax=Oryza sativa subsp... [more]
A0A2X0NUV7_9BASI2.260e-2129.75BQ5605_C129g13358 protein n=1 Tax=Microbotryum sil... [more]
A0A2X0LU03_9BASI2.340e-2129.75BQ5605_C010g06158 protein n=2 Tax=Microbotryum sil... [more]
A0A2X0PHF2_9BASI2.380e-2129.75BQ5605_C002g01153 protein n=5 Tax=Microbotryum sil... [more]
A0A2X0M6Q8_9BASI2.380e-2129.75BQ5605_C001g00248 protein n=3 Tax=Microbotryum sil... [more]
A0A2X0M6Y3_9BASI2.380e-2129.75BQ5605_C001g00217 protein n=8 Tax=Microbotryum sil... [more]
A0A2X0M314_9BASI2.460e-2129.75BQ5605_C002g01370 protein n=3 Tax=Microbotryum sil... [more]
A0A2X0MD05_9BASI2.470e-2129.75BQ5605_C004g02817 protein n=1 Tax=Microbotryum sil... [more]
A0A2X0MJV6_9BASI2.480e-2129.75BQ5605_C032g11021 protein n=1 Tax=Microbotryum sil... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig8409contigC-tenellus_contig8409:594..1340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4565.Traes_3B_D5F0C4EDC.1
PFAMsgag_pre-integrs,rve
Model size747
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.13e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M2QC@4447|Liliopsida,3IMWS@38820|Poales
DescriptionGAG-pre-integrase domain
Cds size747
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790103.6831646-CDS-C-tenellus_contig8409:593..13401680790103.6831646-CDS-C-tenellus_contig8409:593..1340Choristocarpus tenellus KU2346CDSC-tenellus_contig8409 594..1340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig8409.1.1prot_C-tenellus_contig8409.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig8409 594..1340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig8409.1.1

>prot_C-tenellus_contig8409.1.1 ID=prot_C-tenellus_contig8409.1.1|Name=mRNA_C-tenellus_contig8409.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=249bp
CIGCAKGIRIKDHVPKSTNVRTKRPFTCIFIDLTGPKTVKSLGGAEYALA
IVDDVTCFTWIRLLQKKSNAAKALRRWFKAEVLPSGRRIHYIRHDPGGER
QSEEFQDLVTEMGVVKEMTRTGEPQYNSVAEHRIAQVDSGAMASIYSAGL
GDKMWLWGEAYNHSAYILNRSSTVPNKRTSPYCALYGEVGSLTGAPAFGT
SGYYKSSPGHKLASRGKQCIMVGMSDNQPRGTFRVLDFSTVCFREPTYI
back to top

mRNA from alignment at C-tenellus_contig8409:594..1340-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig8409.1.1 ID=mRNA_C-tenellus_contig8409.1.1|Name=mRNA_C-tenellus_contig8409.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=747bp|location=Sequence derived from alignment at C-tenellus_contig8409:594..1340- (Choristocarpus tenellus KU2346)
TGCATAGGATGCGCAAAAGGGATTAGGATAAAAGATCATGTTCCCAAGTC CACCAATGTACGAACAAAGCGACCCTTCACTTGCATTTTTATTGACCTTA CTGGACCCAAGACAGTCAAATCCCTCGGTGGGGCTGAATATGCCCTGGCA ATAGTTGATGATGTGACTTGCTTCACATGGATACGACTACTCCAGAAGAA GAGTAATGCTGCCAAGGCCCTTAGACGATGGTTTAAGGCTGAGGTACTTC CCAGTGGGAGGCGAATTCACTACATTCGACACGACCCAGGGGGTGAGCGG CAGAGTGAGGAATTCCAGGATTTGGTAACAGAAATGGGTGTGGTGAAGGA AATGACTAGGACAGGGGAACCTCAGTATAATAGTGTTGCTGAACATCGCA TCGCTCAAGTAGATAGTGGTGCCATGGCCAGCATTTATTCTGCGGGATTG GGGGATAAAATGTGGTTGTGGGGAGAAGCATACAATCACTCAGCTTACAT CCTCAACAGAAGTTCAACTGTTCCAAATAAGAGGACCTCCCCTTATTGTG CACTGTATGGGGAAGTTGGATCACTAACTGGTGCCCCAGCTTTTGGCACC TCTGGATACTACAAGTCTAGTCCCGGACACAAGCTTGCGAGTCGTGGGAA GCAGTGCATCATGGTTGGTATGTCTGACAATCAACCCCGTGGCACTTTCC GTGTACTAGACTTCAGTACTGTGTGCTTCAGAGAGCCAACATACATT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig8409:594..1340-

>mRNA_C-tenellus_contig8409.1.1 ID=mRNA_C-tenellus_contig8409.1.1|Name=mRNA_C-tenellus_contig8409.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=747bp|location=Sequence derived from alignment at C-tenellus_contig8409:594..1340- (Choristocarpus tenellus KU2346)
TGCATAGGATGCGCAAAAGGGATTAGGATAAAAGATCATGTTCCCAAGTC
CACCAATGTACGAACAAAGCGACCCTTCACTTGCATTTTTATTGACCTTA
CTGGACCCAAGACAGTCAAATCCCTCGGTGGGGCTGAATATGCCCTGGCA
ATAGTTGATGATGTGACTTGCTTCACATGGATACGACTACTCCAGAAGAA
GAGTAATGCTGCCAAGGCCCTTAGACGATGGTTTAAGGCTGAGGTACTTC
CCAGTGGGAGGCGAATTCACTACATTCGACACGACCCAGGGGGTGAGCGG
CAGAGTGAGGAATTCCAGGATTTGGTAACAGAAATGGGTGTGGTGAAGGA
AATGACTAGGACAGGGGAACCTCAGTATAATAGTGTTGCTGAACATCGCA
TCGCTCAAGTAGATAGTGGTGCCATGGCCAGCATTTATTCTGCGGGATTG
GGGGATAAAATGTGGTTGTGGGGAGAAGCATACAATCACTCAGCTTACAT
CCTCAACAGAAGTTCAACTGTTCCAAATAAGAGGACCTCCCCTTATTGTG
CACTGTATGGGGAAGTTGGATCACTAACTGGTGCCCCAGCTTTTGGCACC
TCTGGATACTACAAGTCTAGTCCCGGACACAAGCTTGCGAGTCGTGGGAA
GCAGTGCATCATGGTTGGTATGTCTGACAATCAACCCCGTGGCACTTTCC
GTGTACTAGACTTCAGTACTGTGTGCTTCAGAGAGCCAACATACATT
back to top